Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 0.0e+00 1312.4 660 100.0
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 0.0e+00 1279.6 660 97.3
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 2.3e-266 922.2 678 71.7
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 6.7e-266 920.6 677 70.9
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 2.2e-261 905.6 677 71.0
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 6.1e-251 870.9 677 66.8
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 3.1e-247 858.6 756 61.0
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 1.0e-245 853.6 672 67.6
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 1.1e-239 833.6 680 66.2
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 4.4e-225 785.0 671 61.7
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.2e-185 654.1 461 71.6
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 9.1e-154 548.1 691 46.2
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.0e-149 534.6 691 45.9
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 2.0e-145 520.4 698 45.7
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 2.7e-145 520.0 694 45.2
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 4.5e-145 519.2 698 45.6
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 2.9e-144 516.5 704 44.2
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 6.1e-142 508.8 692 45.2
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 6.1e-142 508.8 692 43.4
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 1.8e-141 507.3 690 44.2
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 1.0e-136 491.5 703 41.3
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 6.5e-136 488.8 719 40.6
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 3.0e-133 479.9 698 42.6
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 9.8e-132 474.9 345 68.7
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 1.6e-129 467.6 686 42.6
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 2.7e-129 466.8 697 40.6
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 7.8e-129 465.3 658 40.9
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 1.9e-127 460.7 683 40.8
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 5.6e-127 459.1 686 40.1
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 1.2e-126 458.0 692 40.6
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 3.0e-125 453.4 685 40.0
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 8.3e-123 445.3 706 39.2
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 8.3e-123 445.3 701 40.1
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 2.7e-121 440.3 699 38.9
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 6.6e-120 435.6 714 39.1
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 1.5e-119 434.5 718 38.0
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 1.9e-119 434.1 563 45.3
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 3.3e-119 433.3 715 38.2
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 4.0e-117 426.4 707 39.3
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 5.2e-117 426.0 712 41.0
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 8.9e-117 425.2 721 37.7
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 3.4e-116 423.3 707 38.3
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 1.7e-115 421.0 696 38.4
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 2.2e-115 420.6 673 40.0
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 2.9e-115 420.2 711 38.1
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 8.3e-115 418.7 716 38.0
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 2.4e-114 417.2 716 38.0
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.0e-112 410.2 716 37.8
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 7.3e-111 405.6 688 38.1
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 1.6e-110 404.4 709 37.4
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 4.7e-110 402.9 675 38.7
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 4.7e-110 402.9 202 96.0
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.1e-109 401.7 701 38.1
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 1.8e-109 401.0 715 37.3
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.1e-109 400.2 702 37.5
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.0e-109 399.8 723 36.9
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 1.2e-108 398.3 569 40.8
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 1.5e-108 397.9 694 38.2
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 2.0e-108 397.5 721 38.1
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 2.6e-108 397.1 705 35.9
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 9.9e-108 395.2 699 36.8
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.7e-107 394.4 701 36.9
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 2.9e-107 393.7 713 36.3
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 4.9e-107 392.9 669 36.0
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 1.1e-106 391.7 682 36.4
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 1.4e-106 391.3 714 36.8
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 3.2e-106 390.2 700 37.0
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.6e-105 387.9 652 38.7
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 3.5e-105 386.7 701 36.4
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.3e-104 384.0 722 36.6
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 8.6e-104 382.1 549 43.2
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 2.5e-103 380.6 695 37.6
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.7e-102 376.3 711 36.0
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.8e-101 374.4 626 37.9
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 1.3e-99 368.2 601 36.8
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 2.4e-98 364.0 698 37.1
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 3.0e-96 357.1 705 35.5
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 6.6e-96 355.9 652 36.7
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 8.7e-96 355.5 710 35.2
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 1.1e-95 355.1 708 35.5
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 1.1e-95 355.1 710 35.2
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 1.5e-95 354.8 714 35.3
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 4.3e-95 353.2 579 37.3
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 2.8e-94 350.5 629 36.1
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 1.4e-93 348.2 706 35.4
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 1.8e-93 347.8 591 38.4
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 1.8e-93 347.8 632 36.1
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 1.8e-93 347.8 592 37.8
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 2.4e-93 347.4 701 34.1
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 7.6e-92 342.4 684 36.0
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 9.9e-92 342.0 699 34.6
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 4.9e-91 339.7 711 34.0
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 2.7e-89 334.0 711 33.9
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 3.5e-89 333.6 701 34.4
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 5.1e-88 329.7 626 35.1
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 4.0e-85 320.1 629 35.8
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 2.1e-81 307.8 555 36.8
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 3.7e-78 297.0 671 33.4
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 7.1e-74 282.7 589 34.0
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 2.1e-73 281.2 473 40.0
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 3.7e-70 270.4 455 38.2
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 6.9e-69 266.2 498 35.7
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 8.4e-67 259.2 725 29.7
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 1.2e-65 255.4 716 31.6
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 1.0e-64 252.3 654 31.7
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 1.3e-64 251.9 626 31.3
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 6.7e-64 249.6 473 33.8
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 1.1e-63 248.8 688 30.8
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 3.3e-63 247.3 754 28.2
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 5.7e-63 246.5 509 33.2
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 3.7e-62 243.8 467 37.5
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 3.4e-60 237.3 507 33.7
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 4.5e-60 236.9 368 38.9
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.8e-59 233.8 677 30.4
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 7.2e-58 229.6 663 28.1
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 9.4e-58 229.2 348 36.2
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.2e-57 228.8 415 37.6
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 3.6e-57 227.3 550 31.8
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 3.9e-56 223.8 709 28.1
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 3.9e-56 223.8 709 28.1
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 4.8e-54 216.9 468 32.9
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 9.4e-50 202.6 479 33.0
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.0e-44 184.9 434 31.3
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.7e-30 138.7 370 27.3
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 2.8e-30 137.9 245 38.0
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 1.4e-29 135.6 231 35.9
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 2.4e-29 134.8 212 37.3
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 3.1e-29 134.4 364 31.6
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 4.1e-29 134.0 220 40.0
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.6e-28 132.1 217 35.5
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.0e-28 131.7 271 33.6
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 5.0e-27 127.1 198 41.9
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 6.5e-27 126.7 232 37.9
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.1e-26 125.9 219 37.4
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 1.1e-26 125.9 223 34.1
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 1.0e-24 119.4 318 31.8
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 5.2e-24 117.1 449 27.2
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 3.4e-23 114.4 125 46.4
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 3.4e-23 114.4 419 25.1
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 7.5e-23 113.2 208 32.7
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 2.4e-21 108.2 231 32.0
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 4.1e-21 107.5 192 39.1
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 1.6e-20 105.5 341 27.6
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 6.6e-19 100.1 332 27.4
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.3e-16 91.7 102 46.1
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 8.3e-14 83.2 196 31.1
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 2.0e-12 78.6 85 47.1
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 7.8e-12 76.6 80 45.0
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 7.8e-12 76.6 90 38.9
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 3.9e-11 74.3 225 27.6
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 5.0e-11 73.9 82 45.1
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 1.5e-10 72.4 126 36.5
HPP92_015986 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.8e-09 68.2 81 45.7
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 3.6e-09 67.8 95 42.1
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 8.0e-09 66.6 48 52.1
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 8.0e-09 66.6 566 22.4
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 1.0e-08 66.2 113 37.2
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.0e-07 62.0 89 41.6
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 3.4e-07 61.2 92 39.1
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 5.8e-07 60.5 139 32.4
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 3.7e-06 57.8 131 30.5
QL06p009809 Quercus lobata HOM05D004086 ORTHO05D004641 6.4e-06 57.0 81 45.7


User provided reference genes

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