Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 1.1e-59 233.0 111 100.0
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 1.1e-59 233.0 111 100.0
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 5.4e-59 230.7 111 99.1
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.1e-54 216.5 111 90.1
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 1.4e-54 216.1 110 90.0
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.8e-54 215.7 110 91.8
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 5.2e-54 214.2 110 90.9
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.9e-52 208.4 106 91.5
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 9.6e-48 193.4 107 85.0
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 1.2e-47 193.0 112 82.1
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 1.8e-46 189.1 88 97.7
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 6.4e-44 180.6 111 76.6
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 8.4e-44 180.3 112 73.2
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.9e-43 179.1 105 78.1
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 7.1e-43 177.2 105 76.2
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 7.1e-43 177.2 107 76.6
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 7.1e-43 177.2 107 76.6
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 9.3e-43 176.8 105 79.0
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 4.6e-42 174.5 107 76.6
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 1.0e-41 173.3 103 75.7
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 2.3e-41 172.2 112 71.4
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 3.0e-41 171.8 102 77.5
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 3.9e-41 171.4 101 78.2
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 3.9e-41 171.4 105 75.2
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 3.9e-41 171.4 105 75.2
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 3.9e-41 171.4 108 75.9
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 6.6e-41 170.6 109 71.6
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 6.6e-41 170.6 113 69.9
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 8.7e-41 170.2 109 72.5
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 8.7e-41 170.2 105 72.4
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 5.6e-40 167.5 109 68.8
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 1.3e-39 166.4 106 72.6
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 1.3e-39 166.4 109 67.9
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 1.6e-39 166.0 108 71.3
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 3.6e-39 164.9 111 69.4
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 3.6e-39 164.9 110 70.9
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 8.1e-39 163.7 111 67.6
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.1e-38 163.3 113 67.3
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 1.4e-38 162.9 102 72.5
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 1.8e-38 162.5 109 68.8
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 4.0e-38 161.4 113 69.0
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 5.3e-38 161.0 107 69.2
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 5.3e-38 161.0 106 68.9
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.5e-37 159.5 112 68.8
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 2.6e-37 158.7 100 74.0
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 4.5e-37 157.9 96 74.0
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 4.5e-37 157.9 113 69.0
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 7.6e-37 157.1 106 67.0
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 7.6e-37 157.1 118 66.1
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 7.6e-37 157.1 114 65.8
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 7.6e-37 157.1 107 71.0
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 9.9e-37 156.8 105 69.5
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 1.3e-36 156.4 94 75.5
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 1.7e-36 156.0 96 74.0
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 2.2e-36 155.6 109 63.3
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 2.2e-36 155.6 109 67.9
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 2.9e-36 155.2 103 68.9
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 4.9e-36 154.5 110 65.5
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 4.9e-36 154.5 100 73.0
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 6.4e-36 154.1 107 66.4
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 6.4e-36 154.1 107 66.4
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 6.4e-36 154.1 88 77.3
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 6.4e-36 154.1 105 68.6
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 8.4e-36 153.7 96 72.9
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 1.1e-35 153.3 96 72.9
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 1.1e-35 153.3 100 72.0
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.9e-35 152.5 104 69.2
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 1.9e-35 152.5 94 74.5
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 1.9e-35 152.5 107 65.4
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 2.4e-35 152.1 80 78.8
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.4e-35 152.1 96 71.9
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 2.4e-35 152.1 104 68.3
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 3.2e-35 151.8 90 75.6
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 3.2e-35 151.8 108 65.7
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 4.2e-35 151.4 105 67.6
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 4.2e-35 151.4 105 67.6
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 4.2e-35 151.4 94 74.5
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 4.2e-35 151.4 94 73.4
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 5.4e-35 151.0 97 73.2
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 7.1e-35 150.6 95 74.7
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 7.1e-35 150.6 105 66.7
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 9.3e-35 150.2 97 72.2
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 9.3e-35 150.2 105 66.7
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 9.3e-35 150.2 105 66.7
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.2e-34 149.8 109 64.2
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.2e-34 149.8 107 67.3
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.2e-34 149.8 96 70.8
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.6e-34 149.4 105 66.7
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 1.6e-34 149.4 105 66.7
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 1.6e-34 149.4 81 77.8
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 1.6e-34 149.4 94 74.5
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 1.6e-34 149.4 96 70.8
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.1e-34 149.1 97 71.1
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.1e-34 149.1 97 71.1
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 2.1e-34 149.1 109 68.8
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 2.7e-34 148.7 105 64.8
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 2.7e-34 148.7 105 64.8
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 2.7e-34 148.7 105 64.8
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 2.7e-34 148.7 105 64.8
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 2.7e-34 148.7 99 70.7
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 3.5e-34 148.3 95 68.4
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.5e-34 148.3 106 65.1
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.5e-34 148.3 106 65.1
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 6.0e-34 147.5 80 76.2
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 6.0e-34 147.5 99 69.7
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 7.9e-34 147.1 105 66.7
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 7.9e-34 147.1 105 65.7
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 7.9e-34 147.1 105 65.7
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 7.9e-34 147.1 105 65.7
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 7.9e-34 147.1 105 65.7
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 7.9e-34 147.1 95 69.5
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.3e-33 146.4 81 76.5
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 2.3e-33 145.6 105 63.8
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 2.3e-33 145.6 107 64.5
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 3.0e-33 145.2 110 63.6
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 5.1e-33 144.4 97 68.0
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 6.7e-33 144.1 108 63.9
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 6.7e-33 144.1 99 70.7
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 1.1e-32 143.3 96 69.8
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 1.1e-32 143.3 96 69.8
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 1.1e-32 143.3 96 68.8
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 1.1e-32 143.3 102 65.7
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 1.1e-32 143.3 98 68.4
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.1e-32 143.3 106 65.1
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 1.9e-32 142.5 105 62.9
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 1.9e-32 142.5 105 62.9
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 1.9e-32 142.5 96 68.8
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 1.9e-32 142.5 96 68.8
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 1.9e-32 142.5 96 68.8
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 4.3e-32 141.4 96 67.7
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 5.6e-32 141.0 96 68.8
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 5.6e-32 141.0 105 63.8
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 7.4e-32 140.6 99 69.7
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 9.6e-32 140.2 88 69.3
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 1.1e-30 136.7 75 77.3
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 5.3e-30 134.4 105 59.0
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 2.0e-29 132.5 90 67.8
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 2.6e-29 132.1 112 58.9
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 1.3e-28 129.8 113 56.6
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 6.4e-28 127.5 103 59.2
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 6.7e-25 117.5 81 65.4
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 1.3e-23 113.2 55 87.3
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 4.8e-23 111.3 108 51.9
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 6.9e-22 107.5 92 57.6
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 4.5e-21 104.8 57 80.7
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 2.2e-20 102.4 95 52.6
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 1.4e-19 99.8 108 52.8
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.4e-19 99.8 60 80.0
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 7.1e-19 97.4 100 50.0
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 3.9e-17 91.7 58 67.2
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 6.3e-15 84.3 71 53.5
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 9.0e-14 80.5 70 51.4
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 1.5e-13 79.7 95 46.3
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 1.0e-12 77.0 58 63.8
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 7.4e-08 60.8 42 69.0
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 3.7e-07 58.5 56 46.4


User provided reference genes

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