Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g086890.3 Solanum lycopersicum HOM05D006484 ORTHO05D008002 1.1e-156 556.6 286 100.0
Sopen02g031660 Solanum pennellii HOM05D006484 ORTHO05D008002 1.6e-155 552.7 286 99.3
Nitab4.5_0005176g0030 Nicotiana tabacum HOM05D006484 ORTHO05D008002 5.5e-132 474.6 294 85.4
Nitab4.5_0003337g0080 Nicotiana tabacum HOM05D006484 ORTHO05D008002 2.3e-130 469.2 295 85.1
Peaxi162Scf00129g00106 Petunia axillaris HOM05D006484 ORTHO05D008002 4.9e-128 461.5 291 84.2
PGSC0003DMG401000526 Solanum tuberosum HOM05D006484 ORTHO05D008002 8.9e-122 440.7 233 96.6
PGSC0003DMG402000526 Solanum tuberosum HOM05D006484 ORTHO05D008002 8.9e-122 440.7 233 96.6
Dinv33496 Davidia involucrata HOM05D006484 ORTHO05D008002 3.9e-101 372.1 288 69.4
SalBow7G4444 Salvia bowleyana HOM05D006484 ORTHO05D008002 2.5e-100 369.4 286 68.5
MSTRG.15510 Avicennia marina HOM05D006484 ORTHO05D008002 5.6e-100 368.2 285 68.4
SGA_v2.0_scaffold30G12470 Striga asiatica HOM05D006484 ORTHO05D008002 8.9e-98 360.9 256 71.5
Gohir.D11G071200 Gossypium hirsutum HOM05D006484 ORTHO05D008002 1.2e-97 360.5 287 66.9
Gorai.007G076500 Gossypium raimondii HOM05D006484 ORTHO05D008002 1.2e-97 360.5 287 66.9
CSS0043741 Camellia sinensis var. sinensis HOM05D006484 ORTHO05D008002 1.5e-97 360.1 296 66.9
Duzib147G0204 Durio zibethinus HOM05D006484 ORTHO05D008002 2.0e-97 359.8 268 67.9
COL.COLO4_28946 Corchorus olitorius HOM05D006484 ORTHO05D008002 3.4e-97 359.0 288 66.7
Migut.K01368 Erythranthe guttata HOM05D006484 ORTHO05D008002 3.4e-97 359.0 286 65.0
Gohir.A11G067300 Gossypium hirsutum HOM05D006484 ORTHO05D008002 5.8e-97 358.2 287 66.6
Hma1.2p1_0802F.1_g220370 Hydrangea macrophylla HOM05D006484 ORTHO05D008002 1.3e-96 357.1 262 70.6
Thecc.04G008700 Theobroma cacao HOM05D006484 ORTHO05D008002 4.9e-96 355.1 292 65.1
Manes.17G122200 Manihot esculenta HOM05D006484 ORTHO05D008002 6.4e-96 354.8 290 66.2
PGR142G1659 Punica granatum HOM05D006484 ORTHO05D008002 1.4e-95 353.6 268 66.0
Lsat_1_v5_gn_0_26201 Lactuca sativa HOM05D006484 ORTHO05D008002 7.1e-95 351.3 288 63.5
Hund05806 Selenicereus undatus HOM05D006484 ORTHO05D008002 9.2e-95 350.9 252 71.0
Rhsim08G0055200 Rhododendron simsii HOM05D006484 ORTHO05D008002 3.5e-94 349.0 295 64.7
HanXRQChr15g0474541 Helianthus annuus HOM05D006484 ORTHO05D008002 4.6e-94 348.6 283 63.6
Cc07_g02300 Coffea canephora HOM05D006484 ORTHO05D008002 6.0e-94 348.2 231 76.2
Ciclev10016148m.g Citrus clementina HOM05D006484 ORTHO05D008002 1.7e-93 346.7 287 64.1
Haze_14667 Corylus avellana HOM05D006484 ORTHO05D008002 1.7e-93 346.7 294 63.9
Cfa007430 Carpinus fangiana HOM05D006484 ORTHO05D008002 5.1e-93 345.1 270 66.7
unitig_88.g27777 Utricularia gibba HOM05D000190 ORTHO05D000113 5.1e-93 345.1 248 69.8
TAR629G1796 Trochodendron aralioides HOM05D006484 ORTHO05D008002 1.5e-92 343.6 273 64.5
TWI56G0797 Tripterygium wilfordii HOM05D006484 ORTHO05D008002 1.9e-92 343.2 287 64.1
CiPaw.03G037700 Carya illinoinensis HOM05D006484 ORTHO05D008002 4.3e-92 342.0 294 61.9
MD17G1035000 Malus domestica HOM05D006484 ORTHO05D008002 4.3e-92 342.0 263 65.4
GSVIVG01032484001 Vitis vinifera HOM05D006484 ORTHO05D008002 4.3e-92 342.0 227 75.3
EL10Ac6g14629 Beta vulgaris HOM05D006484 ORTHO05D008002 9.6e-92 340.9 244 71.3
Potri.017G073000 Populus trichocarpa HOM05D006484 ORTHO05D008002 1.6e-91 340.1 292 62.0
Aqoxy3G01007 Aquilegia oxysepala HOM05D006484 ORTHO05D008002 2.1e-91 339.7 264 65.5
Lj7A591T78 Lonicera japonica HOM05D006484 ORTHO05D008002 4.7e-91 338.6 243 70.4
THA.LOC104805398 Tarenaya hassleriana HOM05D006484 ORTHO05D008002 2.4e-90 336.3 287 64.1
ECA246G1918 Erigeron canadensis HOM05D006484 ORTHO05D008002 3.1e-90 335.9 234 70.5
QL02p076682 Quercus lobata HOM05D006484 ORTHO05D008002 1.5e-89 333.6 288 61.5
arahy.Tifrunner.gnm1.ann1.J6NIZK Arachis hypogaea HOM05D006484 ORTHO05D008002 2.6e-89 332.8 294 61.9
arahy.Tifrunner.gnm1.ann1.ND36BV Arachis hypogaea HOM05D006484 ORTHO05D008002 2.6e-89 332.8 294 61.9
Sabra16G0230700 Salix brachista HOM05D006484 ORTHO05D008002 2.6e-89 332.8 289 60.9
Prupe.3G283800 Prunus persica HOM05D006484 ORTHO05D008002 4.4e-89 332.0 268 64.2
CANSAT64G2071 Cannabis sativa HOM05D006484 ORTHO05D008002 9.9e-89 330.9 288 63.5
FAN02G1518 Fragaria x ananassa HOM05D006484 ORTHO05D008002 1.3e-88 330.5 277 61.7
RcHm_v2.0_Chr2g0171411 Rosa chinensis HOM05D006484 ORTHO05D008002 1.3e-88 330.5 280 62.5
Lalb_Chr21g0319431 Lupinus albus HOM05D006484 ORTHO05D008002 1.7e-88 330.1 234 70.1
MBI16_g26453_MAGBIO Magnolia biondii HOM05D006484 ORTHO05D008002 2.2e-88 329.7 287 62.4
BcaC02g09737 Brassica carinata HOM05D006484 ORTHO05D008002 3.8e-88 328.9 289 61.2
C04p37040 Brassica napus HOM05D006484 ORTHO05D008002 3.8e-88 328.9 289 61.2
BolC4t25282H Brassica oleracea HOM05D006484 ORTHO05D008002 3.8e-88 328.9 289 61.2
FAN14G3872 Fragaria x ananassa HOM05D006484 ORTHO05D008002 8.4e-88 327.8 277 61.4
AT3G55250 Arabidopsis thaliana HOM05D006484 ORTHO05D008002 1.1e-87 327.4 268 61.9
A09p48180 Brassica napus HOM05D006484 ORTHO05D008002 1.4e-87 327.0 294 60.2
AL5G36370 Arabidopsis lyrata HOM05D006484 ORTHO05D008002 2.4e-87 326.2 268 62.3
BraA09t40274Z Brassica rapa HOM05D006484 ORTHO05D008002 3.2e-87 325.9 294 60.2
MELO3C009955.2 Cucumis melo HOM05D006484 ORTHO05D008002 3.2e-87 325.9 279 64.2
CsaV3_3G042410 Cucumis sativus L. HOM05D006484 ORTHO05D008002 3.2e-87 325.9 279 63.8
FvH4_6g50620 Fragaria vesca HOM05D006484 ORTHO05D008002 3.2e-87 325.9 277 61.0
Sp5g07210 Schrenkiella parvula HOM05D006484 ORTHO05D008002 3.2e-87 325.9 294 59.2
Ah.02g127510 Amaranthus hybridus HOM05D006484 ORTHO05D008002 4.2e-87 325.5 218 74.8
Eucgr.I01814 Eucalyptus grandis HOM05D006484 ORTHO05D008002 4.2e-87 325.5 289 60.9
A04p04700 Brassica napus HOM05D006484 ORTHO05D008002 7.1e-87 324.7 274 62.4
C08p30440 Brassica napus HOM05D006484 ORTHO05D008002 7.1e-87 324.7 293 60.1
BraA04t16182Z Brassica rapa HOM05D006484 ORTHO05D008002 7.1e-87 324.7 274 62.4
BcaB02g08436 Brassica carinata HOM05D006484 ORTHO05D008002 9.3e-87 324.3 242 67.4
BolC8t50667H Brassica oleracea HOM05D006484 ORTHO05D008002 1.6e-86 323.6 293 59.7
Carub.0005s2191 Capsella rubella HOM05D006484 ORTHO05D008002 2.1e-86 323.2 242 66.1
CARHR165250 Cardamine hirsuta HOM05D006484 ORTHO05D008002 4.6e-86 322.0 268 61.2
PSO063G6163 Papaver somniferum HOM05D006484 ORTHO05D008002 6.0e-86 321.6 293 61.8
BcaC07g39842 Brassica carinata HOM05D006484 ORTHO05D008002 7.8e-86 321.2 293 59.0
ClCG10G014230 Citrullus lanatus HOM05D006484 ORTHO05D008002 7.8e-86 321.2 286 62.9
Sed0007993 Sechium edule HOM05D006484 ORTHO05D008002 7.8e-86 321.2 285 61.8
PSO832G1464 Papaver somniferum HOM05D006484 ORTHO05D008002 1.3e-85 320.5 293 61.8
Sc10g0003790 Simmondsia chinensis HOM05D006484 ORTHO05D008002 1.9e-84 316.6 281 60.5
FAN09G0334 Fragaria x ananassa HOM05D006484 ORTHO05D008002 2.5e-84 316.2 285 58.9
DCAR_021681 Daucus carota HOM05D006484 ORTHO05D008002 1.6e-83 313.5 321 54.5
Aa31LG10G9850 Aethionema arabicum HOM05D006484 ORTHO05D008002 2.1e-83 313.2 256 62.9
Thhalv10010599m.g Eutrema salsugineum HOM05D006484 ORTHO05D008002 4.8e-83 312.0 297 57.6
FAN05G1767 Fragaria x ananassa HOM05D006484 ORTHO05D008002 4.8e-83 312.0 298 56.0
Glyma.13G169000 Glycine max HOM05D006484 ORTHO05D008002 1.4e-82 310.5 278 58.3
Glyma.19G009200 Glycine max HOM05D006484 ORTHO05D008002 1.4e-82 310.5 273 59.7
Phvul.004G016700 Phaseolus vulgaris HOM05D006484 ORTHO05D008002 1.8e-82 310.1 233 66.1
VMungo0464G2075 Vigna mungo HOM05D006484 ORTHO05D008002 3.1e-82 309.3 283 59.0
Ca_04198_v3 Cicer arietinum L. HOM05D006484 ORTHO05D008002 9.0e-82 307.8 249 62.7
Os05g0526200 Oryza sativa ssp. japonica HOM05D006484 ORTHO05D008002 2.0e-81 306.6 250 64.0
Lj2g0018435 Lotus japonicus HOM05D006484 ORTHO05D008002 5.8e-81 305.1 287 57.5
CDE05G1394 Ceratophyllum demersum HOM05D001719 ORTHO05D008883 1.7e-80 303.5 218 66.5
TPR.G2295 Trifolium pratense HOM05D006484 ORTHO05D008002 6.4e-80 301.6 292 55.8
Psat1g058640 Pisum sativum HOM05D006484 ORTHO05D008002 1.4e-79 300.4 226 65.0
ATR0730G086 Amborella trichopoda HOM05D006484 ORTHO05D008002 7.9e-78 294.7 227 64.3
Medtr6g007180 Medicago truncatula HOM05D006484 ORTHO05D008002 4.3e-76 288.9 283 55.5
BcaB01g00117 Brassica carinata HOM05D006484 ORTHO05D008002 6.2e-75 285.0 293 55.6
Nn4g22800 Nelumbo nucifera HOM05D006484 ORTHO05D008002 4.0e-74 282.3 271 57.2
Actinidia35740 Actinidia chinensis HOM05D006484 ORTHO05D008002 1.3e-67 260.8 237 59.5
HPP92_024318 Vanilla planifolia HOM05D006484 ORTHO05D008002 6.5e-64 248.4 289 49.8
vmacro18241 Vaccinium macrocarpon HOM05D006484 ORTHO05D008002 1.8e-61 240.4 292 50.3
AUR62007841 Chenopodium quinoa HOM05D006484 ORTHO05D008002 1.9e-60 236.9 266 51.1
Cpa.g.sc39.92 Carica papaya HOM05D006484 ORTHO05D008002 9.0e-58 228.0 165 69.7
AagrBONN_evm.TU.Sc2ySwM_344.2636 Anthoceros agrestis HOM05D006484 ORTHO05D008002 2.0e-49 200.3 194 50.5
CAN.G473.120 Capsicum annuum HOM05D006484 ORTHO05D008002 5.0e-48 195.7 133 77.4
Mapoly0095s0016 Marchantia polymorpha HOM05D006484 ORTHO05D008002 5.5e-47 192.2 196 48.0
BolC3t16636H Brassica oleracea HOM05D006484 ORTHO05D008002 2.7e-46 189.9 146 64.4
AUR62003035 Chenopodium quinoa HOM05D006484 ORTHO05D008002 4.6e-46 189.1 203 51.2
Zm00001eb215070 Zea mays HOM05D006484 ORTHO05D008002 4.6e-46 189.1 140 62.9
Pp3c21_1380 Physcomitrium patens HOM05D006484 ORTHO05D008002 1.0e-45 188.0 193 46.1
BolC7t43763H Brassica oleracea HOM05D006484 ORTHO05D008002 2.2e-43 180.3 162 56.2
SMO165G0092 Selaginella moellendorffii HOM05D006484 ORTHO05D008002 1.1e-39 167.9 198 42.9
HPP92_024280 Vanilla planifolia HOM05D006484 ORTHO05D008002 1.4e-37 161.0 133 58.6
CAN.G685.18 Capsicum annuum HOM05D006484 ORTHO05D008002 1.1e-34 151.4 91 82.4
Atru.chr6.2293 Acer truncatum HOM05D006484 ORTHO05D008002 1.4e-34 151.0 86 79.1
CBR_g163 Chara braunii HOM05D006484 ORTHO05D008002 5.3e-34 149.1 200 41.5
MD09G1034600 Malus domestica HOM05D006484 ORTHO05D000001 6.5e-24 115.5 91 61.5
Atru.chr6.2294 Acer truncatum HOM05D006484 ORTHO05D008002 7.5e-20 102.1 88 60.2
BcaC06g34142 Brassica carinata HOM05D006484 ORTHO05D008002 1.1e-18 98.2 104 49.0
arahy.Tifrunner.gnm1.ann1.QWBN9A Arachis hypogaea HOM05D006484 ORTHO05D008002 3.1e-18 96.7 60 75.0
Cre03.g183400 Chlamydomonas reinhardtii HOM05D006484 ORTHO05D008002 8.5e-16 88.6 217 29.5
TPR.G33278 Trifolium pratense HOM05D006484 ORTHO05D008002 9.8e-12 75.1 51 64.7
MD09G1034700 Malus domestica HOM05D006484 ORTHO05D008002 1.2e-09 68.2 71 54.9
arahy.Tifrunner.gnm1.ann1.5V94PQ Arachis hypogaea HOM05D005791 ORTHO05D008002 6.6e-08 62.4 34 85.3
MCO09G217 Micromonas commoda HOM05D006484 ORTHO05D008002 1.6e-06 57.8 174 26.4


User provided reference genes

Program Settings