Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g086330.4 Solanum lycopersicum HOM05D003588 ORTHO05D004252 0.0e+00 1943.7 1044 100.0
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 0.0e+00 1924.4 1055 97.7
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 0.0e+00 1726.8 1011 91.3
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 0.0e+00 1683.7 1045 85.4
Peaxi162Scf00877g00020 Petunia axillaris HOM05D003588 ORTHO05D004252 0.0e+00 1560.8 1009 84.5
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 0.0e+00 1484.9 1040 77.9
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1400.6 1047 74.6
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1394.8 1058 73.5
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 0.0e+00 1325.5 1036 71.1
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 0.0e+00 1316.2 1057 67.2
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 0.0e+00 1306.2 1052 69.3
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 0.0e+00 1303.5 1015 70.0
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 0.0e+00 1302.7 1052 66.2
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 0.0e+00 1302.3 1124 67.2
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 0.0e+00 1296.6 1067 67.9
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 0.0e+00 1295.0 1050 65.9
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1290.0 1047 65.9
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 0.0e+00 1285.8 1058 66.3
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 0.0e+00 1285.4 1052 65.7
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 0.0e+00 1280.0 1031 68.3
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 0.0e+00 1276.5 1046 67.3
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 0.0e+00 1276.2 1047 65.0
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1271.5 1047 64.7
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 0.0e+00 1270.8 1055 67.4
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 0.0e+00 1266.9 1057 67.8
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 0.0e+00 1266.1 1073 65.1
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 0.0e+00 1266.1 1046 64.4
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 0.0e+00 1263.4 1046 66.6
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 0.0e+00 1260.7 1078 66.0
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 0.0e+00 1257.3 1050 65.5
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 0.0e+00 1256.5 1058 66.4
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 0.0e+00 1252.3 1049 65.2
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 0.0e+00 1251.9 1052 66.2
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 0.0e+00 1250.0 1052 66.3
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 0.0e+00 1249.6 1046 64.1
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 0.0e+00 1238.0 1131 62.1
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 0.0e+00 1237.2 1079 65.2
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 0.0e+00 1233.8 1047 66.5
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 0.0e+00 1228.4 1048 63.3
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 0.0e+00 1226.5 1046 63.5
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 0.0e+00 1225.7 1048 62.4
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1225.3 1051 64.6
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1225.3 1048 62.7
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 0.0e+00 1223.0 1052 64.1
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 0.0e+00 1223.0 1057 64.1
MSTRG.2779 Avicennia marina HOM05D003588 ORTHO05D004252 0.0e+00 1219.5 1031 65.0
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 0.0e+00 1218.4 1054 66.4
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 0.0e+00 1213.0 1052 63.9
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 0.0e+00 1213.0 1082 62.1
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 0.0e+00 1201.0 1050 65.7
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 0.0e+00 1198.7 1023 66.4
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 0.0e+00 1196.0 1044 61.3
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1193.7 1110 60.8
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 0.0e+00 1193.3 1054 61.6
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 0.0e+00 1191.0 1031 66.0
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 0.0e+00 1184.5 1051 63.7
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 0.0e+00 1182.9 1060 62.7
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1181.8 1103 60.9
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 0.0e+00 1175.6 1050 63.0
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 0.0e+00 1172.5 1032 62.8
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 0.0e+00 1171.8 1034 63.7
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 0.0e+00 1169.1 1028 63.8
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1164.8 1054 61.1
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1164.8 1054 61.1
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 0.0e+00 1163.7 1049 61.7
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 0.0e+00 1163.7 1025 63.6
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 0.0e+00 1161.4 1048 63.0
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 0.0e+00 1161.0 1048 63.4
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 0.0e+00 1157.1 1049 61.3
Lsat_1_v5_gn_4_155600 Lactuca sativa HOM05D003588 ORTHO05D004252 0.0e+00 1156.7 1031 62.9
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 0.0e+00 1150.2 1029 61.9
HanXRQChr09g0262691 Helianthus annuus HOM05D003588 ORTHO05D004252 0.0e+00 1149.0 1028 64.7
AUR62009039 Chenopodium quinoa HOM05D003588 ORTHO05D004252 0.0e+00 1145.6 1034 60.2
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 0.0e+00 1144.8 1048 62.7
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 0.0e+00 1144.4 1062 62.4
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 0.0e+00 1143.6 1049 60.8
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 0.0e+00 1142.5 1049 62.2
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 0.0e+00 1142.1 1050 62.6
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 0.0e+00 1135.9 1389 51.5
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 0.0e+00 1130.5 1049 62.1
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 0.0e+00 1129.8 1058 61.2
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 0.0e+00 1128.2 1031 59.0
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 0.0e+00 1126.7 1050 58.7
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 0.0e+00 1125.5 1051 61.0
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 0.0e+00 1124.8 1078 58.8
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1115.5 1078 59.6
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 0.0e+00 1112.4 1011 60.0
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 0.0e+00 1101.7 1047 58.4
Sc10g0001060 Simmondsia chinensis HOM05D003588 ORTHO05D004252 0.0e+00 1101.3 983 62.6
ATR0681G033 Amborella trichopoda HOM05D003588 ORTHO05D004252 0.0e+00 1100.9 1037 60.5
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 0.0e+00 1083.9 1051 60.6
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 0.0e+00 1076.6 1050 59.8
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 1.4e-311 1072.8 1019 59.9
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 1.3e-308 1063.1 1050 59.3
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 1.3e-308 1063.1 1014 60.1
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 6.6e-308 1060.8 1055 55.5
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 3.6e-306 1055.0 1089 55.0
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 1.6e-298 1029.6 1057 57.5
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 2.4e-297 1025.8 1060 56.4
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 8.4e-295 1017.3 1060 55.0
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 1.2e-293 1013.4 1108 54.1
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 2.8e-290 1002.3 883 61.0
MBI16_g39817_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 1.3e-287 993.4 840 65.6
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 1.0e-276 957.2 1057 53.7
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 1.9e-267 926.4 1086 50.9
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 4.3e-267 925.2 835 62.5
HPP92_020150 Vanilla planifolia HOM05D003588 ORTHO05D004252 1.1e-265 920.6 975 53.3
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 7.6e-264 914.4 879 58.0
CiPaw.04G044200 Carya illinoinensis HOM05D003588 ORTHO05D004252 3.0e-260 902.5 581 77.8
QL04p012047 Quercus lobata HOM05D003588 ORTHO05D004252 1.2e-256 890.6 642 71.8
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 4.5e-256 888.6 918 56.3
A02p03430 Brassica napus HOM05D003588 ORTHO05D004252 5.3e-249 865.1 739 61.8
Mapoly0103s0005 Marchantia polymorpha HOM05D003588 ORTHO05D004252 1.1e-241 840.9 1042 49.8
vmacro05528 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 1.8e-233 813.5 819 60.4
Pp3c18_21770 Physcomitrium patens HOM05D003588 ORTHO05D004252 3.4e-227 792.7 1047 44.3
Pp3c18_21850 Physcomitrium patens HOM05D003588 ORTHO05D004252 9.8e-227 791.2 1047 44.2
Dinv33964 Davidia involucrata HOM05D003588 ORTHO05D004252 2.7e-224 783.1 515 77.5
AagrBONN_evm.TU.Sc2ySwM_344.2595 Anthoceros agrestis HOM05D003588 ORTHO05D004252 4.0e-220 769.2 1044 46.3
MD17G1249700 Malus domestica HOM05D003588 ORTHO05D004252 3.1e-217 759.6 556 70.9
RcHm_v2.0_Chr3g0494111 Rosa chinensis HOM05D003588 ORTHO05D004252 1.3e-194 684.5 636 66.0
SMO356G0339 Selaginella moellendorffii HOM05D003588 ORTHO05D004252 2.2e-186 657.1 1009 40.7
Pp3c3_38010 Physcomitrium patens HOM05D003588 ORTHO05D004252 4.9e-186 656.0 1048 40.0
Aqoxy3G00198 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 5.4e-185 652.5 638 59.7
CDE09G1345 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 1.2e-179 634.8 783 49.3
CBR_g34722 Chara braunii HOM05D003588 ORTHO05D004252 1.0e-167 595.1 1252 36.8
Duzib133G0570 Durio zibethinus HOM05D003588 ORTHO05D004252 8.7e-167 592.0 414 70.0
Aqoxy3G00199 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 2.1e-160 570.9 408 71.1
RcHm_v2.0_Chr3g0494121 Rosa chinensis HOM05D003588 ORTHO05D004252 9.0e-156 555.4 396 69.2
Dinv33965 Davidia involucrata HOM05D003588 ORTHO05D004252 1.3e-149 535.0 522 59.6
MD17G1249200 Malus domestica HOM05D003588 ORTHO05D004252 1.1e-129 468.8 411 60.3
arahy.Tifrunner.gnm1.ann1.SZ4JBM Arachis hypogaea HOM05D003588 ORTHO05D009236 2.3e-98 364.8 398 52.8
TPR.G25232 Trifolium pratense HOM05D003588 ORTHO05D004252 3.6e-96 357.5 284 64.8
Zm00001eb341830 Zea mays HOM05D003588 ORTHO05D004252 1.8e-87 328.6 223 72.2
CAN.G1113.1 Capsicum annuum HOM05D003588 ORTHO05D004252 5.4e-84 317.0 373 50.7
FAN01G1795 Fragaria x ananassa HOM05D003588 ORTHO05D004252 9.9e-62 243.0 386 47.2
Zm00001eb341840 Zea mays HOM05D003588 ORTHO05D004252 2.1e-59 235.3 196 62.2
A10p22850 Brassica napus HOM05D003588 ORTHO05D004252 1.9e-57 228.8 220 54.1
FAN01G1119 Fragaria x ananassa HOM05D003588 ORTHO05D004252 8.1e-56 223.4 167 71.9
BcaC04g18898 Brassica carinata HOM05D003588 ORTHO05D004252 1.5e-54 219.2 224 57.6
BraA10t44352Z Brassica rapa HOM05D003588 ORTHO05D004252 1.7e-53 215.7 200 55.5
Psat1g004680 Pisum sativum HOM05D003588 ORTHO05D004252 8.7e-50 203.4 158 66.5
Thhalv10014979m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 9.3e-44 183.3 137 71.5
Gohir.A08G093462 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.3e-42 179.5 170 60.0
BcaB05g22772 Brassica carinata HOM05D003588 ORTHO05D004252 1.2e-38 166.4 200 49.5
Hma1.2p1_0391F.1_g142780 Hydrangea macrophylla HOM05D003588 ORTHO05D004252 3.0e-34 151.8 92 82.6
arahy.Tifrunner.gnm1.ann1.LXU3L0 Arachis hypogaea HOM05D003588 ORTHO05D004252 3.1e-31 141.7 151 54.3
Lalb_Chr00c03g0404241 Lupinus albus HOM05D003588 ORTHO05D004252 2.0e-30 139.0 111 63.1
C09p60810 Brassica napus HOM05D003588 ORTHO05D004252 1.6e-27 129.4 318 33.0
BolC9t58921H Brassica oleracea HOM05D003588 ORTHO05D004252 1.6e-27 129.4 318 33.0
Cre03.g205137 Chlamydomonas reinhardtii HOM05D003588 ORTHO05D004252 6.1e-27 127.5 193 35.8
QL04p012055 Quercus lobata HOM05D003588 ORTHO05D004252 1.8e-26 125.9 75 82.7
Lsat_1_v5_gn_9_96101 Lactuca sativa HOM05D003588 ORTHO05D004252 6.3e-24 117.5 93 68.8
Dinv12730 Davidia involucrata HOM05D003588 ORTHO05D004252 4.5e-22 111.3 61 88.5
Lalb_Chr00c03g0404231 Lupinus albus HOM05D003588 ORTHO05D004252 2.2e-21 109.0 104 46.2
arahy.Tifrunner.gnm1.ann1.3AG3I6 Arachis hypogaea HOM05D003588 ORTHO05D004252 2.9e-21 108.6 74 70.3
BcaB08g36855 Brassica carinata HOM05D003588 ORTHO05D004252 1.9e-20 105.9 122 56.6
Lsat_1_v5_gn_5_147680 Lactuca sativa HOM05D003588 ORTHO05D004252 7.4e-17 94.0 95 53.7
Aa31sc24G110 Aethionema arabicum HOM05D003588 ORTHO05D004252 2.2e-16 92.4 146 46.6
CSS0049688 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 7.7e-14 84.0 277 28.5
CDE09G0638 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 6.5e-13 80.9 62 67.7
MCO16G648 Micromonas commoda HOM05D003588 ORTHO05D004252 2.7e-11 75.5 298 24.5
AagrBONN_evm.TU.Sc2ySwM_228.5767 Anthoceros agrestis HOM05D003588 ORTHO05D004252 4.4e-09 68.2 77 48.1
Aqoxy1G03195 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 5.7e-09 67.8 69 49.3
TAR374G0202 Trochodendron aralioides HOM05D003588 ORTHO05D004252 9.7e-09 67.0 34 91.2
Ca_10866_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 1.3e-08 66.6 127 55.9
Lsat_1_v5_gn_1_73461 Lactuca sativa HOM05D003588 ORTHO05D004252 1.7e-08 66.2 95 40.0
TAR374G0225 Trochodendron aralioides HOM05D003588 ORTHO05D004252 2.2e-08 65.9 34 91.2
Ca_27564_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 2.4e-07 62.4 179 44.7
TPR.G213 Trifolium pratense HOM05D003588 ORTHO05D004252 5.3e-07 61.2 36 77.8


User provided reference genes

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