Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g085937.1 Solanum lycopersicum HOM05D006402 ORTHO05D008099 7.5e-98 360.5 183 100.0
Sopen02g030620 Solanum pennellii HOM05D006402 ORTHO05D008099 4.1e-80 301.6 158 95.6
Sopen04g035580 Solanum pennellii HOM05D006402 ORTHO05D008099 1.5e-74 283.1 158 91.8
Solyc04g081940.3 Solanum lycopersicum HOM05D006402 ORTHO05D008099 5.8e-74 281.2 158 91.1
PGSC0003DMG400009954 Solanum tuberosum HOM05D006402 ORTHO05D008099 4.9e-73 278.1 158 90.5
CAN.G311.71 Capsicum annuum HOM05D006402 ORTHO05D008099 3.2e-72 275.4 158 88.0
PGSC0003DMG400012651 Solanum tuberosum HOM05D006402 ORTHO05D008099 3.4e-66 255.4 135 95.6
Nitab4.5_0003030g0100 Nicotiana tabacum HOM05D006402 ORTHO05D008099 2.2e-65 252.7 158 79.7
Peaxi162Scf00174g00075 Petunia axillaris HOM05D006402 ORTHO05D008099 9.2e-64 247.3 154 77.9
Cc10_g01150 Coffea canephora HOM05D006402 ORTHO05D008099 3.9e-54 215.3 149 71.8
Manes.05G142900 Manihot esculenta HOM05D006402 ORTHO05D008099 1.9e-53 213.0 153 69.3
Lj4C17T8 Lonicera japonica HOM05D006402 ORTHO05D008099 2.4e-51 206.1 155 64.5
Rhsim07G0248600 Rhododendron simsii HOM05D006402 ORTHO05D008099 6.8e-51 204.5 147 68.0
CSS0047659 Camellia sinensis var. sinensis HOM05D006402 ORTHO05D008099 5.8e-50 201.4 156 65.4
TAR628G1405 Trochodendron aralioides HOM05D006402 ORTHO05D008099 5.8e-50 201.4 155 64.5
Hma1.2p1_0023F.1_g015780 Hydrangea macrophylla HOM05D006402 ORTHO05D008099 3.8e-49 198.7 154 63.6
COL.COLO4_26087 Corchorus olitorius HOM05D006402 ORTHO05D008099 8.4e-49 197.6 147 68.0
Gohir.A06G001000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 1.1e-48 197.2 123 75.6
DCAR_007723 Daucus carota HOM05D006402 ORTHO05D008099 4.1e-48 195.3 146 63.7
Duzib093G1673 Durio zibethinus HOM05D006402 ORTHO05D008099 4.1e-48 195.3 125 74.4
AUR62016156 Chenopodium quinoa HOM05D006402 ORTHO05D008099 5.4e-48 194.9 125 76.0
Dinv18455 Davidia involucrata HOM05D006402 ORTHO05D008099 5.4e-48 194.9 153 65.4
PGR142G1353 Punica granatum HOM05D006402 ORTHO05D008099 5.4e-48 194.9 158 61.4
Nn6g34597 Nelumbo nucifera HOM05D006402 ORTHO05D008099 9.2e-48 194.1 132 71.2
Gorai.010G001200 Gossypium raimondii HOM05D006402 ORTHO05D008099 1.2e-47 193.7 123 74.0
Potri.002G016600 Populus trichocarpa HOM05D006402 ORTHO05D008099 1.6e-47 193.4 151 60.9
SalBow6G2408 Salvia bowleyana HOM05D006402 ORTHO05D008099 2.1e-47 193.0 132 72.7
CiPaw.08G069100 Carya illinoinensis HOM05D006402 ORTHO05D008099 4.6e-47 191.8 126 73.8
AUR62036301 Chenopodium quinoa HOM05D006402 ORTHO05D008099 4.6e-47 191.8 121 76.0
MELO3C011341.2 Cucumis melo HOM05D006402 ORTHO05D008099 4.6e-47 191.8 147 63.3
MSTRG.1145 Avicennia marina HOM05D006402 ORTHO05D008099 6.0e-47 191.4 164 61.6
Aa31LG4G6170 Aethionema arabicum HOM05D006402 ORTHO05D008099 7.8e-47 191.0 156 66.0
SGA_v2.0_scaffold292G47394 Striga asiatica HOM05D006402 ORTHO05D008099 7.8e-47 191.0 159 60.4
Haze_22699 Corylus avellana HOM05D006402 ORTHO05D008099 1.3e-46 190.3 126 72.2
SalBow7G2419 Salvia bowleyana HOM05D006402 ORTHO05D008099 1.3e-46 190.3 129 73.6
Migut.C00897 Erythranthe guttata HOM05D006402 ORTHO05D008099 3.0e-46 189.1 130 70.8
Sed0012705 Sechium edule HOM05D006402 ORTHO05D008099 3.0e-46 189.1 128 68.8
Gorai.006G031900 Gossypium raimondii HOM05D006402 ORTHO05D008099 3.9e-46 188.7 123 75.6
Sc02g0008870 Simmondsia chinensis HOM05D006402 ORTHO05D008099 3.9e-46 188.7 155 64.5
Aqoxy6G00455 Aquilegia oxysepala HOM05D006402 ORTHO05D008099 5.1e-46 188.3 152 62.5
Sp5g31180 Schrenkiella parvula HOM05D006402 ORTHO05D008099 5.1e-46 188.3 151 67.5
ClCG08G014030 Citrullus lanatus HOM05D006402 ORTHO05D008099 6.6e-46 188.0 125 70.4
MD08G1008000 Malus domestica HOM05D006402 ORTHO05D008099 6.6e-46 188.0 168 60.1
arahy.Tifrunner.gnm1.ann1.KWDT0T Arachis hypogaea HOM05D006402 ORTHO05D008099 8.7e-46 187.6 122 69.7
A07p41620 Brassica napus HOM05D006402 ORTHO05D008099 8.7e-46 187.6 152 64.5
BraA07t31691Z Brassica rapa HOM05D006402 ORTHO05D008099 8.7e-46 187.6 152 64.5
Gohir.A09G028000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 8.7e-46 187.6 155 63.2
Sabra02G0013300 Salix brachista HOM05D006402 ORTHO05D008099 8.7e-46 187.6 151 60.3
Cpa.g.sc81.101 Carica papaya HOM05D006402 ORTHO05D008099 1.1e-45 187.2 156 61.5
A02p20400 Brassica napus HOM05D006402 ORTHO05D008099 1.5e-45 186.8 151 65.6
Thhalv10019271m.g Eutrema salsugineum HOM05D006402 ORTHO05D008099 1.9e-45 186.4 152 66.4
BcaC08g47098 Brassica carinata HOM05D006402 ORTHO05D008099 2.5e-45 186.0 159 64.8
Cfa014004 Carpinus fangiana HOM05D006402 ORTHO05D008099 2.5e-45 186.0 123 72.4
Thecc.08G051300 Theobroma cacao HOM05D006402 ORTHO05D008099 2.5e-45 186.0 152 63.8
CARHR069600 Cardamine hirsuta HOM05D006402 ORTHO05D008099 3.3e-45 185.7 152 65.1
AL2G36080 Arabidopsis lyrata HOM05D006402 ORTHO05D008099 4.3e-45 185.3 152 65.8
BolC6t40039H Brassica oleracea HOM05D006402 ORTHO05D008099 4.3e-45 185.3 160 61.9
Ciclev10002722m.g Citrus clementina HOM05D006402 ORTHO05D008099 5.6e-45 184.9 125 69.6
THA.LOC104811442 Tarenaya hassleriana HOM05D006402 ORTHO05D008099 5.6e-45 184.9 159 59.1
QL02p012927 Quercus lobata HOM05D006402 ORTHO05D008099 7.3e-45 184.5 123 72.4
EL10Ac1g02084 Beta vulgaris HOM05D006402 ORTHO05D008099 9.6e-45 184.1 121 71.9
Prupe.1G359800 Prunus persica HOM05D006402 ORTHO05D008099 1.2e-44 183.7 126 69.8
C06p50000 Brassica napus HOM05D006402 ORTHO05D008099 1.6e-44 183.3 160 61.2
Carub.0002s2294 Capsella rubella HOM05D006402 ORTHO05D008099 1.6e-44 183.3 152 64.5
HanXRQChr14g0429471 Helianthus annuus HOM05D006402 ORTHO05D008099 1.6e-44 183.3 129 69.0
ECA238G1428 Erigeron canadensis HOM05D006402 ORTHO05D008099 2.1e-44 183.0 158 60.8
Sed0017306 Sechium edule HOM05D006402 ORTHO05D008099 2.1e-44 183.0 128 65.6
unitig_32.g11245 Utricularia gibba HOM05D006402 ORTHO05D008099 2.1e-44 183.0 123 74.0
CANSAT25G3089 Cannabis sativa HOM05D006402 ORTHO05D008099 4.7e-44 181.8 127 69.3
Atru.chr13.220 Acer truncatum HOM05D006402 ORTHO05D008099 8.1e-44 181.0 125 69.6
AT1G76060 Arabidopsis thaliana HOM05D006402 ORTHO05D008099 8.1e-44 181.0 152 65.1
PSO675G2459 Papaver somniferum HOM05D006402 ORTHO05D008099 8.1e-44 181.0 127 70.9
arahy.Tifrunner.gnm1.ann1.R93WT9 Arachis hypogaea HOM05D006402 ORTHO05D008099 1.1e-43 180.6 129 65.1
TWI14G1330 Tripterygium wilfordii HOM05D006402 ORTHO05D008099 4.0e-43 178.7 157 57.3
CDE05G2406 Ceratophyllum demersum HOM05D000228 ORTHO05D001122 9.0e-43 177.6 156 61.5
Sc02g0008830 Simmondsia chinensis HOM05D006402 ORTHO05D008099 2.0e-42 176.4 125 72.0
Eucgr.F01698 Eucalyptus grandis HOM05D006402 ORTHO05D008099 3.4e-42 175.6 155 61.3
Lalb_Chr23g0266011 Lupinus albus HOM05D006402 ORTHO05D008099 3.4e-42 175.6 126 65.9
PSO541G5119 Papaver somniferum HOM05D006402 ORTHO05D008099 3.4e-42 175.6 126 68.3
RcHm_v2.0_Chr6g0303641 Rosa chinensis HOM05D006402 ORTHO05D008099 2.9e-41 172.6 123 69.1
MBI03_g11314_MAGBIO Magnolia biondii HOM05D006402 ORTHO05D008099 4.9e-41 171.8 118 67.8
FvH4_2g37980 Fragaria vesca HOM05D006402 ORTHO05D008099 6.4e-41 171.4 123 68.3
FAN20G3208 Fragaria x ananassa HOM05D006402 ORTHO05D008099 6.4e-41 171.4 123 68.3
FAN27G3062 Fragaria x ananassa HOM05D006402 ORTHO05D008099 8.4e-41 171.0 123 68.3
HPP92_013449 Vanilla planifolia HOM05D006402 ORTHO05D008099 1.6e-39 166.8 122 65.6
CsaV3_2G024420 Cucumis sativus L. HOM05D006402 ORTHO05D008099 2.7e-39 166.0 148 57.4
Ca_13483_v3 Cicer arietinum L. HOM05D006402 ORTHO05D008099 7.8e-39 164.5 126 63.5
VMungo0647G0728 Vigna mungo HOM05D006402 ORTHO05D008099 1.0e-38 164.1 138 57.2
Actinidia29765 Actinidia chinensis HOM05D006402 ORTHO05D008099 2.3e-38 162.9 153 56.2
Lsat_1_v5_gn_2_6761 Lactuca sativa HOM05D006402 ORTHO05D008099 5.1e-38 161.8 156 57.1
Glyma.17G261100 Glycine max HOM05D006402 ORTHO05D008099 1.1e-37 160.6 116 67.2
ATR0680G026 Amborella trichopoda HOM05D006402 ORTHO05D008099 1.5e-37 160.2 124 66.1
ATR0580G246 Amborella trichopoda HOM05D006402 ORTHO05D008099 1.9e-37 159.8 124 66.9
Phvul.001G003000 Phaseolus vulgaris HOM05D006402 ORTHO05D008099 3.3e-37 159.1 128 59.4
Lj5g0026723 Lotus japonicus HOM05D006402 ORTHO05D008099 4.3e-37 158.7 156 53.8
Glyma.09G042800 Glycine max HOM05D006402 ORTHO05D008099 3.6e-36 155.6 116 64.7
SEGI_22650 Sequoiadendron giganteum HOM05D006402 ORTHO05D008099 3.6e-36 155.6 129 57.4
Gohir.D09G027401 Gossypium hirsutum HOM05D006402 ORTHO05D008099 6.2e-36 154.8 123 62.6
Psat6g001160 Pisum sativum HOM05D006402 ORTHO05D008099 1.4e-35 153.7 130 58.5
TPR.G26406 Trifolium pratense HOM05D006402 ORTHO05D008099 6.9e-35 151.4 125 60.0
Zm00001eb002920 Zea mays HOM05D006402 ORTHO05D008099 5.8e-34 148.3 128 58.6
Os03g0136600 Oryza sativa ssp. japonica HOM05D006402 ORTHO05D008099 9.9e-34 147.5 133 56.4
SHI08020 Sapria himalayana HOM05D006402 ORTHO05D008099 1.3e-33 147.1 121 58.7
Medtr1g026078 Medicago truncatula HOM05D006402 ORTHO05D008099 6.4e-33 144.8 122 59.0
BcaC03g15641 Brassica carinata HOM05D006402 ORTHO05D008099 1.1e-32 144.1 150 54.7
Pp3c14_25160 Physcomitrium patens HOM05D006402 ORTHO05D008099 2.3e-30 136.3 128 50.8
SMO358G0213 Selaginella moellendorffii HOM05D006402 ORTHO05D008099 3.7e-28 129.0 120 51.7
BolC2t09355H Brassica oleracea HOM05D006402 ORTHO05D008099 1.2e-26 124.0 150 48.7
AagrBONN_evm.TU.Sc2ySwM_228.4698 Anthoceros agrestis HOM05D006402 ORTHO05D008099 1.5e-26 123.6 112 55.4
C02p33500 Brassica napus HOM05D006402 ORTHO05D008099 1.5e-26 123.6 150 48.7
BcaC08g47099 Brassica carinata HOM05D006402 ORTHO05D008099 8.4e-25 117.9 109 59.6
BraA02t07072Z Brassica rapa HOM05D006402 ORTHO05D008099 4.2e-24 115.5 150 44.7
PRCOL_00001167 Prasinoderma coloniale HOM05D006402 ORTHO05D008099 4.6e-23 112.1 90 58.9
CBR_g51533 Chara braunii HOM05D006402 ORTHO05D008099 8.7e-22 107.8 116 49.1
Mapoly0186s0006 Marchantia polymorpha HOM05D006402 ORTHO05D008099 3.3e-21 105.9 93 52.7
QL08p014343 Quercus lobata HOM05D006402 ORTHO05D008099 4.3e-21 105.5 123 49.6
MCO02G370 Micromonas commoda HOM05D006402 ORTHO05D008099 1.0e-17 94.4 81 54.3
MD15G1006900 Malus domestica HOM05D006402 ORTHO05D008099 1.7e-17 93.6 91 53.8
Eucgr.F01697 Eucalyptus grandis HOM05D006402 ORTHO05D008099 8.4e-17 91.3 99 46.5
BcaC08g47297 Brassica carinata HOM05D006402 ORTHO05D008099 2.5e-16 89.7 155 38.7
Cre01.g028150 Chlamydomonas reinhardtii HOM05D006402 ORTHO05D008099 8.7e-14 81.3 110 36.4
Sed0026898 Sechium edule HOM05D006402 ORTHO05D008099 2.8e-12 76.3 114 41.2
Glyma.14G222200 Glycine max HOM05D006402 ORTHO05D008099 4.1e-11 72.4 56 67.9
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 1.7e-09 67.0 49 75.5
SEGI_35230 Sequoiadendron giganteum HOM05D006402 ORTHO05D387249 6.7e-06 55.1 49 46.9


User provided reference genes

Program Settings