Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 3.0e-168 595.1 305 100.0
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 1.4e-157 559.7 298 97.3
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 9.4e-130 467.2 296 82.1
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 9.2e-109 397.5 304 70.7
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 3.3e-106 389.0 305 69.8
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 8.9e-96 354.4 316 66.5
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 1.1e-85 320.9 277 63.2
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 7.6e-71 271.6 300 52.0
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 8.4e-70 268.1 312 50.0
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 4.6e-68 262.3 314 49.4
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 5.8e-63 245.4 302 47.0
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 1.7e-62 243.8 316 46.2
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 2.9e-62 243.0 310 46.5
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 8.4e-62 241.5 300 45.7
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 1.2e-60 237.7 310 43.9
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 1.6e-60 237.3 310 43.5
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 2.1e-60 236.9 312 45.8
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 7.9e-60 235.0 301 45.8
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 1.8e-59 233.8 309 46.3
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.0e-59 233.0 319 42.6
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 5.1e-59 232.3 316 45.3
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 5.1e-59 232.3 316 45.3
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 8.7e-59 231.5 302 43.4
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 1.5e-58 230.7 314 45.5
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 1.9e-58 230.3 325 43.7
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 5.6e-58 228.8 316 45.6
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 7.4e-58 228.4 317 43.2
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.1e-57 226.9 323 41.5
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 8.2e-57 224.9 316 42.4
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 1.1e-56 224.6 296 45.6
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 1.8e-56 223.8 336 42.3
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 6.9e-56 221.9 299 43.8
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 2.6e-55 219.9 296 44.6
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 2.6e-55 219.9 301 43.5
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 4.5e-55 219.2 310 41.9
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 5.8e-55 218.8 295 44.4
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 1.3e-54 217.6 298 42.3
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 2.9e-54 216.5 305 42.6
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 3.8e-54 216.1 297 43.8
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 8.4e-54 214.9 304 42.1
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 7.1e-53 211.8 317 41.6
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 7.1e-53 211.8 317 41.6
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 1.2e-52 211.1 315 43.5
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 2.7e-52 209.9 303 41.9
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 3.5e-52 209.5 307 41.7
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.5e-52 209.5 317 41.3
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 4.6e-52 209.1 303 42.6
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.0e-51 208.0 297 45.5
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 1.3e-51 207.6 312 41.7
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 2.3e-51 206.8 314 43.9
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 3.0e-51 206.5 309 41.7
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 6.7e-51 205.3 305 39.7
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 8.7e-51 204.9 306 41.2
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 3.3e-50 203.0 304 42.1
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 7.4e-50 201.8 296 41.9
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 3.7e-49 199.5 300 41.3
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 1.1e-48 198.0 274 42.7
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 1.4e-48 197.6 290 42.4
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 1.4e-48 197.6 307 40.7
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 1.8e-48 197.2 316 38.3
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 2.4e-48 196.8 307 40.4
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 2.4e-48 196.8 307 41.7
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 2.4e-48 196.8 301 40.9
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 5.3e-48 195.7 366 37.7
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 6.9e-48 195.3 343 37.3
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 6.9e-48 195.3 331 37.2
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 9.0e-48 194.9 295 40.7
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 9.0e-48 194.9 310 41.9
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.2e-47 194.5 321 39.9
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 1.5e-47 194.1 304 40.1
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 2.0e-47 193.7 300 41.7
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 4.5e-47 192.6 300 39.7
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 5.9e-47 192.2 294 42.2
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 1.0e-46 191.4 300 39.7
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 1.3e-46 191.0 312 37.5
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 1.7e-46 190.7 310 41.0
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 2.2e-46 190.3 372 35.2
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 2.9e-46 189.9 311 38.6
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 5.0e-46 189.1 317 39.1
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 8.5e-46 188.3 329 37.1
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 1.4e-45 187.6 295 40.3
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 1.4e-45 187.6 295 40.3
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 1.9e-45 187.2 308 39.6
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 1.9e-45 187.2 307 38.8
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 2.5e-45 186.8 296 40.2
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 2.5e-45 186.8 325 39.1
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 4.2e-45 186.0 315 38.4
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 9.3e-45 184.9 313 39.3
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 9.3e-45 184.9 313 38.3
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 3.6e-44 183.0 336 35.4
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 7.9e-44 181.8 354 35.6
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 1.0e-43 181.4 313 38.7
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 1.0e-43 181.4 295 40.7
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 3.0e-43 179.9 314 41.1
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 3.0e-43 179.9 327 36.7
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 1.9e-42 177.2 295 39.0
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 2.5e-42 176.8 292 39.4
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 1.3e-41 174.5 304 39.1
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 1.4e-40 171.0 303 35.6
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 1.8e-40 170.6 404 31.9
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 2.0e-39 167.2 318 36.8
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 1.9e-37 160.6 297 38.0
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 2.1e-36 157.1 304 36.2
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 1.4e-35 154.5 316 36.1
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 1.8e-35 154.1 295 37.6
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 8.8e-35 151.8 286 36.0
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 3.3e-34 149.8 306 34.0
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 7.4e-34 148.7 230 38.7
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 2.2e-33 147.1 303 34.7
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 5.3e-32 142.5 217 40.6
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 9.1e-32 141.7 321 33.6
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 6.5e-30 135.6 226 37.6
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 1.0e-27 128.3 211 41.7
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 3.9e-27 126.3 220 39.5
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 5.2e-27 125.9 247 35.6
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 2.0e-26 124.0 295 32.2
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 3.3e-26 123.2 128 50.0
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 9.7e-26 121.7 318 32.1
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 2.0e-23 114.0 203 36.5
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 1.7e-22 110.9 93 55.9
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 1.0e-19 101.7 257 32.3
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.0e-19 99.8 229 31.9
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 6.7e-19 99.0 225 30.7
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 8.2e-17 92.0 360 26.4
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 1.1e-16 91.7 292 26.4
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 4.1e-16 89.7 99 46.5
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 3.5e-15 86.7 141 34.8
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 8.5e-14 82.0 137 38.7
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 1.9e-13 80.9 70 57.1
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 2.5e-13 80.5 220 30.9
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 2.5e-13 80.5 357 25.2
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 1.6e-12 77.8 126 34.9
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 3.6e-12 76.6 126 39.7
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 3.6e-12 76.6 318 27.4
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 8.0e-12 75.5 238 28.2
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 5.2e-11 72.8 148 34.5
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.4e-10 70.1 210 28.1
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 7.5e-10 68.9 101 36.6
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.7e-09 66.6 55 63.6
Mapoly0019s0119 Marchantia polymorpha HOM05D001447 ORTHO05D005923 4.8e-09 66.2 322 24.8
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 1.4e-08 64.7 58 51.7
FvH4_7g24870 Fragaria vesca HOM05D021264 ORTHO05D022594 1.3e-06 58.2 81 37.0
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 1.3e-06 58.2 95 31.6


User provided reference genes

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