Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 6.2e-117 424.1 207 100.0
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 1.4e-113 412.9 207 98.1
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 2.1e-109 399.1 207 95.2
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.8e-108 396.0 207 93.7
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.2e-104 383.3 207 90.3
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 7.4e-102 374.0 207 88.4
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 3.3e-78 295.4 185 74.1
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 9.7e-78 293.9 158 89.2
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 3.7e-77 292.0 185 75.7
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 1.4e-76 290.0 211 68.2
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 1.8e-76 289.7 156 89.1
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 1.5e-75 286.6 208 70.7
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 2.0e-75 286.2 205 67.8
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 4.5e-75 285.0 202 70.3
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 1.9e-73 279.6 212 66.0
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 1.2e-72 276.9 216 68.5
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 1.6e-72 276.6 212 66.5
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 3.6e-72 275.4 205 64.9
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 4.7e-72 275.0 213 67.6
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 6.1e-72 274.6 211 67.8
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.0e-71 273.9 196 69.4
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 1.8e-71 273.1 214 64.5
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 1.8e-71 273.1 211 65.4
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 5.2e-71 271.6 215 64.7
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 2.6e-70 269.2 203 66.5
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 2.6e-70 269.2 180 72.8
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 1.7e-69 266.5 207 64.3
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 2.8e-69 265.8 169 74.0
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 3.7e-69 265.4 205 65.4
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 3.7e-69 265.4 164 76.8
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 3.7e-69 265.4 230 63.0
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 8.2e-69 264.2 207 64.7
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 1.1e-68 263.8 205 65.9
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 1.8e-68 263.1 202 64.9
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 2.4e-68 262.7 207 63.3
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 2.4e-68 262.7 207 63.3
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 3.1e-68 262.3 207 63.3
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 4.1e-68 261.9 164 73.2
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 4.1e-68 261.9 207 65.2
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 4.1e-68 261.9 176 73.3
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 7.0e-68 261.2 206 62.6
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 7.0e-68 261.2 207 63.8
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 2.0e-67 259.6 195 66.2
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 4.5e-67 258.5 203 65.5
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 4.5e-67 258.5 204 63.2
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 4.5e-67 258.5 169 73.4
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 5.9e-67 258.1 145 81.4
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 7.7e-67 257.7 209 64.6
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 1.0e-66 257.3 145 84.1
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 1.0e-66 257.3 181 68.5
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 1.3e-66 256.9 145 82.1
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 1.3e-66 256.9 154 77.9
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 2.2e-66 256.1 144 79.2
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 2.9e-66 255.8 181 68.5
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 3.8e-66 255.4 176 69.9
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 5.0e-66 255.0 217 63.6
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 8.5e-66 254.2 210 61.4
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 8.5e-66 254.2 143 81.8
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 8.5e-66 254.2 145 80.0
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 1.1e-65 253.8 171 75.4
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 1.1e-65 253.8 155 78.7
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 1.9e-65 253.1 182 66.5
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 3.2e-65 252.3 185 64.9
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 3.2e-65 252.3 206 60.7
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 3.2e-65 252.3 173 69.4
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 5.5e-65 251.5 173 69.9
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 7.2e-65 251.1 177 67.8
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 1.2e-64 250.4 169 71.0
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 2.1e-64 249.6 181 67.4
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 2.1e-64 249.6 161 75.2
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 3.6e-64 248.8 180 66.1
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 1.0e-63 247.3 214 59.8
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 2.3e-63 246.1 153 72.5
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 3.0e-63 245.7 145 77.2
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 5.2e-63 245.0 156 73.1
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 6.7e-63 244.6 177 67.2
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 1.2e-62 243.8 145 75.9
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 2.0e-62 243.0 139 79.9
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 7.5e-62 241.1 145 75.9
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 7.5e-62 241.1 145 75.9
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 1.3e-61 240.4 145 75.2
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 1.7e-61 240.0 211 61.6
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 1.4e-60 236.9 153 70.6
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 3.1e-60 235.7 156 74.4
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 7.0e-60 234.6 180 66.1
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 1.0e-58 230.7 123 86.2
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 2.2e-58 229.6 153 69.9
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.1e-57 227.3 167 67.1
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 3.2e-57 225.7 208 58.7
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 3.2e-57 225.7 208 58.7
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 3.6e-56 222.2 183 63.4
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 4.7e-56 221.9 206 56.8
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 1.0e-55 220.7 188 60.6
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 5.2e-55 218.4 123 81.3
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 1.5e-54 216.9 169 65.7
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 1.7e-53 213.4 123 81.3
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 8.3e-53 211.1 175 61.7
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 5.4e-52 208.4 123 77.2
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 3.8e-50 202.2 143 67.8
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 8.6e-50 201.1 152 57.2
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 8.6e-50 201.1 139 61.9
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 3.3e-49 199.1 148 66.9
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 7.2e-49 198.0 200 53.0
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 4.0e-47 192.2 141 63.1
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 1.5e-46 190.3 149 60.4
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 4.4e-46 188.7 152 61.2
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 1.1e-44 184.1 145 62.1
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 1.1e-44 184.1 118 71.2
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 2.4e-44 183.0 196 49.5
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 5.9e-43 178.3 113 76.1
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 1.7e-42 176.8 133 61.7
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 1.7e-42 176.8 164 55.5
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 2.3e-42 176.4 99 79.8
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 5.0e-42 175.3 99 79.8
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 5.0e-42 175.3 122 68.0
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 5.0e-42 175.3 122 68.0
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 5.0e-42 175.3 107 72.0
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 1.9e-41 173.3 111 75.7
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 1.9e-41 173.3 100 80.0
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 3.0e-39 166.0 121 66.9
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 6.8e-39 164.9 110 65.5
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 9.8e-38 161.0 192 45.3
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 7.8e-35 151.4 99 61.6
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 6.4e-29 131.7 73 80.8
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 5.4e-28 128.6 181 39.2
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 3.5e-27 125.9 129 54.3
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 6.0e-27 125.2 79 74.7
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 1.0e-26 124.4 116 54.3
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 3.9e-26 122.5 79 73.4
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 2.5e-25 119.8 75 69.3
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 4.7e-24 115.5 68 79.4
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 2.3e-23 113.2 64 76.6
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 2.0e-22 110.2 85 65.9
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 3.4e-22 109.4 87 62.1
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 4.6e-19 99.0 66 62.1
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 1.3e-18 97.4 86 52.3
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 1.3e-18 97.4 83 59.0
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 6.6e-18 95.1 61 72.1
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 6.6e-18 95.1 72 62.5
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 1.9e-17 93.6 58 72.4
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 4.0e-15 85.9 80 50.0
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 1.3e-10 70.9 57 63.2
RcHm_v2.0_Chr7g0228091 Rosa chinensis HOM05D005182 ORTHO05D344069 1.2e-08 64.3 95 40.0
Dinv33459 Davidia involucrata HOM05D005182 ORTHO05D006631 4.7e-08 62.4 33 78.8


User provided reference genes

Program Settings