Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 3619.3 1862 100.0
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 3563.9 1858 98.5
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 2742.2 1888 76.8
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 2582.4 1905 73.3
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 2410.6 1379 89.1
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 2322.7 1860 64.6
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 0.0e+00 2315.4 1237 95.6
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 2293.5 1915 66.8
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 2080.8 1866 58.7
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 2041.2 1858 58.0
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 2034.6 1987 55.6
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 2025.4 1865 57.5
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 2003.0 1966 55.6
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 2001.5 1857 57.4
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1991.1 1856 56.2
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 1981.8 1857 56.5
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1974.1 1857 56.4
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1963.3 1855 55.6
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 1951.4 1855 55.3
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 1950.3 1859 55.5
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1941.4 1878 55.2
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 1932.9 1950 54.6
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 1925.2 1859 55.8
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 1920.6 1859 55.9
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 1902.5 1860 54.4
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 1890.9 1860 54.7
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 1887.5 1863 54.6
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 1887.5 1858 54.6
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1886.7 1854 54.9
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 1867.8 1863 53.6
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 1866.7 1697 58.2
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 1862.8 1865 54.4
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1860.1 1848 53.6
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1857.0 1865 53.4
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 1847.0 1862 53.7
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1832.8 1855 52.8
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1830.5 2004 51.8
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 1826.6 1858 53.4
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 1825.1 1860 53.2
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1819.7 1855 52.3
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1819.3 1870 53.4
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1818.9 2045 51.1
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 1810.4 1861 52.8
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1809.7 1967 51.6
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1808.1 1878 51.9
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1807.0 1856 52.5
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1802.3 1875 51.9
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 1801.9 1862 52.7
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 1801.2 1874 52.6
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1800.8 1859 53.3
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 1788.1 1859 52.4
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1786.9 1861 52.8
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 1776.1 1868 51.9
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1766.1 1508 61.3
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1759.2 1895 51.9
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1744.6 1925 50.9
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 1741.1 1859 51.0
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 1722.2 1866 50.6
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 1718.7 1708 53.3
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1712.2 1450 61.4
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 1712.2 1866 50.9
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 1706.0 1853 51.9
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 1664.0 1727 52.0
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 1663.3 1862 49.1
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1662.5 1860 49.5
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 1654.4 1862 49.3
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 1653.6 1856 49.0
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1653.3 1863 49.1
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1653.3 1863 49.1
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 1653.3 1863 49.1
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 1647.9 1858 49.1
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1644.8 1861 49.3
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 1644.4 1861 49.2
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 1624.8 1855 48.4
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1598.6 1650 52.8
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 1596.6 1504 56.4
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 1579.3 1863 47.9
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1533.1 1849 47.5
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1526.5 1862 46.8
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 1498.0 1696 49.3
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1497.6 1867 46.4
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 1461.0 1350 57.2
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 0.0e+00 1440.2 1862 44.3
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 0.0e+00 1379.0 1300 56.7
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1328.2 2064 40.6
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 0.0e+00 1257.7 1387 50.2
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1244.2 1185 57.0
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 0.0e+00 1220.3 1848 39.7
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 0.0e+00 1149.8 1870 39.0
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 1.9e-281 973.8 971 54.4
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 2.3e-263 913.7 833 56.8
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 8.0e-256 888.6 1036 47.4
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 2.9e-245 853.6 936 52.1
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 2.2e-229 800.8 944 48.2
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 5.2e-223 779.6 411 98.1
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 8.9e-223 778.9 1952 31.3
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 9.2e-220 768.8 644 60.7
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 2.8e-208 730.7 728 53.6
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 4.6e-203 713.4 645 57.8
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 1.9e-201 708.0 856 47.2
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 7.4e-193 679.5 824 47.0
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.9e-188 664.8 611 57.1
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 1.8e-178 631.7 1867 28.5
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.5e-172 611.3 639 52.3
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 7.0e-167 593.2 1148 35.8
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 2.0e-166 591.7 796 44.0
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.4e-162 578.9 589 53.8
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 5.5e-156 557.0 529 55.2
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.8e-154 552.0 532 55.3
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 5.0e-149 533.9 272 98.5
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 4.9e-128 464.2 435 56.6
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 5.8e-121 440.7 430 56.3
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.7e-118 431.8 436 52.3
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.0e-117 429.9 638 41.7
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.2e-107 396.4 352 58.0
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 1.1e-103 383.3 346 58.1
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.2e-103 381.7 372 54.6
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.6e-102 379.4 342 59.1
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 3.0e-101 375.2 457 47.3
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 2.5e-100 372.1 337 56.4
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 9.0e-98 363.6 432 47.9
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 3.3e-92 345.1 397 51.6
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 5.1e-85 321.2 549 39.5
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 3.9e-77 295.0 621 33.2
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 7.4e-76 290.8 439 36.7
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 4.3e-68 265.0 266 54.1
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 4.8e-67 261.5 330 41.5
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 6.3e-67 261.2 258 54.3
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 2.6e-65 255.8 208 66.3
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 2.5e-63 249.2 225 61.3
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 4.8e-59 235.0 194 66.0
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 9.1e-58 230.7 135 88.9
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 2.3e-53 216.1 831 25.4
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 2.4e-50 206.1 280 45.0
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.2e-46 193.7 263 43.7
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 8.0e-46 191.0 189 54.0
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 2.8e-43 182.6 141 66.0
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.2e-41 177.2 209 47.8
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 2.7e-41 176.0 226 46.9
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 3.5e-41 175.6 147 59.9
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.7e-40 173.3 199 51.3
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 2.1e-38 166.4 161 52.8
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 5.7e-36 158.3 891 23.1
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 9.8e-36 157.5 127 64.6
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 1.3e-35 157.1 137 61.3
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 3.1e-34 152.5 138 59.4
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.5e-31 143.7 224 42.9
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 9.5e-31 141.0 155 48.4
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.2e-30 140.6 181 44.2
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 3.6e-30 139.0 179 44.1
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.6e-30 139.0 134 56.7
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 2.3e-29 136.3 192 43.2
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.7e-27 130.2 145 46.9
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 2.2e-27 129.8 123 50.4
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 3.3e-23 115.9 84 67.9
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.5e-20 107.1 103 53.4
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 2.9e-19 102.8 174 36.8
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 5.9e-17 95.1 101 51.5
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 3.9e-16 92.4 93 48.4
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 8.6e-16 91.3 107 49.5
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.6e-14 87.0 62 58.1
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 2.1e-14 86.7 61 72.1
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 1.0e-13 84.3 132 40.9
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 1.1e-10 74.3 121 34.7
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 1.1e-10 74.3 52 59.6
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 2.0e-09 70.1 86 51.2
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 3.5e-09 69.3 129 41.1
Hma1.2p1_2269F.1_g318480 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 3.5e-09 69.3 52 63.5
Hma1.2p1_0078F.1_g040220 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 1.7e-08 67.0 55 60.0
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 1.7e-08 67.0 122 36.9
Hma1.2p1_1397F.1_g280710 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 3.9e-08 65.9 52 59.6
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 3.9e-08 65.9 42 73.8
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 3.9e-08 65.9 42 73.8
TPR.G14699 Trifolium pratense HOM05D000127 ORTHO05D000243 3.6e-06 59.3 109 36.7


User provided reference genes

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