Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 2.3e-109 399.1 223 100.0
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 3.7e-107 391.7 224 98.7
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 1.0e-101 373.6 226 91.6
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 2.2e-51 206.5 228 63.2
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 6.4e-35 151.8 215 43.3
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 8.4e-35 151.4 191 49.2
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 2.7e-33 146.4 220 43.2
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 6.0e-33 145.2 230 40.9
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 5.6e-31 138.7 217 41.5
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 9.6e-31 137.9 181 44.8
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 1.8e-29 133.7 173 43.4
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 2.4e-29 133.3 174 45.4
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 6.9e-29 131.7 180 42.2
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 1.5e-28 130.6 180 43.9
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 3.4e-28 129.4 188 42.0
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 3.4e-28 129.4 190 42.1
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 3.8e-27 125.9 182 40.1
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 8.4e-27 124.8 181 40.9
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 1.1e-26 124.4 207 43.5
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 1.9e-26 123.6 201 38.3
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 3.2e-26 122.9 185 42.7
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 3.2e-26 122.9 172 44.2
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 4.2e-26 122.5 182 52.2
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 7.1e-26 121.7 172 43.6
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 7.1e-26 121.7 199 40.7
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 9.3e-26 121.3 172 43.6
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 1.2e-25 120.9 212 37.3
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 2.1e-25 120.2 171 41.5
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 2.1e-25 120.2 214 40.2
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 2.7e-25 119.8 179 41.9
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 3.5e-25 119.4 175 39.4
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 3.5e-25 119.4 173 39.3
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 4.6e-25 119.0 177 41.2
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 7.9e-25 118.2 193 38.3
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 1.0e-24 117.9 221 38.5
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 3.0e-24 116.3 191 38.2
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 1.5e-23 114.0 171 41.5
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 1.9e-23 113.6 200 44.5
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 1.9e-23 113.6 201 35.8
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 2.5e-23 113.2 182 37.9
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 3.3e-23 112.8 180 38.9
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 4.3e-23 112.5 203 37.9
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 7.4e-23 111.7 227 38.8
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 7.4e-23 111.7 169 37.9
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 9.6e-23 111.3 181 42.0
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 1.3e-22 110.9 172 37.8
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 1.6e-22 110.5 197 35.5
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 2.1e-22 110.2 195 36.9
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 2.8e-22 109.8 194 35.6
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 2.8e-22 109.8 165 38.2
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 3.6e-22 109.4 198 34.3
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 4.8e-22 109.0 186 37.1
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 4.8e-22 109.0 168 39.9
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 6.2e-22 108.6 193 36.8
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 8.1e-22 108.2 174 38.5
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 8.1e-22 108.2 183 37.7
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 1.8e-21 107.1 186 36.6
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.8e-21 107.1 181 37.0
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 1.8e-21 107.1 181 37.0
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 2.4e-21 106.7 218 38.1
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 3.1e-21 106.3 180 39.4
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 3.1e-21 106.3 185 47.6
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 3.1e-21 106.3 187 35.8
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 3.1e-21 106.3 178 47.8
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 5.3e-21 105.5 193 35.2
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 1.2e-20 104.4 162 42.6
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 1.2e-20 104.4 215 37.2
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 1.2e-20 104.4 181 33.7
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 1.5e-20 104.0 172 38.4
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.5e-20 104.0 196 42.3
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 1.5e-20 104.0 176 36.9
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 2.0e-20 103.6 187 38.5
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 3.4e-20 102.8 162 51.9
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 3.4e-20 102.8 170 37.1
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 3.4e-20 102.8 195 35.4
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 3.4e-20 102.8 185 34.1
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 5.8e-20 102.1 170 40.0
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 7.6e-20 101.7 186 47.3
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 1.7e-19 100.5 174 34.5
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 2.2e-19 100.1 165 41.2
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 2.2e-19 100.1 194 31.4
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 2.2e-19 100.1 178 46.1
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 4.9e-19 99.0 179 43.6
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 6.4e-19 98.6 179 34.1
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 8.4e-19 98.2 186 36.0
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 1.1e-18 97.8 198 32.3
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 1.4e-18 97.4 187 35.8
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 1.4e-18 97.4 187 35.8
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 1.4e-18 97.4 165 37.6
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 1.4e-18 97.4 200 31.5
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 1.9e-18 97.1 181 35.9
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 7.1e-18 95.1 180 45.0
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 7.1e-18 95.1 198 31.8
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 7.1e-18 95.1 183 33.9
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 9.3e-18 94.7 161 37.9
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 9.3e-18 94.7 161 37.9
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 1.2e-17 94.4 192 35.9
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 1.6e-17 94.0 157 36.9
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 2.1e-17 93.6 182 34.6
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 2.1e-17 93.6 203 32.5
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 2.1e-17 93.6 71 63.4
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 2.7e-17 93.2 161 37.3
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 6.0e-17 92.0 173 33.5
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 6.0e-17 92.0 173 33.5
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 7.9e-17 91.7 64 62.5
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 3.9e-16 89.4 214 32.7
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 1.5e-15 87.4 166 33.1
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 1.9e-15 87.0 237 37.1
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 1.9e-15 87.0 179 33.5
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 1.3e-14 84.3 174 36.8
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 1.3e-14 84.3 199 40.7
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 1.6e-14 84.0 61 60.7
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 2.8e-14 83.2 174 32.2
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 3.7e-14 82.8 221 36.7
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 8.1e-14 81.6 173 32.4
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 1.1e-13 81.3 180 41.1
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 1.8e-13 80.5 158 31.6
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 5.3e-13 79.0 148 31.8
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 1.5e-12 77.4 206 29.1
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 5.8e-12 75.5 79 44.3
Duzib147G0144 Durio zibethinus HOM05D005169 ORTHO05D006436 5.8e-12 75.5 136 36.0
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 1.7e-11 73.9 174 32.2
unitig_899.g15487 Utricularia gibba HOM05D005169 ORTHO05D006436 3.2e-10 69.7 46 58.7
C02p07220 Brassica napus HOM05D005169 ORTHO05D006436 5.5e-10 68.9 88 39.8
BolC2t06654H Brassica oleracea HOM05D005169 ORTHO05D006436 5.5e-10 68.9 88 39.8
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 4.6e-09 65.9 54 50.0
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 4.6e-09 65.9 45 60.0
Zm00001eb296260 Zea mays HOM05D005169 ORTHO05D006436 1.1e-07 61.2 164 29.3
CDE04G0766 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 4.3e-07 59.3 50 60.0
CDE06G1771 Ceratophyllum demersum HOM05D000110 ORTHO05D000024 1.3e-06 57.8 50 54.0
MD09G1031300 Malus domestica HOM05D005169 ORTHO05D006436 2.8e-06 56.6 45 57.8
Os01g0638800 Oryza sativa ssp. japonica HOM05D005169 ORTHO05D006436 8.2e-06 55.1 46 52.2


User provided reference genes

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