Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 5.4e-139 497.7 251 100.0
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 2.7e-130 468.8 251 95.2
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 6.6e-129 464.2 251 93.6
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 2.7e-106 389.0 279 76.0
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 3.6e-87 325.5 245 69.0
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 4.0e-86 322.0 244 70.1
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.9e-83 313.2 252 68.7
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 3.2e-83 312.4 236 69.5
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 4.6e-82 308.5 236 69.9
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 2.5e-80 302.8 253 65.6
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.6e-80 301.6 243 68.7
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 2.1e-79 299.7 231 67.1
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.4e-78 296.2 238 65.1
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 4.9e-76 288.5 242 62.8
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.1e-75 287.3 199 72.9
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 5.5e-75 285.0 225 64.0
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 7.1e-75 284.6 240 61.2
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.1e-74 283.1 234 67.9
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 7.9e-74 281.2 249 62.2
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 7.9e-74 281.2 236 64.4
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 1.3e-73 280.4 233 64.8
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 5.1e-73 278.5 234 65.4
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 8.7e-73 277.7 246 61.0
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 3.7e-71 272.3 242 58.3
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 3.7e-71 272.3 237 61.2
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 6.2e-71 271.6 242 61.2
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 6.2e-71 271.6 242 61.2
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 6.2e-71 271.6 239 60.3
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 8.2e-71 271.2 204 66.2
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.8e-70 270.0 242 60.7
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 2.4e-70 269.6 179 74.3
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 6.9e-70 268.1 206 65.5
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.9e-70 268.1 171 83.6
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.5e-69 266.9 245 59.6
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.0e-69 266.5 192 70.8
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 4.5e-69 265.4 236 58.5
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 7.6e-69 264.6 245 57.6
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 7.6e-69 264.6 219 62.6
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 1.3e-68 263.8 215 63.7
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 2.2e-68 263.1 200 66.5
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 3.8e-68 262.3 237 57.0
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 3.8e-68 262.3 237 57.4
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 6.5e-68 261.5 225 60.4
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 6.5e-68 261.5 252 55.2
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 1.4e-67 260.4 182 70.3
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 1.9e-67 260.0 244 55.7
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 2.5e-67 259.6 234 61.5
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 3.2e-67 259.2 245 58.8
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 7.2e-67 258.1 207 60.4
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 7.2e-67 258.1 244 58.6
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 9.3e-67 257.7 236 57.2
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 1.6e-66 256.9 246 56.9
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.6e-66 256.9 178 72.5
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 2.7e-66 256.1 214 63.1
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 3.5e-66 255.8 238 57.6
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 6.1e-66 255.0 237 56.1
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 1.0e-65 254.2 184 67.9
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 1.0e-65 254.2 184 67.9
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.0e-65 254.2 182 69.8
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 1.8e-65 253.4 240 58.8
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 2.3e-65 253.1 244 56.6
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 3.0e-65 252.7 200 62.5
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 3.0e-65 252.7 205 62.0
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 3.0e-65 252.7 185 68.6
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 3.9e-65 252.3 234 57.7
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 3.9e-65 252.3 187 66.3
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 3.9e-65 252.3 248 56.5
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 5.1e-65 251.9 178 70.8
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 5.1e-65 251.9 187 66.3
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 6.7e-65 251.5 242 55.0
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 6.7e-65 251.5 242 55.0
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 6.7e-65 251.5 224 58.0
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 8.7e-65 251.1 207 61.8
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 2.5e-64 249.6 234 57.3
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 4.3e-64 248.8 227 59.9
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 4.3e-64 248.8 206 61.7
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 7.4e-64 248.1 241 60.2
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 1.6e-63 246.9 175 69.7
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 6.3e-63 245.0 241 57.7
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 1.1e-62 244.2 242 55.0
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 1.4e-62 243.8 222 56.3
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 1.4e-62 243.8 191 62.3
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 4.1e-62 242.3 151 78.8
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 6.9e-62 241.5 151 78.1
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 6.9e-62 241.5 239 54.4
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 9.0e-62 241.1 237 53.6
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 9.0e-62 241.1 238 53.8
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.5e-61 240.4 203 59.1
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 1.5e-61 240.4 246 54.1
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 2.0e-61 240.0 251 56.2
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.0e-61 240.0 205 62.0
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 3.4e-61 239.2 239 54.0
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 3.4e-61 239.2 236 54.7
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 4.5e-61 238.8 234 55.6
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 7.7e-61 238.0 226 57.5
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.0e-60 237.7 143 79.0
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 1.7e-60 236.9 172 65.7
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 2.2e-60 236.5 197 59.9
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.9e-60 236.1 237 56.5
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 3.8e-60 235.7 241 50.6
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 3.8e-60 235.7 192 65.1
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 8.5e-60 234.6 151 77.5
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 2.5e-59 233.0 197 59.4
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 2.5e-59 233.0 234 50.9
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 2.5e-59 233.0 169 69.2
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 3.2e-59 232.6 236 53.8
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 4.2e-59 232.3 144 74.3
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 5.5e-59 231.9 236 51.7
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 7.2e-59 231.5 238 53.4
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 1.6e-58 230.3 224 58.0
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 2.7e-58 229.6 174 62.6
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 3.6e-58 229.2 134 80.6
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 7.9e-58 228.0 234 53.0
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 1.0e-57 227.6 195 56.9
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 1.4e-57 227.3 162 69.8
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 1.8e-57 226.9 241 50.6
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 1.8e-57 226.9 141 73.8
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 3.0e-57 226.1 173 63.6
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 3.9e-57 225.7 150 70.7
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 2.0e-53 213.4 202 54.5
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 3.4e-53 212.6 148 67.6
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 1.3e-52 210.7 206 57.3
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 2.7e-50 203.0 202 58.4
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 5.1e-49 198.7 119 78.2
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 6.7e-49 198.4 183 56.8
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 4.4e-48 195.7 207 56.5
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.7e-47 193.7 152 62.5
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 2.6e-45 186.4 143 61.5
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 3.5e-45 186.0 196 52.0
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 3.5e-45 186.0 199 49.2
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 7.7e-45 184.9 143 63.6
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.9e-43 180.3 141 59.6
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 2.5e-43 179.9 200 52.5
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 7.2e-43 178.3 139 56.8
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 2.6e-40 169.9 238 46.2
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 3.3e-40 169.5 137 62.8
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.3e-39 167.5 216 45.4
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 3.5e-37 159.5 130 62.3
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 1.0e-36 157.9 127 68.5
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 3.2e-35 152.9 216 40.7
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 1.4e-33 147.5 150 56.0
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 5.0e-28 129.0 152 47.4
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.2e-24 117.9 172 45.3
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 8.3e-23 111.7 144 46.5
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 9.2e-22 108.2 79 63.3
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 3.5e-21 106.3 138 40.6
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 2.3e-17 93.6 186 32.3
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 8.9e-17 91.7 131 38.2
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 2.7e-13 80.1 145 33.1
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.6e-13 79.3 97 45.4
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.7e-12 77.4 149 31.5
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.5e-11 73.6 150 33.3
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.1e-10 70.5 118 33.9
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.6e-10 69.7 82 51.2
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 1.8e-09 67.4 92 45.7
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 1.5e-08 64.3 126 30.2


User provided reference genes

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