Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 1.1e-60 236.5 122 100.0
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 1.2e-54 216.5 120 93.3
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 8.6e-50 200.3 116 92.2
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 3.7e-45 184.9 113 87.6
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 4.1e-44 181.4 121 81.0
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 7.8e-43 177.2 119 79.0
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 1.7e-42 176.0 121 77.7
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 7.3e-41 170.6 115 80.0
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 4.3e-33 144.8 121 69.4
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 8.1e-32 140.6 119 70.6
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 1.4e-31 139.8 121 69.4
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 3.1e-31 138.7 121 69.4
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 6.8e-31 137.5 121 66.9
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.7e-29 132.9 121 66.1
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 3.0e-26 122.1 122 60.7
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 5.1e-26 121.3 117 63.2
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 2.3e-18 95.9 115 47.8
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 3.9e-18 95.1 116 51.7
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 1.5e-17 93.2 114 50.0
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 3.3e-17 92.0 117 50.4
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 9.6e-17 90.5 117 48.7
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 3.6e-16 88.6 113 48.7
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 3.6e-16 88.6 121 43.8
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 1.4e-15 86.7 116 45.7
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 2.4e-15 85.9 112 49.1
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 1.5e-14 83.2 114 49.1
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 2.6e-14 82.4 121 42.1
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 4.5e-14 81.6 118 44.9
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 7.6e-14 80.9 116 45.7
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 9.9e-14 80.5 123 42.3
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 1.3e-13 80.1 117 44.4
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.7e-13 79.7 118 44.1
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 2.2e-13 79.3 113 46.0
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 2.9e-13 79.0 120 41.7
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 4.9e-13 78.2 112 43.8
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 8.4e-13 77.4 126 42.1
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 8.4e-13 77.4 112 46.4
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.4e-12 76.6 118 40.7
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.4e-12 76.6 112 46.4
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 1.4e-12 76.6 122 41.8
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 3.2e-12 75.5 126 41.3
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 3.2e-12 75.5 126 41.3
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 4.2e-12 75.1 116 43.1
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 4.2e-12 75.1 112 46.4
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 1.2e-11 73.6 122 43.4
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 1.2e-11 73.6 116 40.5
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 1.6e-11 73.2 124 40.3
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 2.1e-11 72.8 127 44.1
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 2.1e-11 72.8 112 40.2
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 3.5e-11 72.0 122 41.8
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 7.9e-11 70.9 120 40.0
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 7.9e-11 70.9 119 42.9
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 1.0e-10 70.5 110 36.4
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 2.3e-10 69.3 116 41.4
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 3.0e-10 68.9 120 36.7
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 3.0e-10 68.9 115 40.9
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 3.9e-10 68.6 121 37.2
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 3.9e-10 68.6 120 42.5
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 5.1e-10 68.2 115 44.3
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 6.7e-10 67.8 116 38.8
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 1.9e-09 66.2 120 40.0
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 1.9e-09 66.2 119 36.1
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 2.5e-09 65.9 116 40.5
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 2.5e-09 65.9 125 41.6
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 3.3e-09 65.5 115 39.1
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 5.6e-09 64.7 135 37.8
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 5.6e-09 64.7 115 36.5
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 5.6e-09 64.7 121 35.5
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 1.6e-08 63.2 120 36.7
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 2.1e-08 62.8 115 33.9
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 2.1e-08 62.8 115 33.9
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 2.8e-08 62.4 119 36.1
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 3.7e-08 62.0 121 35.5
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 3.7e-08 62.0 121 36.4
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 4.8e-08 61.6 115 32.2
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 4.8e-08 61.6 122 40.2
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 4.8e-08 61.6 118 43.2
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 6.2e-08 61.2 83 49.4
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 6.2e-08 61.2 122 40.2
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 6.2e-08 61.2 121 33.1
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 6.2e-08 61.2 122 35.2
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 8.1e-08 60.8 121 34.7
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 8.1e-08 60.8 119 35.3
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 1.1e-07 60.5 119 35.3
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 1.1e-07 60.5 121 32.2
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 1.1e-07 60.5 115 33.9
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 1.4e-07 60.1 114 36.0
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 1.4e-07 60.1 118 41.5
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 1.8e-07 59.7 124 34.7
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 1.8e-07 59.7 115 39.1
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 1.8e-07 59.7 115 33.0
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.4e-07 59.3 115 39.1
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.1e-07 58.9 115 39.1
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 4.0e-07 58.5 122 35.2
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 4.0e-07 58.5 115 38.3
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 5.3e-07 58.2 119 31.9
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 6.9e-07 57.8 115 32.2
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 6.9e-07 57.8 120 35.0
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 9.0e-07 57.4 124 35.5
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-06 57.0 121 36.4
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-06 57.0 115 37.4
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 1.2e-06 57.0 69 50.7
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 1.2e-06 57.0 122 32.8
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.5e-06 56.6 117 38.5
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 1.5e-06 56.6 115 37.4
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.5e-06 56.6 120 36.7
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 2.0e-06 56.2 115 38.3
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 2.0e-06 56.2 115 38.3
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 2.0e-06 56.2 115 38.3
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 2.0e-06 56.2 111 33.3
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 2.6e-06 55.8 120 36.7
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 2.6e-06 55.8 120 36.7
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.6e-06 55.8 124 35.5
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 3.4e-06 55.5 124 34.7
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 4.5e-06 55.1 124 34.7
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 5.8e-06 54.7 115 37.4
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 5.8e-06 54.7 120 36.7
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 5.8e-06 54.7 120 36.7
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 5.8e-06 54.7 124 33.1
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 7.6e-06 54.3 121 33.9
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 7.6e-06 54.3 122 36.9
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 7.6e-06 54.3 122 36.9
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 7.6e-06 54.3 122 36.9
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 7.6e-06 54.3 122 36.9
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 7.6e-06 54.3 122 36.9
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.0e-05 53.9 124 35.5
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 1.0e-05 53.9 120 32.5
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 1.0e-05 53.9 111 34.2


User provided reference genes

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