Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 1.6e-61 239.2 120 100.0
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 1.2e-59 233.0 120 98.3
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.9e-54 215.7 122 92.6
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 1.1e-46 189.9 122 83.6
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.9e-41 172.6 119 78.2
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.4e-39 166.4 113 78.8
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 1.1e-38 163.3 121 73.6
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.6e-38 162.2 116 75.9
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 3.3e-38 161.8 117 74.4
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 3.2e-33 145.2 111 72.1
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 3.6e-32 141.7 114 71.9
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 8.0e-32 140.6 121 69.4
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.1e-30 136.7 111 73.0
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 5.7e-30 134.4 121 66.1
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 4.1e-28 128.3 116 62.9
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 7.0e-28 127.5 107 63.6
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 1.1e-20 103.6 109 55.0
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 2.7e-19 99.0 112 51.8
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 3.5e-19 98.6 109 51.4
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 6.5e-18 94.4 106 49.1
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 1.5e-17 93.2 104 48.1
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 4.2e-17 91.7 117 44.4
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 1.6e-16 89.7 116 47.4
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 2.1e-16 89.4 108 50.9
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 4.7e-16 88.2 118 50.8
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 8.0e-16 87.4 109 47.7
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 8.0e-16 87.4 109 47.7
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 1.8e-15 86.3 105 48.6
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 3.0e-15 85.5 111 46.8
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 8.8e-15 84.0 105 48.6
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 2.0e-14 82.8 111 45.9
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 2.0e-14 82.8 112 48.2
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 2.6e-14 82.4 113 47.8
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 3.4e-14 82.0 121 43.0
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 4.4e-14 81.6 130 40.0
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 5.7e-14 81.3 109 48.6
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 7.5e-14 80.9 120 45.8
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 7.5e-14 80.9 105 41.0
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 1.7e-13 79.7 118 42.4
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.7e-13 79.7 124 38.7
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.7e-13 79.7 120 42.5
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.7e-13 79.7 124 38.7
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.2e-13 79.3 118 42.4
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 2.8e-13 79.0 121 41.3
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 4.8e-13 78.2 103 47.6
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 6.3e-13 77.8 103 43.7
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 6.3e-13 77.8 112 42.0
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 4.1e-12 75.1 136 36.8
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 5.4e-12 74.7 112 39.3
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 1.6e-11 73.2 113 47.8
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 1.6e-11 73.2 107 38.3
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 3.5e-11 72.0 116 40.5
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 4.5e-11 71.6 107 39.3
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 7.7e-11 70.9 135 38.5
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 7.7e-11 70.9 108 40.7
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 1.0e-10 70.5 107 39.3
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 1.3e-10 70.1 119 43.7
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 1.3e-10 70.1 111 43.2
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 1.3e-10 70.1 107 41.1
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 1.7e-10 69.7 118 44.9
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 2.3e-10 69.3 117 41.0
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 2.3e-10 69.3 112 43.8
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 2.9e-10 68.9 119 40.3
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 6.6e-10 67.8 115 40.9
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 6.6e-10 67.8 112 37.5
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 8.6e-10 67.4 106 37.7
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 8.6e-10 67.4 122 34.4
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 1.5e-09 66.6 114 43.0
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 1.9e-09 66.2 113 38.9
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 1.9e-09 66.2 113 38.9
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 1.9e-09 66.2 113 38.9
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 1.9e-09 66.2 113 38.9
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 1.9e-09 66.2 113 38.9
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 1.9e-09 66.2 115 42.6
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 1.9e-09 66.2 114 37.7
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 2.5e-09 65.9 116 36.2
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.3e-09 65.5 121 39.7
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 4.2e-09 65.1 121 39.7
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 5.5e-09 64.7 107 38.3
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 5.5e-09 64.7 107 40.2
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 5.5e-09 64.7 120 35.8
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 7.2e-09 64.3 121 38.8
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 7.2e-09 64.3 114 41.2
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 7.2e-09 64.3 112 42.9
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 7.2e-09 64.3 111 34.2
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 7.2e-09 64.3 113 33.6
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 9.5e-09 63.9 117 33.3
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 9.5e-09 63.9 109 40.4
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.2e-08 63.5 122 37.7
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 1.2e-08 63.5 118 37.3
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.2e-08 63.5 122 36.1
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 1.2e-08 63.5 110 36.4
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 2.1e-08 62.8 112 38.4
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 2.1e-08 62.8 120 35.8
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 2.1e-08 62.8 121 38.0
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.8e-08 62.4 114 40.4
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.8e-08 62.4 116 38.8
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 2.8e-08 62.4 115 35.7
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 2.8e-08 62.4 111 36.0
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 3.6e-08 62.0 122 38.5
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 3.6e-08 62.0 122 38.5
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 3.6e-08 62.0 121 38.0
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 3.6e-08 62.0 104 38.5
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 3.6e-08 62.0 121 38.0
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 4.7e-08 61.6 116 38.8
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 4.7e-08 61.6 123 37.4
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 4.7e-08 61.6 123 37.4
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 4.7e-08 61.6 123 37.4
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.7e-08 61.6 117 39.3
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 4.7e-08 61.6 112 36.6
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 4.7e-08 61.6 104 36.5
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 6.1e-08 61.2 121 38.0
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 6.1e-08 61.2 121 38.0
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 6.1e-08 61.2 123 37.4
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 6.1e-08 61.2 112 37.5
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 6.1e-08 61.2 119 31.9
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 8.0e-08 60.8 111 36.9
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 8.0e-08 60.8 123 37.4
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 1.0e-07 60.5 102 35.3
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.0e-07 60.5 122 37.7
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.4e-07 60.1 124 39.5
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.4e-07 60.1 123 36.6
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 1.8e-07 59.7 115 40.9
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 1.8e-07 59.7 115 40.9
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 2.3e-07 59.3 122 39.3
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 2.3e-07 59.3 122 39.3
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 2.3e-07 59.3 115 33.9
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.0e-07 58.9 123 38.2
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 3.0e-07 58.9 111 36.9
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 3.0e-07 58.9 108 40.7
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 4.0e-07 58.5 122 35.2
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 4.0e-07 58.5 124 38.7
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 4.0e-07 58.5 43 62.8
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 5.2e-07 58.2 116 36.2
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 5.2e-07 58.2 114 36.8
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 5.2e-07 58.2 114 36.8
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 5.2e-07 58.2 124 37.9
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 5.2e-07 58.2 122 32.8
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 5.2e-07 58.2 114 36.0
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 6.8e-07 57.8 122 38.5
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 6.8e-07 57.8 113 34.5
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 6.8e-07 57.8 114 34.2
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 6.8e-07 57.8 113 35.4
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 6.8e-07 57.8 116 40.5
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 6.8e-07 57.8 122 37.7
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 6.8e-07 57.8 113 37.2
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 8.9e-07 57.4 80 45.0
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-06 57.0 122 38.5
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.2e-06 57.0 117 41.0
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 1.5e-06 56.6 111 36.9
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 1.5e-06 56.6 115 40.0
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 1.5e-06 56.6 111 36.9
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 1.5e-06 56.6 111 36.9
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 1.5e-06 56.6 115 35.7
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.5e-06 56.6 120 39.2
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 2.0e-06 56.2 115 40.0
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 2.0e-06 56.2 115 40.0
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 2.0e-06 56.2 115 40.0
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 2.6e-06 55.8 122 37.7
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 2.6e-06 55.8 103 32.0
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 3.4e-06 55.5 122 36.9
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 3.4e-06 55.5 123 35.0
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 5.7e-06 54.7 123 36.6
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 5.7e-06 54.7 119 38.7
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 5.7e-06 54.7 114 33.3
CDE11G0435 Ceratophyllum demersum HOM05D007001 ORTHO05D004300 7.5e-06 54.3 57 43.9


User provided reference genes

Program Settings