Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g085850.1 Solanum lycopersicum HOM05D005340 ORTHO05D006693 7.2e-86 320.5 154 100.0
Sopen02g030540 Solanum pennellii HOM05D005340 ORTHO05D006693 6.3e-74 280.8 134 99.3
PGSC0003DMG400012671 Solanum tuberosum HOM05D005340 ORTHO05D006693 1.7e-71 272.7 134 96.3
CAN.G625.8 Capsicum annuum HOM05D005340 ORTHO05D006693 4.2e-70 268.1 134 95.5
Nitab4.5_0001569g0090 Nicotiana tabacum HOM05D005340 ORTHO05D006693 1.5e-67 259.6 134 91.0
Nitab4.5_0005199g0080 Nicotiana tabacum HOM05D005340 ORTHO05D006693 8.3e-66 253.8 134 88.8
Peaxi162Scf00814g00221 Petunia axillaris HOM05D005340 ORTHO05D006693 3.2e-57 225.3 135 80.0
Cc07_g08850 Coffea canephora HOM05D005340 ORTHO05D006693 2.0e-56 222.6 132 75.8
Oeu030776.1 Olea europaea HOM05D005340 ORTHO05D006693 4.6e-56 221.5 134 73.1
FAN04G0654 Fragaria x ananassa HOM05D005340 ORTHO05D006693 6.1e-53 211.1 132 70.5
FAN13G0075 Fragaria x ananassa HOM05D005340 ORTHO05D006693 6.1e-53 211.1 132 70.5
CiPaw.06G148800 Carya illinoinensis HOM05D005340 ORTHO05D006693 1.0e-52 210.3 135 70.4
FAN08G3454 Fragaria x ananassa HOM05D005340 ORTHO05D006693 1.4e-52 209.9 132 69.7
Gohir.D09G205800 Gossypium hirsutum HOM05D005340 ORTHO05D006693 1.4e-52 209.9 132 70.5
GSVIVG01031043001 Vitis vinifera HOM05D005340 ORTHO05D006693 1.8e-52 209.5 134 70.9
FvH4_5g30090 Fragaria vesca HOM05D005340 ORTHO05D006693 2.3e-52 209.1 137 68.6
Ciclev10011466m.g Citrus clementina HOM05D005340 ORTHO05D006693 3.1e-52 208.8 137 70.1
Gorai.006G229700 Gossypium raimondii HOM05D005340 ORTHO05D006693 4.0e-52 208.4 132 70.5
Prupe.1G562700 Prunus persica HOM05D005340 ORTHO05D006693 4.0e-52 208.4 143 69.2
FAN18G2890 Fragaria x ananassa HOM05D001225 ORTHO05D006693 6.8e-52 207.6 137 67.9
Thecc.04G135300 Theobroma cacao HOM05D005340 ORTHO05D006693 2.6e-51 205.7 132 69.7
Gohir.A09G212300 Gossypium hirsutum HOM05D005340 ORTHO05D006693 3.4e-51 205.3 134 70.1
Atru.chr1.1714 Acer truncatum HOM05D005340 ORTHO05D006693 4.4e-51 204.9 133 69.9
Migut.H00210 Erythranthe guttata HOM05D005340 ORTHO05D006693 4.4e-51 204.9 131 68.7
Manes.01G109700 Manihot esculenta HOM05D005340 ORTHO05D006693 5.8e-51 204.5 138 70.3
Actinidia17633 Actinidia chinensis HOM05D005340 ORTHO05D006693 7.5e-51 204.1 134 71.6
COL.COLO4_05461 Corchorus olitorius HOM05D005340 ORTHO05D006693 9.8e-51 203.8 132 68.2
QL02p098613 Quercus lobata HOM05D005340 ORTHO05D006693 9.8e-51 203.8 131 69.5
Lalb_Chr06g0174621 Lupinus albus HOM05D005340 ORTHO05D006693 2.2e-50 202.6 132 65.9
CSS0006515 Camellia sinensis var. sinensis HOM05D005340 ORTHO05D006693 2.9e-50 202.2 134 68.7
CiPaw.05G042900 Carya illinoinensis HOM05D005340 ORTHO05D006693 2.9e-50 202.2 135 68.1
Lj2A443T58 Lonicera japonica HOM05D005340 ORTHO05D006693 2.9e-50 202.2 126 72.2
vmacro18081 Vaccinium macrocarpon HOM05D005340 ORTHO05D006693 3.7e-50 201.8 136 69.1
Duzib151G0269 Durio zibethinus HOM05D005340 ORTHO05D006693 4.9e-50 201.4 133 66.9
Rhsim08G0081700 Rhododendron simsii HOM05D005340 ORTHO05D006693 4.9e-50 201.4 134 69.4
Lj2g0006310 Lotus japonicus HOM05D005340 ORTHO05D006693 6.4e-50 201.1 134 67.2
Sc10g0001220 Simmondsia chinensis HOM05D005340 ORTHO05D006693 6.4e-50 201.1 134 68.7
AUR62023320 Chenopodium quinoa HOM05D005340 ORTHO05D006693 1.1e-49 200.3 121 71.9
Glyma.13G046500 Glycine max HOM05D005340 ORTHO05D006693 1.9e-49 199.5 134 68.7
VMungo1127G2281 Vigna mungo HOM05D005340 ORTHO05D006693 1.9e-49 199.5 131 70.2
Hund16143 Selenicereus undatus HOM05D005340 ORTHO05D006693 2.4e-49 199.1 134 68.7
Lsat_1_v5_gn_4_153740 Lactuca sativa HOM05D005340 ORTHO05D006693 4.1e-49 198.4 134 68.7
ECA232G2508 Erigeron canadensis HOM05D005340 ORTHO05D006693 5.4e-49 198.0 134 66.4
SalBow3G0764 Salvia bowleyana HOM05D005340 ORTHO05D006693 5.4e-49 198.0 141 63.8
TWI77G0603 Tripterygium wilfordii HOM05D005340 ORTHO05D006693 5.4e-49 198.0 114 72.8
THA.LOC104823863 Tarenaya hassleriana HOM05D005340 ORTHO05D006693 7.0e-49 197.6 114 74.6
AUR62008983 Chenopodium quinoa HOM05D005340 ORTHO05D006693 1.2e-48 196.8 121 71.1
MD15G1418600 Malus domestica HOM05D005340 ORTHO05D006693 1.2e-48 196.8 118 72.0
AT5G38460 Arabidopsis thaliana HOM05D005340 ORTHO05D006693 1.6e-48 196.4 120 70.8
EL10Ac2g04584 Beta vulgaris HOM05D005340 ORTHO05D006693 3.5e-48 195.3 111 75.7
CARHR291850 Cardamine hirsuta HOM05D005340 ORTHO05D006693 3.5e-48 195.3 123 69.9
Thhalv10027717m.g Eutrema salsugineum HOM05D005340 ORTHO05D006693 3.5e-48 195.3 127 66.9
Carub.0007s3744 Capsella rubella HOM05D005340 ORTHO05D006693 4.6e-48 194.9 120 70.8
C04p45110 Brassica napus HOM05D005340 ORTHO05D006693 6.0e-48 194.5 125 69.6
BolC4t26090H Brassica oleracea HOM05D005340 ORTHO05D006693 6.0e-48 194.5 125 69.6
MELO3C027204.2 Cucumis melo HOM05D005340 ORTHO05D006693 6.0e-48 194.5 125 69.6
CsaV3_3G020610 Cucumis sativus L. HOM05D005340 ORTHO05D006693 6.0e-48 194.5 133 69.2
HanXRQChr11g0325001 Helianthus annuus HOM05D005340 ORTHO05D006693 6.0e-48 194.5 134 66.4
RcHm_v2.0_Chr7g0224281 Rosa chinensis HOM05D005340 ORTHO05D006693 6.0e-48 194.5 111 74.8
SGA_v2.0_scaffold33G13479 Striga asiatica HOM05D005340 ORTHO05D006693 6.0e-48 194.5 139 64.0
BcaC02g09648 Brassica carinata HOM05D005340 ORTHO05D006693 7.8e-48 194.1 125 69.6
AL7G52120 Arabidopsis lyrata HOM05D005340 ORTHO05D006693 1.0e-47 193.7 120 70.8
DCAR_025917 Daucus carota HOM05D005340 ORTHO05D006693 1.0e-47 193.7 108 76.9
A04p11420 Brassica napus HOM05D005340 ORTHO05D006693 1.3e-47 193.4 125 70.4
Haze_01628 Corylus avellana HOM05D005340 ORTHO05D006693 1.3e-47 193.4 134 67.9
PGR142G3832 Punica granatum HOM05D005340 ORTHO05D006693 1.3e-47 193.4 137 65.7
Cfa015491 Carpinus fangiana HOM05D005340 ORTHO05D006693 1.7e-47 193.0 111 73.9
Phvul.002G243400 Phaseolus vulgaris HOM05D005340 ORTHO05D006693 1.7e-47 193.0 112 76.8
BraA04t16805Z Brassica rapa HOM05D005340 ORTHO05D006693 3.0e-47 192.2 114 73.7
TWI74G0404 Tripterygium wilfordii HOM05D005340 ORTHO05D006693 3.0e-47 192.2 134 64.2
ClCG05G011750 Citrullus lanatus HOM05D005340 ORTHO05D006693 6.6e-47 191.0 133 67.7
Aa31LG9G17070 Aethionema arabicum HOM05D005340 ORTHO05D006693 8.6e-47 190.7 127 64.6
Sp7g03590 Schrenkiella parvula HOM05D005340 ORTHO05D006693 1.1e-46 190.3 120 69.2
Sabra04G0079500 Salix brachista HOM05D005340 ORTHO05D006693 1.5e-46 189.9 137 60.6
CANSAT54G1996 Cannabis sativa HOM05D005340 ORTHO05D006693 1.9e-46 189.5 111 73.0
Sed0021828 Sechium edule HOM05D005340 ORTHO05D006693 2.5e-46 189.1 134 64.2
Phvul.004G064500 Phaseolus vulgaris HOM05D005340 ORTHO05D006693 3.3e-46 188.7 129 65.9
Potri.017G114100 Populus trichocarpa HOM05D005340 ORTHO05D006693 3.3e-46 188.7 138 63.0
Potri.004G100500 Populus trichocarpa HOM05D005340 ORTHO05D006693 5.6e-46 188.0 137 60.6
BcaB06g27224 Brassica carinata HOM05D005340 ORTHO05D006693 9.5e-46 187.2 125 68.0
Eucgr.F02485 Eucalyptus grandis HOM05D005340 ORTHO05D006693 9.5e-46 187.2 141 61.0
TPR.G32458 Trifolium pratense HOM05D005340 ORTHO05D006693 1.2e-45 186.8 114 70.2
Aqoxy5G01062 Aquilegia oxysepala HOM05D005340 ORTHO05D006693 3.6e-45 185.3 139 61.9
Medtr6g017315 Medicago truncatula HOM05D005340 ORTHO05D006693 1.1e-44 183.7 138 60.9
Psat1g075120 Pisum sativum HOM05D005340 ORTHO05D006693 1.1e-44 183.7 130 63.8
Dinv34831 Davidia involucrata HOM05D005340 ORTHO05D006693 4.0e-44 181.8 97 82.5
arahy.Tifrunner.gnm1.ann1.2X25WT Arachis hypogaea HOM05D005340 ORTHO05D006693 2.0e-43 179.5 102 75.5
arahy.Tifrunner.gnm1.ann1.HD0QD7 Arachis hypogaea HOM05D005340 ORTHO05D006693 2.0e-43 179.5 102 75.5
PSO675G0345 Papaver somniferum HOM05D005340 ORTHO05D006693 7.5e-43 177.6 128 64.1
PSO782G4549 Papaver somniferum HOM05D005340 ORTHO05D006693 1.3e-42 176.8 126 65.9
SHI22415 Sapria himalayana HOM05D005340 ORTHO05D006693 2.9e-42 175.6 107 72.0
PSO541G3461 Papaver somniferum HOM05D005340 ORTHO05D006693 6.4e-42 174.5 128 63.3
CDE11G0559 Ceratophyllum demersum HOM05D005340 ORTHO05D006693 1.4e-41 173.3 101 74.3
arahy.Tifrunner.gnm1.ann1.MY1EZ0 Arachis hypogaea HOM05D005340 ORTHO05D006693 3.2e-41 172.2 116 67.2
Nn8g41264 Nelumbo nucifera HOM05D005340 ORTHO05D006693 2.7e-40 169.1 105 72.4
Cpa.g.sc179.1 Carica papaya HOM05D005340 ORTHO05D006693 6.0e-40 167.9 98 76.5
Ah.16g101850 Amaranthus hybridus HOM05D005340 ORTHO05D006693 7.8e-40 167.5 90 77.8
ATR0618G222 Amborella trichopoda HOM05D005340 ORTHO05D006693 2.5e-38 162.5 131 59.5
AagrBONN_evm.TU.Sc2ySwM_117.1419 Anthoceros agrestis HOM05D005340 ORTHO05D006693 2.5e-38 162.5 137 55.5
SEGI_23556 Sequoiadendron giganteum HOM05D005340 ORTHO05D006693 9.5e-38 160.6 118 62.7
CBR_g31513 Chara braunii HOM05D005340 ORTHO05D006693 1.6e-37 159.8 105 65.7
SMO196G0061 Selaginella moellendorffii HOM05D005340 ORTHO05D006693 3.7e-34 148.7 78 80.8
Mapoly0037s0055 Marchantia polymorpha HOM05D005340 ORTHO05D006693 4.9e-34 148.3 93 66.7
Pp3c19_22340 Physcomitrium patens HOM05D005340 ORTHO05D006693 6.4e-34 147.9 130 54.6
HPP92_001348 Vanilla planifolia HOM05D005340 ORTHO05D006693 5.4e-33 144.8 97 66.0
unitig_21.g20962 Utricularia gibba HOM05D005340 ORTHO05D006693 2.7e-32 142.5 74 79.7
HPP92_001453 Vanilla planifolia HOM05D005340 ORTHO05D006693 2.7e-32 142.5 97 64.9
Os07g0164500 Oryza sativa ssp. japonica HOM05D005340 ORTHO05D006693 8.6e-31 137.5 128 51.6
MCO06G120 Micromonas commoda HOM05D005340 ORTHO05D006693 1.9e-30 136.3 92 62.0
Zm00001eb015730 Zea mays HOM05D005340 ORTHO05D006693 2.5e-30 136.0 98 60.2
Cre16.g690150 Chlamydomonas reinhardtii HOM05D005340 ORTHO05D006693 1.6e-29 133.3 114 53.5
Haze_26463 Corylus avellana HOM05D005340 ORTHO05D006693 2.4e-25 119.4 104 55.8
PRCOL_00002185 Prasinoderma coloniale HOM05D005340 ORTHO05D006693 5.4e-25 118.2 99 55.6
Thhalv10017711m.g Eutrema salsugineum HOM05D005340 ORTHO05D006693 4.6e-24 115.2 122 47.5
CDE05G1155 Ceratophyllum demersum HOM05D005340 ORTHO05D006693 5.1e-23 111.7 71 73.2
HPP92_001370 Vanilla planifolia HOM05D005340 ORTHO05D006693 5.6e-22 108.2 66 71.2
Cfa024122 Carpinus fangiana HOM05D005340 ORTHO05D006693 3.4e-19 99.0 113 45.1
Sed0017267 Sechium edule HOM05D005340 ORTHO05D006693 5.6e-14 81.6 98 46.9
arahy.Tifrunner.gnm1.ann1.9GA3KJ Arachis hypogaea HOM05D005340 ORTHO05D006693 9.6e-14 80.9 50 70.0
CSS0043838 Camellia sinensis var. sinensis HOM05D005340 ORTHO05D006693 2.1e-13 79.7 55 63.6
Manes.05G057700 Manihot esculenta HOM05D005587 ORTHO05D007287 4.2e-09 65.5 69 40.6
Pp3c14_19880 Physcomitrium patens HOM05D005587 ORTHO05D007287 5.5e-09 65.1 67 41.8
FvH4_7g08900 Fragaria vesca HOM05D005587 ORTHO05D007287 7.1e-09 64.7 69 42.0
FAN06G5081 Fragaria x ananassa HOM05D005587 ORTHO05D007287 7.1e-09 64.7 69 42.0
FAN03G1924 Fragaria x ananassa HOM05D005587 ORTHO05D007287 9.3e-09 64.3 69 42.0
Mapoly0011s0009 Marchantia polymorpha HOM05D005587 ORTHO05D007287 9.3e-09 64.3 69 43.5
FAN10G3974 Fragaria x ananassa HOM05D005587 ORTHO05D007287 1.2e-08 63.9 69 42.0
FAN10G2519 Fragaria x ananassa HOM05D005587 ORTHO05D007287 2.1e-08 63.2 69 42.0
MD02G1223000 Malus domestica HOM05D005587 ORTHO05D007287 3.5e-08 62.4 72 40.3
CANSAT25G2964 Cannabis sativa HOM05D005587 ORTHO05D007287 6.0e-08 61.6 69 40.6
TWI59G0612 Tripterygium wilfordii HOM05D005587 ORTHO05D007287 6.0e-08 61.6 69 42.0
Cfa003258 Carpinus fangiana HOM05D001267 ORTHO05D001323 7.9e-08 61.2 86 37.2
Prupe.2G118200 Prunus persica HOM05D005587 ORTHO05D007287 7.9e-08 61.2 72 40.3
RcHm_v2.0_Chr1g0344321 Rosa chinensis HOM05D005587 ORTHO05D007287 7.9e-08 61.2 69 40.6
PSO782G3200 Papaver somniferum HOM05D005587 ORTHO05D007287 1.0e-07 60.8 69 40.6
Aqoxy5G01488 Aquilegia oxysepala HOM05D005587 ORTHO05D007287 1.3e-07 60.5 67 38.8
FAN01G1806 Fragaria x ananassa HOM05D005587 ORTHO05D007287 1.3e-07 60.5 69 40.6
PSO063G5522 Papaver somniferum HOM05D005587 ORTHO05D007287 1.3e-07 60.5 69 39.1
Ciclev10014906m.g Citrus clementina HOM05D005587 ORTHO05D007287 1.8e-07 60.1 69 37.7
Gohir.A02G117800 Gossypium hirsutum HOM05D005587 ORTHO05D007287 1.8e-07 60.1 69 39.1
Gohir.D03G058500 Gossypium hirsutum HOM05D005587 ORTHO05D007287 1.8e-07 60.1 69 39.1
Gorai.003G062300 Gossypium raimondii HOM05D005587 ORTHO05D007287 1.8e-07 60.1 69 39.1
Sp4g26740 Schrenkiella parvula HOM05D005587 ORTHO05D007287 1.8e-07 60.1 69 37.7
CsaV3_6G006720 Cucumis sativus L. HOM05D005587 ORTHO05D007287 3.0e-07 59.3 69 37.7
Duzib168G0929 Durio zibethinus HOM05D005587 ORTHO05D007287 3.0e-07 59.3 69 39.1
Lj9A550G69 Lonicera japonica HOM05D005587 ORTHO05D007287 3.0e-07 59.3 61 41.0
QL04p026316 Quercus lobata HOM05D005587 ORTHO05D007287 3.0e-07 59.3 69 39.1
CSS0020453 Camellia sinensis var. sinensis HOM05D005587 ORTHO05D007287 3.9e-07 58.9 69 40.6
CSS0020891 Camellia sinensis var. sinensis HOM05D005587 ORTHO05D007287 3.9e-07 58.9 69 40.6
COL.COLO4_23407 Corchorus olitorius HOM05D005587 ORTHO05D007287 3.9e-07 58.9 68 39.7
Haze_02898 Corylus avellana HOM05D005587 ORTHO05D007287 3.9e-07 58.9 69 37.7
Prupe.2G117600 Prunus persica HOM05D005587 ORTHO05D007287 3.9e-07 58.9 128 32.0
THA.LOC104817180 Tarenaya hassleriana HOM05D005587 ORTHO05D007287 3.9e-07 58.9 69 37.7
MELO3C022453.2 Cucumis melo HOM05D005587 ORTHO05D007287 5.1e-07 58.5 69 37.7
Thecc.09G197000 Theobroma cacao HOM05D005587 ORTHO05D007287 5.1e-07 58.5 69 39.1
Atru.chr4.1483 Acer truncatum HOM05D005587 ORTHO05D007287 6.7e-07 58.2 69 36.2
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 6.7e-07 58.2 69 36.2
Cfa011027 Carpinus fangiana HOM05D005587 ORTHO05D007287 6.7e-07 58.2 69 37.7
Nn1g00683 Nelumbo nucifera HOM05D005587 ORTHO05D007287 8.7e-07 57.8 69 36.2
Sed0021182 Sechium edule HOM05D005587 ORTHO05D007287 8.7e-07 57.8 69 37.7
TAR375G0462 Trochodendron aralioides HOM05D005587 ORTHO05D007287 8.7e-07 57.8 69 36.2
Eucgr.E01703 Eucalyptus grandis HOM05D005587 ORTHO05D007287 1.1e-06 57.4 85 36.5
Hma1.2p1_0173F.1_g076460 Hydrangea macrophylla HOM05D005587 ORTHO05D007287 1.1e-06 57.4 69 36.2
Hma1.2p1_0173F.1_g076470 Hydrangea macrophylla HOM05D005587 ORTHO05D007287 1.1e-06 57.4 69 36.2
SMO228G0062 Selaginella moellendorffii HOM05D005587 ORTHO05D007287 1.9e-06 56.6 69 37.7
HPP92_001519 Vanilla planifolia HOM05D005587 ORTHO05D007287 1.9e-06 56.6 69 36.2
AUR62023371 Chenopodium quinoa HOM05D005587 ORTHO05D007287 2.5e-06 56.2 69 37.7
ClCG06G000880 Citrullus lanatus HOM05D005587 ORTHO05D007287 2.5e-06 56.2 69 37.7
PGR004G1682 Punica granatum HOM05D005587 ORTHO05D007287 2.5e-06 56.2 67 37.3
Aa31LG1G26200 Aethionema arabicum HOM05D005587 ORTHO05D007287 3.3e-06 55.8 67 38.8
AagrBONN_evm.TU.Sc2ySwM_362.1445 Anthoceros agrestis HOM05D005587 ORTHO05D007287 3.3e-06 55.8 67 37.3
Migut.N01719 Erythranthe guttata HOM05D005587 ORTHO05D007287 3.3e-06 55.8 69 34.8
ATR1098G018 Amborella trichopoda HOM05D005587 ORTHO05D007287 5.6e-06 55.1 69 37.7
SGA_v2.0_scaffold95G28723 Striga asiatica HOM05D005587 ORTHO05D007287 7.4e-06 54.7 69 34.8


User provided reference genes

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