Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 5.1e-287 990.3 488 100.0
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 5.1e-287 990.3 488 100.0
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 6.3e-285 983.4 488 99.2
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 4.2e-281 970.7 487 97.1
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 1.0e-279 966.1 487 96.9
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 1.3e-277 959.1 487 96.9
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 4.2e-273 944.1 480 94.8
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 7.0e-268 926.8 488 92.6
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 1.7e-266 922.2 486 91.8
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 2.9e-266 921.4 488 91.6
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 3.8e-266 921.0 487 92.0
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.5e-265 919.1 486 91.2
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 3.2e-265 917.9 485 91.8
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 3.2e-265 917.9 488 91.4
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 3.2e-265 917.9 483 91.7
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 4.2e-265 917.5 486 92.2
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 4.2e-265 917.5 483 91.1
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 7.2e-265 916.8 488 91.6
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 7.2e-265 916.8 486 90.7
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 7.2e-265 916.8 486 90.7
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.6e-264 915.6 486 89.3
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.6e-264 915.6 486 90.7
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 1.6e-264 915.6 486 90.3
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.1e-264 915.2 486 90.5
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 2.1e-264 915.2 485 90.9
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 3.6e-264 914.4 486 91.2
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 3.6e-264 914.4 488 91.0
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 4.7e-264 914.1 486 92.0
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 6.1e-264 913.7 486 90.1
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 6.1e-264 913.7 486 91.8
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 6.1e-264 913.7 486 91.2
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 8.0e-264 913.3 483 91.1
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.4e-263 912.5 486 89.9
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 1.4e-263 912.5 484 91.5
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 2.3e-263 911.8 486 91.2
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 5.2e-263 910.6 486 91.4
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 5.2e-263 910.6 485 90.9
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 6.7e-263 910.2 484 90.7
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 6.7e-263 910.2 486 90.3
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 8.8e-263 909.8 483 90.7
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 8.8e-263 909.8 486 92.2
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 1.1e-262 909.4 482 90.9
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.5e-262 909.1 486 89.5
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 1.5e-262 909.1 480 92.1
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 1.5e-262 909.1 486 91.4
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 2.0e-262 908.7 487 91.2
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 2.0e-262 908.7 486 90.3
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 2.0e-262 908.7 488 90.6
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 2.0e-262 908.7 486 90.5
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.0e-262 908.7 488 90.0
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 2.6e-262 908.3 486 91.2
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 2.6e-262 908.3 485 90.1
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 4.4e-262 907.5 486 89.7
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 4.4e-262 907.5 486 90.5
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 5.7e-262 907.1 486 90.5
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 5.7e-262 907.1 486 91.2
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 7.4e-262 906.7 486 90.9
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 1.3e-261 906.0 482 90.9
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 1.3e-261 906.0 483 90.5
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 1.3e-261 906.0 481 90.4
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 1.7e-261 905.6 486 91.2
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 1.7e-261 905.6 486 90.7
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 2.2e-261 905.2 485 90.9
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 2.8e-261 904.8 487 89.3
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 2.8e-261 904.8 481 90.6
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 2.8e-261 904.8 488 90.6
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 3.7e-261 904.4 486 90.9
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 3.7e-261 904.4 486 89.7
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 3.7e-261 904.4 481 90.9
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 3.7e-261 904.4 486 90.1
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 6.3e-261 903.7 488 90.4
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 8.2e-261 903.3 485 90.7
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 1.4e-260 902.5 486 90.5
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 1.8e-260 902.1 486 90.9
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 1.8e-260 902.1 486 89.7
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 3.1e-260 901.4 486 89.7
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 4.1e-260 901.0 486 90.3
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 4.1e-260 901.0 481 90.4
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 4.1e-260 901.0 488 89.3
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 4.1e-260 901.0 485 89.7
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 5.3e-260 900.6 491 89.6
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 5.3e-260 900.6 486 90.3
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 1.2e-259 899.4 483 90.9
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 1.2e-259 899.4 481 90.4
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 2.0e-259 898.7 488 90.4
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.6e-259 898.3 488 88.9
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 3.5e-259 897.9 486 90.3
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 5.9e-259 897.1 485 89.9
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 5.9e-259 897.1 488 89.8
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 5.9e-259 897.1 486 88.3
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 1.7e-258 895.6 490 90.2
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 2.2e-258 895.2 481 89.8
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 8.5e-258 893.3 473 90.9
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 1.5e-257 892.5 484 90.5
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.9e-257 892.1 484 88.8
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 1.9e-257 892.1 486 88.9
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 3.2e-257 891.3 484 89.0
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 5.5e-257 890.6 474 91.6
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 9.4e-257 889.8 479 89.1
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 2.7e-256 888.3 489 88.3
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 1.0e-255 886.3 489 88.3
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 1.8e-255 885.6 486 89.1
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 1.1e-252 876.3 452 92.5
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 2.4e-252 875.2 459 92.8
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 3.1e-252 874.8 460 92.0
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 3.1e-252 874.8 459 92.8
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 7.0e-252 873.6 460 91.7
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 5.9e-251 870.5 483 88.4
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 4.4e-246 854.4 457 89.5
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 7.5e-246 853.6 489 85.7
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 9.1e-244 846.7 491 84.7
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 5.9e-243 844.0 438 90.0
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 7.7e-243 843.6 438 90.9
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 1.0e-239 833.2 480 81.7
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 4.9e-237 824.3 456 84.9
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 1.4e-236 822.8 430 88.6
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 3.5e-235 818.1 409 94.1
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 1.0e-234 816.6 407 94.3
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 1.0e-234 816.6 406 94.6
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 2.3e-234 815.5 407 93.9
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 3.9e-234 814.7 405 94.6
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 2.9e-229 798.5 435 86.2
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 6.0e-227 790.8 487 80.3
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 7.1e-220 767.3 386 94.0
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 9.2e-220 766.9 427 82.9
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 4.3e-217 758.1 435 81.1
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 5.6e-217 757.7 424 81.8
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 3.9e-210 734.9 392 89.3
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.6e-206 722.2 393 88.5
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 2.6e-206 722.2 480 76.7
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 8.1e-192 674.1 369 88.9
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 6.7e-186 654.4 346 89.3
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 1.3e-184 650.2 395 75.2
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.5e-182 643.3 486 70.0
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 2.6e-174 615.9 317 92.4
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.8e-173 612.1 486 67.7
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.4e-172 610.1 486 67.5
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.8e-170 603.2 486 67.1
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 5.9e-166 588.2 331 87.0
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.4e-143 513.1 279 86.4
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.8e-138 496.9 351 70.9
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 7.7e-126 454.9 276 76.1
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.2e-112 410.2 203 94.1
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 4.7e-99 365.9 487 47.4
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.8e-98 364.0 177 94.9
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 9.2e-95 351.7 222 77.0
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.1e-92 344.7 174 95.4
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 2.2e-88 330.5 168 92.9
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 4.0e-74 283.1 146 90.4
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 2.5e-68 263.8 164 83.5
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 2.8e-67 260.4 129 97.7
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 1.1e-66 258.5 146 84.2
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 4.2e-63 246.5 127 89.8
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 2.3e-61 240.7 147 82.3
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 6.1e-54 216.1 259 44.4
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 5.1e-53 213.0 127 84.3
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 2.8e-51 207.2 100 95.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.5e-47 194.1 102 88.2
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 5.5e-39 166.4 108 75.9
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 5.7e-36 156.4 102 77.5
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 8.2e-35 152.5 76 97.4
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 8.2e-35 152.5 76 97.4
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 8.8e-29 132.5 68 97.1
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 4.4e-28 130.2 197 37.1
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.3e-27 128.6 70 88.6
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.1e-26 125.6 65 90.8
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.1e-26 125.6 65 90.8
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.1e-26 124.0 68 86.8
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.2e-24 117.9 65 86.2
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.0e-24 116.7 65 84.6
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 8.0e-22 109.4 65 80.0
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 1.4e-21 108.6 67 70.1
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 1.7e-19 101.7 67 68.7
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 7.7e-17 92.8 48 87.5
Nitab4.5_0027010g0010 Nicotiana tabacum HOM05D003867 ORTHO05D004593 2.9e-16 90.9 61 90.2
Nitab4.5_0002184g0100 Nicotiana tabacum HOM05D003867 ORTHO05D004593 4.2e-15 87.0 61 75.4
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 7.2e-15 86.3 168 36.9
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 2.0e-12 78.2 69 59.4
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 5.7e-12 76.6 72 56.9
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 1.3e-11 75.5 72 56.9
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 1.2e-09 68.9 61 59.0


User provided reference genes

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