Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 3.3e-90 335.1 178 100.0
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 2.8e-89 332.0 178 98.3
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 1.5e-79 299.7 178 88.8
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 3.7e-78 295.0 178 87.6
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 3.0e-75 285.4 157 96.8
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 8.1e-73 277.3 184 81.0
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.1e-69 266.9 167 85.0
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 2.0e-63 246.1 178 73.0
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.9e-61 239.6 178 68.5
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 2.4e-61 239.2 178 69.1
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 3.2e-61 238.8 178 69.1
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 6.0e-60 234.6 178 68.0
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 8.7e-59 230.7 178 68.0
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 7.3e-58 227.6 175 68.0
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 9.6e-58 227.3 172 66.3
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 8.1e-57 224.2 177 66.1
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.4e-56 223.4 179 64.2
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.8e-56 223.0 172 65.1
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 3.1e-56 222.2 178 63.5
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 5.3e-56 221.5 179 63.7
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 4.5e-55 218.4 167 68.3
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 4.5e-55 218.4 163 68.7
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 5.8e-55 218.0 179 62.6
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 5.8e-55 218.0 166 70.5
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 5.8e-55 218.0 175 66.9
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 2.2e-54 216.1 167 67.7
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 2.9e-54 215.7 167 67.1
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 2.9e-54 215.7 178 63.5
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 4.9e-54 214.9 163 68.1
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.4e-53 213.4 179 64.8
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 1.0e-51 207.2 178 60.1
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 1.8e-51 206.5 171 63.7
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 1.8e-51 206.5 171 63.7
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 1.8e-51 206.5 179 62.0
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 1.1e-50 203.8 172 61.6
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 2.5e-50 202.6 177 61.6
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 4.3e-50 201.8 171 62.0
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 5.6e-50 201.4 172 60.5
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 9.6e-50 200.7 165 63.6
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 2.1e-49 199.5 156 67.3
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 1.1e-48 197.2 171 59.6
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 2.4e-48 196.1 175 58.9
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 2.4e-48 196.1 163 63.8
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 5.3e-48 194.9 175 59.4
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 1.5e-47 193.4 163 61.3
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.5e-47 193.4 192 56.8
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 1.5e-47 193.4 163 61.3
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 4.5e-47 191.8 153 67.3
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 5.8e-47 191.4 165 62.4
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 1.3e-46 190.3 172 58.1
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 2.2e-46 189.5 162 59.9
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 6.4e-46 188.0 165 59.4
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 8.4e-46 187.6 162 59.9
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 1.1e-45 187.2 162 60.5
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 1.9e-45 186.4 162 59.9
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 1.9e-45 186.4 162 59.9
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 4.2e-45 185.3 167 61.7
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 7.1e-45 184.5 162 58.0
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 9.3e-45 184.1 153 64.7
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 9.3e-45 184.1 153 64.7
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 1.2e-44 183.7 167 56.9
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 1.2e-44 183.7 162 58.0
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 2.1e-44 183.0 178 55.6
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 3.5e-44 182.2 166 57.2
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 3.5e-44 182.2 166 57.2
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 3.5e-44 182.2 177 53.7
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 4.6e-44 181.8 177 56.5
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 7.9e-44 181.0 162 57.4
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 7.9e-44 181.0 164 56.7
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 1.0e-43 180.6 152 59.2
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 1.0e-43 180.6 155 60.0
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 2.3e-43 179.5 172 54.7
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.0e-43 179.1 138 65.2
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 3.9e-43 178.7 162 55.6
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 5.1e-43 178.3 177 53.7
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 5.1e-43 178.3 154 65.6
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 6.7e-43 177.9 165 57.0
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 6.7e-43 177.9 178 56.2
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.1e-42 177.2 173 53.2
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 3.3e-42 175.6 156 60.9
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 3.3e-42 175.6 153 60.1
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 4.3e-42 175.3 173 54.9
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 7.4e-42 174.5 163 58.3
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 9.6e-42 174.1 177 53.1
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 1.6e-41 173.3 156 59.0
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 2.8e-41 172.6 187 51.9
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 3.7e-41 172.2 141 63.1
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 1.4e-40 170.2 162 57.4
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.4e-40 170.2 162 58.0
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 3.1e-40 169.1 178 50.6
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 3.1e-40 169.1 177 56.5
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 6.9e-40 167.9 147 59.9
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 9.0e-40 167.5 155 58.1
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.2e-39 167.2 162 56.2
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 1.2e-39 167.2 129 69.8
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.5e-39 166.8 226 46.0
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 2.6e-39 166.0 146 61.6
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 2.6e-39 166.0 165 52.1
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 3.4e-39 165.6 145 61.4
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 3.4e-39 165.6 177 49.2
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 3.4e-39 165.6 177 48.6
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 7.6e-39 164.5 166 53.0
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 2.2e-38 162.9 165 51.5
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 2.2e-38 162.9 129 65.1
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 2.9e-38 162.5 221 46.6
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 8.4e-38 161.0 158 55.1
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 1.1e-37 160.6 145 61.4
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 4.2e-37 158.7 229 44.5
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 5.5e-37 158.3 164 50.6
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 9.3e-37 157.5 156 53.2
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 9.3e-37 157.5 156 53.2
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 1.2e-36 157.1 140 62.9
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 2.1e-36 156.4 165 47.9
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 4.6e-36 155.2 179 50.8
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 7.9e-36 154.5 154 58.4
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 1.3e-35 153.7 162 52.5
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 1.8e-35 153.3 176 51.7
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 3.3e-34 149.1 131 59.5
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 7.4e-34 147.9 165 49.1
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 1.3e-33 147.1 137 58.4
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 8.2e-33 144.4 177 46.9
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 1.8e-32 143.3 174 47.1
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 5.3e-32 141.7 129 58.9
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 9.0e-32 141.0 178 48.9
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 2.6e-31 139.4 262 37.8
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 2.6e-31 139.4 115 61.7
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 7.6e-31 137.9 141 53.2
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 2.2e-30 136.3 169 49.1
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 1.1e-29 134.0 179 45.3
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 4.2e-29 132.1 91 72.5
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 1.6e-28 130.2 115 61.7
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 7.9e-28 127.9 83 69.9
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 1.8e-27 126.7 86 67.4
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 2.3e-27 126.3 142 48.6
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 1.4e-24 117.1 173 39.3
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 1.3e-17 94.0 75 70.7
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 3.7e-17 92.4 140 43.6
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 8.2e-17 91.3 85 63.5
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 1.1e-16 90.9 115 49.6
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 2.4e-16 89.7 76 68.4
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 6.9e-16 88.2 91 54.9
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 6.9e-16 88.2 76 61.8
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 1.5e-15 87.0 86 59.3
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 1.5e-15 87.0 111 53.2
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 2.6e-15 86.3 166 33.1
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 2.6e-15 86.3 168 35.1
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 5.9e-15 85.1 76 59.2
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 2.0e-10 70.1 67 62.7
Cre09.g387504 Chlamydomonas reinhardtii HOM05D004607 ORTHO05D005836 1.4e-08 63.9 150 31.3
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 4.1e-08 62.4 61 55.7
CBR_g18647 Chara braunii HOM05D004607 ORTHO05D005836 2.0e-07 60.1 160 30.6
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 2.0e-07 60.1 69 55.1
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 2.0e-07 60.1 69 55.1


User provided reference genes

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