Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 4.8e-252 874.0 440 100.0
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 1.0e-249 866.3 440 99.3
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 3.1e-243 844.7 439 96.8
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 5.0e-241 837.4 441 95.7
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 8.9e-230 800.0 432 92.8
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 7.5e-229 797.0 502 82.5
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 1.1e-190 670.2 436 74.5
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 2.6e-189 665.6 436 74.3
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 8.7e-185 650.6 439 73.3
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 8.7e-185 650.6 432 72.9
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 4.3e-184 648.3 432 72.5
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 1.4e-182 643.3 433 73.2
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 3.1e-182 642.1 439 72.7
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 9.0e-182 640.6 418 79.7
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.5e-181 639.8 439 71.8
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.5e-181 639.8 439 71.8
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 1.3e-180 636.7 436 71.8
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 8.4e-180 634.0 436 71.6
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.4e-179 633.3 430 72.6
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 9.3e-179 630.6 433 71.6
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 1.2e-178 630.2 430 71.2
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 1.6e-178 629.8 436 70.6
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.6e-178 629.8 433 71.4
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 1.6e-178 629.8 433 71.4
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 2.7e-178 629.0 435 71.0
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 6.0e-178 627.9 433 71.4
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 1.5e-176 623.2 439 71.3
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 1.5e-176 623.2 430 70.2
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 9.6e-176 620.5 428 72.0
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 1.3e-175 620.2 423 71.2
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 1.6e-175 619.8 435 70.3
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 2.1e-175 619.4 439 70.4
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 4.0e-174 615.1 440 69.1
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 5.3e-174 614.8 436 68.3
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 1.2e-173 613.6 440 70.0
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 1.5e-173 613.2 436 69.0
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 2.0e-173 612.8 424 70.5
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 2.0e-173 612.8 437 69.8
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 2.6e-173 612.5 438 69.2
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 5.8e-173 611.3 429 70.4
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 5.8e-173 611.3 481 64.9
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 7.6e-173 610.9 436 69.3
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 9.9e-173 610.5 436 67.9
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.7e-172 609.8 435 69.7
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 2.9e-172 609.0 435 69.9
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 2.9e-172 609.0 407 73.7
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 1.1e-171 607.1 478 65.3
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.1e-171 607.1 436 68.8
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.9e-171 606.3 431 69.4
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 1.9e-171 606.3 425 69.9
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 2.5e-171 605.9 436 68.1
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 4.2e-171 605.1 437 68.6
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 5.5e-171 604.7 438 68.3
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 1.6e-170 603.2 434 67.7
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 4.6e-170 601.7 439 68.6
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 6.0e-170 601.3 433 67.9
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 7.9e-170 600.9 427 69.3
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 1.3e-169 600.1 438 68.3
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 3.0e-169 599.0 440 67.0
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 3.9e-169 598.6 434 68.7
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 6.7e-169 597.8 403 73.0
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 5.6e-168 594.7 434 68.9
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 5.6e-168 594.7 436 66.7
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 5.6e-168 594.7 436 67.7
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 7.4e-168 594.3 432 67.6
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 2.1e-167 592.8 469 65.5
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 2.8e-167 592.4 435 67.8
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 4.8e-167 591.7 434 68.7
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 6.2e-167 591.3 455 65.5
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 1.4e-166 590.1 433 68.4
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 4.0e-166 588.6 434 68.7
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 5.3e-166 588.2 439 68.8
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 1.5e-165 586.6 436 66.7
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 3.8e-164 582.0 434 67.5
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 1.9e-163 579.7 436 65.8
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 7.1e-163 577.8 439 66.5
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 7.9e-162 574.3 423 67.4
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 3.3e-160 568.9 438 65.8
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 1.6e-159 566.6 433 66.3
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 2.2e-159 566.2 406 70.4
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 2.4e-158 562.8 444 63.3
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 8.5e-156 554.3 427 66.3
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.8e-153 546.6 435 64.8
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 3.0e-153 545.8 382 68.8
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 2.5e-152 542.7 406 69.0
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 1.3e-151 540.4 425 64.9
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 4.8e-151 538.5 454 60.6
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 2.0e-144 516.5 412 63.8
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 7.4e-144 514.6 424 62.7
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 1.7e-143 513.5 433 61.7
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 3.5e-141 505.8 436 60.1
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 2.5e-139 499.6 390 63.8
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 2.1e-138 496.5 334 73.7
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 5.7e-136 488.4 342 72.2
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 2.8e-135 486.1 377 64.5
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 2.0e-133 479.9 435 56.1
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 7.7e-133 478.0 418 56.0
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 1.3e-132 477.2 332 70.2
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 1.1e-131 474.2 337 68.0
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 3.2e-131 472.6 335 68.4
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 5.2e-129 465.3 417 57.6
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 1.4e-126 457.2 458 54.8
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 1.7e-124 450.3 344 65.7
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 2.2e-124 449.9 344 64.5
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 1.5e-123 447.2 422 54.3
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 9.4e-123 444.5 351 63.0
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 1.2e-120 437.6 312 69.9
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 1.7e-116 423.7 409 54.3
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 5.7e-112 408.7 340 63.5
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.1e-110 404.4 439 51.3
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 8.9e-105 384.8 575 38.4
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 5.8e-104 382.1 276 69.2
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 1.8e-97 360.5 270 65.6
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 6.4e-95 352.1 288 62.2
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 3.0e-92 343.2 378 51.9
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 6.2e-90 335.5 368 50.8
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 2.3e-89 333.6 209 77.5
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 4.0e-89 332.8 252 67.5
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 3.7e-87 326.2 430 44.4
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 2.4e-86 323.6 282 61.7
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 5.6e-83 312.4 354 50.3
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 7.6e-80 302.0 406 44.1
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 1.3e-79 301.2 433 42.5
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 4.9e-79 299.3 430 40.5
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 1.9e-75 287.3 235 63.0
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 2.5e-67 260.4 152 78.3
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 9.6e-67 258.5 473 35.7
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 1.3e-66 258.1 235 55.3
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 5.3e-65 252.7 152 75.7
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 6.9e-65 252.3 221 57.9
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 7.1e-62 242.3 363 40.5
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 1.3e-60 238.0 150 73.3
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 3.0e-60 236.9 147 75.5
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 4.8e-58 229.6 424 35.6
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 8.4e-55 218.8 429 35.2
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 4.2e-54 216.5 181 63.0
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 2.7e-53 213.8 143 69.2
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 3.5e-53 213.4 148 73.6
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 1.8e-52 211.1 142 71.1
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 1.1e-51 208.4 260 50.8
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 3.1e-49 200.3 118 79.7
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 3.1e-41 173.7 111 74.8
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 9.4e-30 135.6 92 67.4
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 9.4e-30 135.6 92 67.4
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 5.1e-28 129.8 126 61.1
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 1.4e-25 121.7 440 26.1
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 2.6e-24 117.5 79 64.6
CAN.G890.17 Capsicum annuum HOM05D004598 ORTHO05D005550 2.9e-23 114.0 78 79.5
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.2e-21 108.6 72 69.4
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 4.2e-14 83.6 332 26.8
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 1.6e-13 81.6 110 48.2
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 1.7e-10 71.6 50 68.0
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 3.7e-10 70.5 43 62.8
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 3.1e-09 67.4 53 60.4
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 4.5e-08 63.5 58 51.7
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 5.9e-08 63.2 51 56.9
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 5.9e-08 63.2 58 51.7


User provided reference genes

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