Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 0.0e+00 4285.7 2404 100.0
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 0.0e+00 4148.6 2403 96.3
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 3543.4 2313 83.5
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 0.0e+00 3462.9 2162 87.7
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 3246.1 2330 77.9
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 0.0e+00 3224.5 2297 77.5
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 0.0e+00 2604.7 2192 64.7
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2566.6 1888 70.7
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2559.6 2159 64.5
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 0.0e+00 2513.8 2223 61.5
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 0.0e+00 2509.6 2069 65.2
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 0.0e+00 2478.7 2258 60.1
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 0.0e+00 2469.9 2002 64.9
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 0.0e+00 2464.9 2064 63.4
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 0.0e+00 2452.9 2034 64.3
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 0.0e+00 2434.1 2010 64.3
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 0.0e+00 2426.4 2079 62.5
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 0.0e+00 2424.8 2055 63.1
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2419.0 2080 62.3
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 0.0e+00 2412.1 2295 58.4
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 0.0e+00 2410.6 2242 59.1
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2410.6 2079 62.6
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2409.8 2293 58.4
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 0.0e+00 2406.3 2253 59.1
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2404.4 2246 59.2
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2398.6 2001 63.3
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 0.0e+00 2398.2 2264 58.7
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 0.0e+00 2371.7 2027 62.6
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 0.0e+00 2359.7 2050 62.3
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 0.0e+00 2355.5 2035 62.0
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 0.0e+00 2350.5 2047 62.7
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 0.0e+00 2348.2 2221 59.0
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 0.0e+00 2346.6 2114 60.5
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 0.0e+00 2342.8 2037 61.2
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 0.0e+00 2342.4 2423 55.3
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 0.0e+00 2318.9 2134 59.2
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 0.0e+00 2313.9 2155 58.6
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 0.0e+00 2312.7 2563 53.5
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 0.0e+00 2312.3 1963 63.5
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2311.6 1997 61.4
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2311.2 2157 59.6
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 0.0e+00 2289.2 2082 59.5
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 2288.1 2050 60.0
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 0.0e+00 2283.8 2075 60.0
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2278.4 2175 59.2
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 2278.4 1633 72.3
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 0.0e+00 2277.7 2088 58.9
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 0.0e+00 2275.0 2077 59.4
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2258.8 2067 59.6
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 0.0e+00 2256.9 2069 59.0
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 0.0e+00 2255.3 2067 59.2
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2239.2 2255 54.8
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 2237.2 2094 58.3
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2199.9 2055 58.2
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 0.0e+00 2197.2 2094 57.9
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2193.3 2031 58.6
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2193.3 2031 58.6
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2185.2 2195 56.4
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 0.0e+00 2167.1 2103 58.3
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 0.0e+00 2159.4 2098 56.9
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 0.0e+00 2148.2 2101 57.4
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 0.0e+00 2147.1 2069 58.0
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 2140.5 2083 57.0
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 0.0e+00 2140.2 2071 57.8
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 0.0e+00 2136.3 2082 56.8
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 0.0e+00 2129.8 2098 56.7
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 2124.0 2198 54.3
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 0.0e+00 2121.3 2199 54.4
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 0.0e+00 2114.0 2001 58.0
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2112.0 2050 56.2
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 0.0e+00 2041.2 2061 55.0
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 0.0e+00 2021.1 1453 72.3
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 0.0e+00 1843.6 3047 40.3
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 0.0e+00 1783.1 1680 58.4
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 0.0e+00 1773.4 2071 50.2
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 0.0e+00 1758.4 2096 49.0
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 1637.1 1128 74.8
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 0.0e+00 1580.1 2034 46.3
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 0.0e+00 1576.2 1699 53.4
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 0.0e+00 1560.8 1718 51.7
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 0.0e+00 1512.3 1527 54.9
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 0.0e+00 1495.3 1989 44.1
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 0.0e+00 1439.9 2106 43.5
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 0.0e+00 1304.7 1348 52.7
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 0.0e+00 1258.0 2048 40.2
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 0.0e+00 1234.6 1979 40.5
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 0.0e+00 1157.5 1505 43.7
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 0.0e+00 1155.6 919 65.0
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 0.0e+00 1144.8 1557 44.3
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 1111.7 2029 37.0
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 2.5e-310 1070.1 1031 55.8
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 1.9e-305 1053.9 1332 48.0
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 4.2e-281 973.0 849 61.8
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 2.5e-273 947.2 796 61.2
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 8.2e-261 905.6 991 52.0
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 1.0e-242 845.5 1263 43.8
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 9.4e-225 785.8 725 58.9
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 1.9e-217 761.5 910 48.4
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 6.8e-215 753.1 817 52.8
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 9.5e-209 732.6 1078 43.4
CSS0018407 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 3.0e-194 684.5 441 78.7
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 6.2e-192 676.8 578 61.1
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 2.0e-182 645.2 901 44.6
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 2.8e-176 624.8 766 47.8
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 2.4e-175 621.7 475 68.0
Lj2C445T15 Lonicera japonica HOM05D003845 ORTHO05D004161 2.0e-166 592.0 435 71.3
Ciclev10011943m.g Citrus clementina HOM05D003845 ORTHO05D004161 9.6e-161 573.2 386 74.6
ClCG11G005430 Citrullus lanatus HOM05D003845 ORTHO05D004161 4.6e-155 554.3 374 74.9
SEGI_40473 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 8.2e-136 490.3 403 62.5
PGSC0003DMG400012673 Solanum tuberosum HOM05D003845 ORTHO05D004161 5.0e-133 481.1 444 86.7
Rhsim09G0080700 Rhododendron simsii HOM05D003845 ORTHO05D004161 3.2e-108 398.7 361 60.9
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 2.1e-107 396.0 813 34.9
ATR0564G289 Amborella trichopoda HOM05D003845 ORTHO05D004161 1.0e-106 393.7 288 70.1
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 4.9e-96 358.2 774 32.9
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 1.0e-93 350.5 1505 27.0
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 7.5e-89 334.3 293 58.4
RcHm_v2.0_Chr2g0163391 Rosa chinensis HOM05D003845 ORTHO05D004161 1.3e-85 323.6 286 61.9
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 6.2e-83 314.7 264 64.0
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 3.5e-78 298.9 1784 23.2
Glyma.08G364200 Glycine max HOM05D003845 ORTHO05D004161 6.0e-78 298.1 468 38.7
CAN.G625.3 Capsicum annuum HOM05D003845 ORTHO05D004161 1.1e-74 287.3 160 93.1
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 1.7e-72 280.0 314 50.6
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 1.8e-66 260.0 423 41.1
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 3.4e-65 255.8 317 51.1
CSS0040864 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.7e-56 226.9 148 78.4
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 7.4e-52 211.5 157 65.6
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 4.9e-48 198.7 171 65.5
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 4.9e-48 198.7 171 65.5
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 4.9e-48 198.7 171 65.5
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 4.9e-48 198.7 171 65.5
QL02p051676 Quercus lobata HOM05D003845 ORTHO05D004161 8.4e-48 198.0 125 82.4
Actinidia15875 Actinidia chinensis HOM05D003845 ORTHO05D004161 4.3e-44 185.7 119 81.5
CiPaw.04G041000 Carya illinoinensis HOM05D003845 ORTHO05D004161 4.5e-41 175.6 276 39.9
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 3.2e-39 169.5 152 59.9
Cpa.g.sc179.6 Carica papaya HOM05D003845 ORTHO05D004161 7.9e-38 164.9 147 59.9
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 1.3e-35 157.5 120 72.5
Actinidia15877 Actinidia chinensis HOM05D003845 ORTHO05D004161 2.1e-30 140.2 194 42.3
CDE02G2490 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 3.0e-29 136.3 277 35.0
CAN.G178.11 Capsicum annuum HOM05D007284 ORTHO05D009303 3.9e-29 136.0 78 92.3
Lj6g0007936 Lotus japonicus HOM05D003845 ORTHO05D004161 3.9e-29 136.0 369 29.5
Lsat_1_v5_gn_8_163720 Lactuca sativa HOM05D003845 ORTHO05D004161 3.1e-26 126.3 116 61.2
Cfa024622 Carpinus fangiana HOM05D003845 ORTHO05D004161 4.6e-22 112.5 718 22.7
Dinv33934 Davidia involucrata HOM05D003845 ORTHO05D004161 1.4e-21 110.9 274 39.4
MCO14G535 Micromonas commoda HOM05D003845 ORTHO05D004161 3.0e-21 109.8 491 26.1
Manes.07G074028 Manihot esculenta HOM05D003845 ORTHO05D004161 6.7e-21 108.6 107 57.9
Cpa.g.c36099 Carica papaya HOM05D003845 ORTHO05D004161 3.7e-19 102.8 75 66.7
CSS0031203 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 4.8e-19 102.4 69 78.3
Cpa.g.sc3785.2 Carica papaya HOM05D003845 ORTHO05D004161 6.9e-18 98.6 75 68.0
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 2.6e-17 96.7 61 70.5
Gorai.001G080600 Gossypium raimondii HOM05D003845 ORTHO05D004161 5.9e-17 95.5 122 45.9
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 9.4e-15 88.2 60 65.0
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 9.4e-15 88.2 54 74.1
Actinidia17345 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.6e-14 87.4 54 79.6
Actinidia17348 Actinidia chinensis HOM05D003226 ORTHO05D015784 1.6e-14 87.4 54 79.6
COL.COLO4_16180 Corchorus olitorius HOM05D003845 ORTHO05D004161 2.1e-14 87.0 53 81.1
Cpa.g.sc179.7 Carica papaya HOM05D003845 ORTHO05D004161 4.7e-14 85.9 57 80.7
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 2.3e-13 83.6 55 65.5
EL10Ac8g19727 Beta vulgaris HOM05D003845 ORTHO05D004161 6.7e-13 82.0 54 77.8
Pp3c9_4980 Physcomitrium patens HOM05D003845 ORTHO05D004161 2.0e-12 80.5 115 40.0
RcHm_v2.0_Chr2g0123031 Rosa chinensis HOM05D003845 ORTHO05D004161 3.3e-12 79.7 70 64.3
arahy.Tifrunner.gnm1.ann1.57NG5G Arachis hypogaea HOM05D003845 ORTHO05D004161 5.7e-12 79.0 72 61.1
TPR.G40067 Trifolium pratense HOM05D003845 ORTHO05D004161 5.7e-12 79.0 51 78.4
Actinidia20836 Actinidia chinensis HOM05D004442 ORTHO05D002066 2.8e-11 76.6 66 66.7
arahy.Tifrunner.gnm1.ann1.395ZIT Arachis hypogaea HOM05D003845 ORTHO05D004161 2.8e-11 76.6 58 65.5
Hund04285 Selenicereus undatus HOM05D003845 ORTHO05D004161 4.8e-11 75.9 92 51.1
Actinidia20850 Actinidia chinensis HOM05D003845 ORTHO05D004161 2.4e-10 73.6 100 51.0
CSS0006962 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.0e-09 70.5 42 76.2
EL10Ac9g21747 Beta vulgaris HOM05D000802 ORTHO05D001074 1.0e-08 68.2 57 68.4
Lsat_1_v5_gn_1_87981 Lactuca sativa HOM05D003845 ORTHO05D004161 2.9e-08 66.6 48 62.5
Os06g0505100 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 1.9e-07 63.9 208 29.3
Hund29189 Selenicereus undatus HOM05D008000 ORTHO05D000006 2.7e-06 60.1 77 48.1
Hund29191 Selenicereus undatus HOM05D008000 ORTHO05D000006 2.7e-06 60.1 77 48.1
arahy.Tifrunner.gnm1.ann1.MNN8Y6 Arachis hypogaea HOM05D003845 ORTHO05D004161 6.1e-06 58.9 63 52.4
ClCG11G005420 Citrullus lanatus HOM05D003845 ORTHO05D004161 6.1e-06 58.9 50 66.0


User provided reference genes

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