Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g084380.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 5.8e-72 274.2 151 100.0
Sopen02g029090 Solanum pennellii HOM05D005630 ORTHO05D006979 6.6e-68 260.8 151 96.0
PGSC0003DMG400023408 Solanum tuberosum HOM05D005630 ORTHO05D006979 1.3e-58 229.9 125 90.4
Nitab4.5_0000914g0010 Nicotiana tabacum HOM05D005630 ORTHO05D006979 2.1e-58 229.2 126 87.3
Nitab4.5_0002880g0080 Nicotiana tabacum HOM05D005630 ORTHO05D006979 8.1e-58 227.3 126 85.7
Sopen05g033450 Solanum pennellii HOM05D005630 ORTHO05D006979 2.4e-57 225.7 152 82.9
Solyc05g054990.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 3.1e-57 225.3 125 88.8
Nitab4.5_0003965g0050 Nicotiana tabacum HOM05D005630 ORTHO05D006979 4.0e-57 224.9 151 80.8
CSS0013521 Camellia sinensis var. sinensis HOM05D005630 ORTHO05D006979 6.9e-57 224.2 123 85.4
Nitab4.5_0005975g0020 Nicotiana tabacum HOM05D005630 ORTHO05D006979 9.0e-57 223.8 127 85.0
CAN.G1505.19 Capsicum annuum HOM05D005630 ORTHO05D006979 2.6e-56 222.2 151 82.1
Peaxi162Scf00083g01117 Petunia axillaris HOM05D005630 ORTHO05D006979 8.4e-55 217.2 126 81.7
CAN.G1465.11 Capsicum annuum HOM05D005630 ORTHO05D006979 1.9e-54 216.1 124 83.1
Oeu028785.1 Olea europaea HOM05D005630 ORTHO05D006979 2.4e-54 215.7 127 77.2
Hma1.2p1_1164F.1_g262820 Hydrangea macrophylla HOM05D005630 ORTHO05D006979 2.1e-53 212.6 126 78.6
Cc06_g16720 Coffea canephora HOM05D005630 ORTHO05D006979 1.3e-52 209.9 127 78.0
Lsat_1_v5_gn_5_90640 Lactuca sativa HOM05D005630 ORTHO05D006979 1.8e-52 209.5 125 78.4
Actinidia03956 Actinidia chinensis HOM05D005630 ORTHO05D006979 6.7e-52 207.6 124 79.8
Rhsim03G0057400 Rhododendron simsii HOM05D005630 ORTHO05D006979 8.7e-52 207.2 118 81.4
HanXRQChr10g0314501 Helianthus annuus HOM05D005630 ORTHO05D006979 1.1e-51 206.8 126 75.4
Nn8g40117 Nelumbo nucifera HOM05D005630 ORTHO05D006979 1.5e-51 206.5 119 81.5
QL02p091555 Quercus lobata HOM05D005630 ORTHO05D006979 5.6e-51 204.5 148 76.4
TAR383G0582 Trochodendron aralioides HOM05D005630 ORTHO05D006979 5.6e-51 204.5 128 75.8
Prupe.3G048400 Prunus persica HOM05D005630 ORTHO05D006979 7.4e-51 204.1 125 76.8
CiPaw.04G061600 Carya illinoinensis HOM05D005630 ORTHO05D006979 9.6e-51 203.8 128 75.0
MSTRG.19630 Avicennia marina HOM05D005630 ORTHO05D006979 1.6e-50 203.0 126 75.4
Cfa020874 Carpinus fangiana HOM05D005630 ORTHO05D006979 1.6e-50 203.0 119 80.7
CANSAT11G0524 Cannabis sativa HOM05D005630 ORTHO05D006979 8.1e-50 200.7 118 79.7
ClCG10G005100 Citrullus lanatus HOM05D005630 ORTHO05D006979 1.4e-49 199.9 118 78.8
Migut.J01281 Erythranthe guttata HOM05D005630 ORTHO05D006979 1.8e-49 199.5 124 75.0
Actinidia37787 Actinidia chinensis HOM05D005630 ORTHO05D006979 6.9e-49 197.6 118 78.0
TWI34G2008 Tripterygium wilfordii HOM05D005630 ORTHO05D006979 6.9e-49 197.6 128 71.9
Haze_19305 Corylus avellana HOM05D005630 ORTHO05D006979 1.2e-48 196.8 119 78.2
Prupe.7G253200 Prunus persica HOM05D005630 ORTHO05D006979 1.2e-48 196.8 125 73.6
MD02G1012200 Malus domestica HOM05D005630 ORTHO05D006979 1.5e-48 196.4 128 72.7
Sed0022514 Sechium edule HOM05D005630 ORTHO05D006979 1.5e-48 196.4 120 74.2
Sc08g0004950 Simmondsia chinensis HOM05D005630 ORTHO05D006979 1.5e-48 196.4 128 71.1
Atru.chr7.200 Acer truncatum HOM05D005630 ORTHO05D006979 2.0e-48 196.1 119 77.3
PGR142G4039 Punica granatum HOM05D005630 ORTHO05D006979 2.0e-48 196.1 127 73.2
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 3.4e-48 195.3 127 72.4
RcHm_v2.0_Chr2g0086501 Rosa chinensis HOM05D005630 ORTHO05D006979 7.6e-48 194.1 151 67.5
vmacro07529 Vaccinium macrocarpon HOM05D005630 ORTHO05D006979 7.6e-48 194.1 100 89.0
Gohir.D05G282200 Gossypium hirsutum HOM05D005630 ORTHO05D006979 1.0e-47 193.7 125 75.2
Gorai.009G295600 Gossypium raimondii HOM05D005630 ORTHO05D006979 1.0e-47 193.7 125 75.2
Duzib128G0941 Durio zibethinus HOM05D005630 ORTHO05D006979 2.9e-47 192.2 128 71.1
MD15G1158000 Malus domestica HOM05D005630 ORTHO05D006979 3.8e-47 191.8 130 71.5
Potri.018G113200 Populus trichocarpa HOM05D005630 ORTHO05D006979 3.8e-47 191.8 120 75.8
Gohir.A05G280400 Gossypium hirsutum HOM05D005630 ORTHO05D006979 8.4e-47 190.7 125 73.6
unitig_46.g18303 Utricularia gibba HOM05D005630 ORTHO05D006979 1.1e-46 190.3 121 73.6
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 1.4e-46 189.9 126 69.8
COL.COLO4_35448 Corchorus olitorius HOM05D000321 ORTHO05D000204 4.2e-46 188.3 120 73.3
Eucgr.H01228 Eucalyptus grandis HOM05D005630 ORTHO05D006979 4.2e-46 188.3 128 68.0
Eucgr.H01921 Eucalyptus grandis HOM05D005630 ORTHO05D006979 1.2e-45 186.8 128 67.2
GSVIVG01001041001 Vitis vinifera HOM05D005630 ORTHO05D006979 1.6e-45 186.4 112 77.7
CsaV3_3G004770 Cucumis sativus L. HOM05D005630 ORTHO05D006979 2.7e-45 185.7 119 73.1
Manes.03G015700 Manihot esculenta HOM05D005630 ORTHO05D006979 4.6e-45 184.9 121 71.9
SalBow1G1736 Salvia bowleyana HOM05D005630 ORTHO05D006979 4.6e-45 184.9 120 70.8
DCAR_019353 Daucus carota HOM05D000452 ORTHO05D000647 6.0e-45 184.5 122 69.7
EL10Ac4g09637 Beta vulgaris HOM05D005630 ORTHO05D006979 7.9e-45 184.1 125 69.6
MELO3C014176.2 Cucumis melo HOM05D005630 ORTHO05D006979 1.8e-44 183.0 119 72.3
Ciclev10009802m.g Citrus clementina HOM05D005630 ORTHO05D006979 3.9e-44 181.8 127 70.1
Oeu040774.1 Olea europaea HOM05D005630 ORTHO05D006979 3.9e-44 181.8 169 55.6
SGA_v2.0_scaffold336G49163 Striga asiatica HOM05D005630 ORTHO05D006979 8.7e-44 180.6 123 68.3
FvH4_1g01540 Fragaria vesca HOM05D005630 ORTHO05D006979 1.1e-43 180.3 118 69.5
FAN28G1107 Fragaria x ananassa HOM05D005630 ORTHO05D006979 1.1e-43 180.3 118 69.5
Dinv41416 Davidia involucrata HOM05D005630 ORTHO05D006979 1.9e-43 179.5 108 77.8
FAN26G1041 Fragaria x ananassa HOM05D005630 ORTHO05D006979 1.9e-43 179.5 118 68.6
Lj3g0020108 Lotus japonicus HOM05D005630 ORTHO05D006979 2.5e-43 179.1 128 67.2
Lj2g0025219 Lotus japonicus HOM05D005630 ORTHO05D006979 1.6e-42 176.4 119 68.1
THA.LOC104826572 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 2.1e-42 176.0 128 66.4
Ca_08945_v3 Cicer arietinum L. HOM05D005630 ORTHO05D006979 1.1e-41 173.7 119 68.9
Glyma.01G008800 Glycine max HOM05D005630 ORTHO05D006979 4.1e-41 171.8 119 68.1
Glyma.16G077600 Glycine max HOM05D005630 ORTHO05D006979 4.1e-41 171.8 119 68.1
Phvul.004G170400 Phaseolus vulgaris HOM05D005630 ORTHO05D006979 4.1e-41 171.8 147 66.0
Psat3g037680 Pisum sativum HOM05D005630 ORTHO05D006979 5.3e-41 171.4 119 66.4
VMungo0464G1149 Vigna mungo HOM05D005630 ORTHO05D006979 5.3e-41 171.4 119 68.1
Aa31LG8G5570 Aethionema arabicum HOM05D005630 ORTHO05D006979 9.0e-41 170.6 118 64.4
TPR.G21379 Trifolium pratense HOM05D005630 ORTHO05D006979 9.0e-41 170.6 120 66.7
AL3G32110 Arabidopsis lyrata HOM05D005630 ORTHO05D006979 1.2e-40 170.2 102 75.5
AT3G18760 Arabidopsis thaliana HOM05D005630 ORTHO05D006979 1.2e-40 170.2 102 75.5
BcaC05g28577 Brassica carinata HOM05D005630 ORTHO05D006979 1.2e-40 170.2 102 76.5
A05p30870 Brassica napus HOM05D005630 ORTHO05D006979 1.2e-40 170.2 102 76.5
C05p46800 Brassica napus HOM05D005630 ORTHO05D006979 1.2e-40 170.2 102 76.5
BolC5t33410H Brassica oleracea HOM05D005630 ORTHO05D006979 1.2e-40 170.2 102 76.5
BraA05t21929Z Brassica rapa HOM05D005630 ORTHO05D006979 1.2e-40 170.2 102 76.5
Lalb_Chr01g0020901 Lupinus albus HOM05D005630 ORTHO05D006979 1.5e-40 169.9 119 67.2
BcaB06g25926 Brassica carinata HOM05D005630 ORTHO05D006979 3.4e-40 168.7 131 62.6
CARHR094150 Cardamine hirsuta HOM05D005630 ORTHO05D006979 4.5e-40 168.3 102 74.5
PSO210G0346 Papaver somniferum HOM05D005630 ORTHO05D006979 5.9e-40 167.9 104 76.0
PSO210G6044 Papaver somniferum HOM05D005630 ORTHO05D006979 5.9e-40 167.9 104 76.0
C03p49710 Brassica napus HOM05D005630 ORTHO05D006979 7.6e-40 167.5 124 62.9
Sp3g16800 Schrenkiella parvula HOM05D005630 ORTHO05D006979 7.6e-40 167.5 102 74.5
Thhalv10021733m.g Eutrema salsugineum HOM05D005630 ORTHO05D006979 1.3e-39 166.8 103 71.8
Os01g0220300 Oryza sativa ssp. japonica HOM05D005630 ORTHO05D006979 1.3e-39 166.8 118 63.6
TPR.G31501 Trifolium pratense HOM05D005630 ORTHO05D006979 1.3e-39 166.8 120 65.0
BcaB04g19003 Brassica carinata HOM05D005630 ORTHO05D006979 1.7e-39 166.4 102 73.5
THA.LOC104815401 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 3.8e-39 165.2 121 63.6
Carub.0003s1855 Capsella rubella HOM05D005630 ORTHO05D006979 5.0e-39 164.9 102 71.6
arahy.Tifrunner.gnm1.ann1.N9H741 Arachis hypogaea HOM05D005630 ORTHO05D006979 6.5e-39 164.5 108 68.5
BolC3t17269H Brassica oleracea HOM05D005630 ORTHO05D006979 6.5e-39 164.5 121 63.6
Medtr7g103190 Medicago truncatula HOM05D005630 ORTHO05D006979 6.5e-39 164.5 119 65.5
BraA03t13240Z Brassica rapa HOM05D005630 ORTHO05D006979 8.5e-39 164.1 102 71.6
VMungo0464G1592 Vigna mungo HOM05D005630 ORTHO05D006979 2.5e-38 162.5 119 64.7
Medtr6g088605 Medicago truncatula HOM05D005630 ORTHO05D006979 4.2e-38 161.8 119 62.2
FAN23G2038 Fragaria x ananassa HOM05D005630 ORTHO05D006979 7.2e-38 161.0 174 48.9
Psat5g026240 Pisum sativum HOM05D005630 ORTHO05D006979 2.7e-37 159.1 98 72.4
unitig_48.g30288 Utricularia gibba HOM05D005630 ORTHO05D006979 4.6e-37 158.3 104 70.2
A03p40820 Brassica napus HOM05D005630 ORTHO05D006979 8.7e-36 154.1 124 59.7
Thecc.10G171800 Theobroma cacao HOM05D005630 ORTHO05D006979 2.5e-35 152.5 98 72.4
Zm00001eb119770 Zea mays HOM05D005630 ORTHO05D006979 3.3e-35 152.1 119 59.7
HPP92_008634 Vanilla planifolia HOM05D005630 ORTHO05D006979 4.3e-35 151.8 118 59.3
FAN19G2317 Fragaria x ananassa HOM05D005630 ORTHO05D006979 3.7e-34 148.7 118 61.0
MBI07_g35858_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 4.8e-34 148.3 87 79.3
CDE02G3819 Ceratophyllum demersum HOM05D005630 ORTHO05D006979 1.7e-31 139.8 84 76.2
Ah.01g003710 Amaranthus hybridus HOM05D005630 ORTHO05D006979 6.5e-31 137.9 94 70.2
AagrBONN_evm.TU.Sc2ySwM_117.2919 Anthoceros agrestis HOM05D005630 ORTHO05D006979 9.7e-27 124.0 101 55.4
Pp3c3_21570 Physcomitrium patens HOM05D005630 ORTHO05D006979 9.7e-27 124.0 97 52.6
Eucgr.B02192 Eucalyptus grandis HOM05D005630 ORTHO05D006979 2.8e-26 122.5 83 66.3
Lj7A451T27 Lonicera japonica HOM05D005630 ORTHO05D006979 5.9e-24 114.8 61 86.9
SMO146G0230 Selaginella moellendorffii HOM05D005630 ORTHO05D006979 1.3e-23 113.6 108 48.1
Mapoly0179s0002 Marchantia polymorpha HOM05D005630 ORTHO05D006979 8.5e-23 110.9 97 52.6
SGA_v2.0_scaffold416G51224 Striga asiatica HOM05D005630 ORTHO05D006979 2.3e-20 102.8 61 75.4
CBR_g37184 Chara braunii HOM05D005630 ORTHO05D006979 3.9e-20 102.1 98 51.0
AUR62001080 Chenopodium quinoa HOM05D005630 ORTHO05D006979 8.8e-20 100.9 61 75.4
AUR62004880 Chenopodium quinoa HOM05D005630 ORTHO05D006979 1.1e-17 94.0 61 70.5
Cpa.g.sc20.36 Carica papaya HOM05D005630 ORTHO05D006979 9.1e-17 90.9 86 54.7
Nn2g11495 Nelumbo nucifera HOM05D005630 ORTHO05D006979 1.6e-16 90.1 54 74.1
SEGI_16423 Sequoiadendron giganteum HOM05D005630 ORTHO05D006979 7.7e-16 87.8 85 49.4
MBI07_g26347_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 1.0e-15 87.4 68 63.2
MD16G1239100 Malus domestica HOM05D005630 ORTHO05D006979 6.5e-15 84.7 57 68.4
Eucgr.L01073 Eucalyptus grandis HOM05D005630 ORTHO05D006979 1.5e-14 83.6 68 55.9
ATR1096G006 Amborella trichopoda HOM05D005630 ORTHO05D006979 2.1e-13 79.7 65 61.5
SalBow1G6627 Salvia bowleyana HOM05D005630 ORTHO05D006979 4.7e-13 78.6 54 64.8
TPR.G10852 Trifolium pratense HOM05D005630 ORTHO05D006979 4.0e-12 75.5 49 71.4
AUR62039003 Chenopodium quinoa HOM05D005630 ORTHO05D006979 3.7e-10 68.9 48 62.5
Cre12.g558000 Chlamydomonas reinhardtii HOM05D005630 ORTHO05D006979 9.1e-09 64.3 96 35.4
MCO04G088 Micromonas commoda HOM05D005630 ORTHO05D006979 1.2e-08 63.9 101 29.7
Medtr5g037160 Medicago truncatula HOM05D005630 ORTHO05D000782 4.2e-06 55.5 33 69.7


User provided reference genes

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