Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g082600.4 Solanum lycopersicum HOM05D006716 ORTHO05D008396 1.3e-57 226.1 112 100.0
Sopen02g027300 Solanum pennellii HOM05D006716 ORTHO05D008396 9.6e-56 219.9 112 99.1
Solyc02g082720.4 Solanum lycopersicum HOM05D006716 ORTHO05D008396 4.1e-46 188.0 110 83.6
Sopen02g027470 Solanum pennellii HOM05D006716 ORTHO05D008396 3.4e-45 184.9 110 82.7
CAN.G1238.8 Capsicum annuum HOM05D006716 ORTHO05D008396 3.7e-39 164.9 97 82.5
Peaxi162Scf00475g00124 Petunia axillaris HOM05D006716 ORTHO05D008396 3.7e-39 164.9 111 71.2
Nitab4.5_0001339g0090 Nicotiana tabacum HOM05D006716 ORTHO05D008396 7.7e-37 157.1 110 69.1
Manes.S095408 Manihot esculenta HOM05D006716 ORTHO05D008396 4.2e-35 151.4 110 65.5
CAN.G497.60 Capsicum annuum HOM05D006716 ORTHO05D008396 1.1e-32 143.3 97 73.2
Peaxi162Scf00226g00716 Petunia axillaris HOM05D006716 ORTHO05D008396 6.3e-31 137.5 110 58.2
TWI31G0239 Tripterygium wilfordii HOM05D006716 ORTHO05D008396 2.4e-30 135.6 109 59.6
CAN.G497.69 Capsicum annuum HOM05D003495 ORTHO05D004159 3.1e-30 135.2 106 63.2
Peaxi162Scf00663g00027 Petunia axillaris HOM05D006716 ORTHO05D008396 2.2e-28 129.0 100 65.0
Peaxi162Scf00038g00840 Petunia axillaris HOM05D006716 ORTHO05D008396 1.1e-27 126.7 95 65.3
Peaxi162Scf00663g00009 Petunia axillaris HOM05D006716 ORTHO05D008396 2.5e-27 125.6 93 65.6
Peaxi162Scf00168g01523 Petunia axillaris HOM05D006716 ORTHO05D008396 3.2e-27 125.2 101 60.4
Ah.10g035290 Amaranthus hybridus HOM05D006716 ORTHO05D008396 3.3e-24 115.2 108 48.1
Nitab4.5_0007530g0050 Nicotiana tabacum HOM05D006716 ORTHO05D008396 3.3e-24 115.2 74 71.6
SGA_v2.0_scaffold50G18515 Striga asiatica HOM05D006716 ORTHO05D008396 8.2e-23 110.5 98 54.1
Aqoxy4G01949 Aquilegia oxysepala HOM05D006716 ORTHO05D008396 1.1e-22 110.2 111 47.7
Medtr5g464730 Medicago truncatula HOM05D006716 ORTHO05D008396 1.2e-21 106.7 105 46.7
Nitab4.5_0001187g0060 Nicotiana tabacum HOM05D006716 ORTHO05D008396 2.0e-21 105.9 74 64.9
Rhsim09G0048400 Rhododendron simsii HOM05D006716 ORTHO05D008396 3.5e-21 105.1 111 47.7
Ah.10g035300 Amaranthus hybridus HOM05D006716 ORTHO05D008396 1.3e-20 103.2 98 50.0
Hma1.2p1_0310F.1_g120920 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 6.5e-20 100.9 111 53.2
TPR.G40231 Trifolium pratense HOM05D006716 ORTHO05D008396 1.1e-19 100.1 107 44.9
Hma1.2p1_0003F.1_g003620 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 1.5e-19 99.8 111 45.0
Aqoxy4G01948 Aquilegia oxysepala HOM05D006716 ORTHO05D008396 2.5e-19 99.0 108 45.4
TPR.G36640 Trifolium pratense HOM05D006716 ORTHO05D008396 2.5e-19 99.0 107 44.9
Rhsim01G0092700 Rhododendron simsii HOM05D006716 ORTHO05D008396 5.5e-19 97.8 105 45.7
Rhsim01G0093800 Rhododendron simsii HOM05D006716 ORTHO05D008396 5.5e-19 97.8 105 45.7
CAN.G497.65 Capsicum annuum HOM05D006716 ORTHO05D008396 1.2e-18 96.7 63 76.2
Hma1.2p1_0154F.1_g068000 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 1.2e-18 96.7 111 44.1
Peaxi162Scf00168g01522 Petunia axillaris HOM05D006716 ORTHO05D008396 8.0e-18 94.0 103 55.3
CSS0050127 Camellia sinensis var. sinensis HOM05D006716 ORTHO05D008396 1.8e-17 92.8 106 44.3
DCAR_001167 Daucus carota HOM05D006716 ORTHO05D008396 2.6e-16 89.0 95 46.3
Rhsim01G0092600 Rhododendron simsii HOM05D006716 ORTHO05D008396 2.6e-16 89.0 110 43.6
DCAR_024034 Daucus carota HOM05D006716 ORTHO05D008396 9.7e-16 87.0 109 40.4
Medtr5g064160 Medicago truncatula HOM05D006716 ORTHO05D008396 9.7e-16 87.0 105 44.8
Rhsim02G0098700 Rhododendron simsii HOM05D006716 ORTHO05D008396 3.7e-15 85.1 105 43.8
SGA_v2.0_scaffold57G20303 Striga asiatica HOM05D006716 ORTHO05D008396 3.7e-15 85.1 106 43.4
Potri.018G001550 Populus trichocarpa HOM05D006716 ORTHO05D008396 4.8e-15 84.7 108 39.8
Duzib114G0774 Durio zibethinus HOM05D006716 ORTHO05D008396 8.2e-15 84.0 108 41.7
Potri.018G001301 Populus trichocarpa HOM05D006716 ORTHO05D008396 1.1e-14 83.6 108 41.7
Rhsim01G0093700 Rhododendron simsii HOM05D000991 ORTHO05D008396 1.4e-14 83.2 110 43.6
Peaxi162Scf00475g00024 Petunia axillaris HOM05D006716 ORTHO05D008396 4.1e-14 81.6 61 68.9
Potri.018G001500 Populus trichocarpa HOM05D006716 ORTHO05D008396 9.1e-14 80.5 113 37.2
TPR.G15037 Trifolium pratense HOM05D006716 ORTHO05D008396 1.6e-13 79.7 76 50.0
DCAR_001924 Daucus carota HOM05D006716 ORTHO05D008396 2.0e-13 79.3 108 42.6
Rhsim02G0098800 Rhododendron simsii HOM05D006716 ORTHO05D008396 2.0e-13 79.3 140 35.7
Lj6A58T50 Lonicera japonica HOM05D006716 ORTHO05D008396 2.7e-13 79.0 89 49.4
Peaxi162Scf01072g00410 Petunia axillaris HOM05D006716 ORTHO05D008396 5.9e-13 77.8 100 47.0
Peaxi162Scf00226g00715 Petunia axillaris HOM05D006716 ORTHO05D008396 1.3e-12 76.6 60 56.7
Duzib114G0505 Durio zibethinus HOM05D006716 ORTHO05D008396 2.2e-12 75.9 109 37.6
Rhsim01G0093600 Rhododendron simsii HOM05D006716 ORTHO05D008396 5.0e-12 74.7 154 30.5
TPR.G29566 Trifolium pratense HOM05D006716 ORTHO05D008396 8.5e-12 73.9 108 38.9
Thecc.05G273300 Theobroma cacao HOM05D006716 ORTHO05D008396 1.1e-11 73.6 101 42.6
PSO478G1238 Papaver somniferum HOM05D006716 ORTHO05D008396 3.2e-11 72.0 104 38.5
Duzib114G0358 Durio zibethinus HOM05D006716 ORTHO05D008396 7.2e-11 70.9 111 38.7
SGA_v2.0_scaffold57G20300 Striga asiatica HOM05D006716 ORTHO05D008396 2.1e-10 69.3 97 36.1
vmacro15745 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 3.6e-10 68.6 80 43.8
DCAR_002644 Daucus carota HOM05D006716 ORTHO05D008396 4.7e-10 68.2 63 50.8
AT5G27660 Arabidopsis thaliana HOM05D005214 ORTHO05D005861 4.0e-09 65.1 101 37.6
MD04G1201900 Malus domestica HOM05D005214 ORTHO05D005861 5.2e-09 64.7 101 36.6
PSO478G4756 Papaver somniferum HOM05D006716 ORTHO05D008396 5.2e-09 64.7 101 34.7
SEGI_14490 Sequoiadendron giganteum HOM05D005214 ORTHO05D005861 5.2e-09 64.7 99 36.4
Potri.013G018300 Populus trichocarpa HOM05D005214 ORTHO05D005861 8.8e-09 63.9 83 39.8
MD12G1215600 Malus domestica HOM05D005214 ORTHO05D005861 1.2e-08 63.5 83 41.0
CAN.G394.37 Capsicum annuum HOM05D005214 ORTHO05D005861 2.0e-08 62.8 83 38.6
Duzib177G0485 Durio zibethinus HOM05D006716 ORTHO05D008396 2.6e-08 62.4 84 39.3
Lj9A35T20 Lonicera japonica HOM05D006716 ORTHO05D008396 2.6e-08 62.4 107 36.4
Carub.0006s2493 Capsella rubella HOM05D005214 ORTHO05D005861 3.4e-08 62.0 83 38.6
TPR.G12856 Trifolium pratense HOM05D006716 ORTHO05D008396 3.4e-08 62.0 94 40.4
Ah.10g035330 Amaranthus hybridus HOM05D006716 ORTHO05D008396 4.4e-08 61.6 73 43.8
CSS0011840 Camellia sinensis var. sinensis HOM05D005214 ORTHO05D005861 4.4e-08 61.6 83 42.2
CAN.G619.10 Capsicum annuum HOM05D005214 ORTHO05D005861 4.4e-08 61.6 83 37.3
Lj2P563T13 Lonicera japonica HOM05D006716 ORTHO05D008396 5.7e-08 61.2 65 49.2
CSS0000343 Camellia sinensis var. sinensis HOM05D005214 ORTHO05D005861 7.5e-08 60.8 83 42.2
Actinidia05683 Actinidia chinensis HOM05D005214 ORTHO05D005861 9.8e-08 60.5 82 41.5
DCAR_022150 Daucus carota HOM05D005214 ORTHO05D005861 9.8e-08 60.5 83 34.9
Migut.N01980 Erythranthe guttata HOM05D005214 ORTHO05D005861 9.8e-08 60.5 101 35.6
Thhalv10004245m.g Eutrema salsugineum HOM05D005214 ORTHO05D005861 9.8e-08 60.5 83 37.3
Sabra13G0021100 Salix brachista HOM05D005214 ORTHO05D005861 9.8e-08 60.5 83 36.1
BcaNung04541 Brassica carinata HOM05D005214 ORTHO05D005861 1.3e-07 60.1 88 36.4
Gohir.D08G226000 Gossypium hirsutum HOM05D005214 ORTHO05D005861 1.3e-07 60.1 82 37.8
QL03p021693 Quercus lobata HOM05D005214 ORTHO05D005861 1.3e-07 60.1 98 39.8
Sp2g20820 Schrenkiella parvula HOM05D005214 ORTHO05D005861 1.3e-07 60.1 83 37.3
Duzib128G1190 Durio zibethinus HOM05D005214 ORTHO05D005861 1.7e-07 59.7 82 37.8
Gohir.A08G209100 Gossypium hirsutum HOM05D005214 ORTHO05D005861 1.7e-07 59.7 82 37.8
Gorai.004G240000 Gossypium raimondii HOM05D005214 ORTHO05D005861 1.7e-07 59.7 82 37.8
MBI07_g30867_MAGBIO Magnolia biondii HOM05D005214 ORTHO05D005861 1.7e-07 59.7 83 41.0
TWI12G0439 Tripterygium wilfordii HOM05D005214 ORTHO05D005861 1.7e-07 59.7 78 41.0
HPP92_004548 Vanilla planifolia HOM05D005214 ORTHO05D005861 1.7e-07 59.7 102 32.4
MSTRG.27985 Avicennia marina HOM05D005214 ORTHO05D005861 2.2e-07 59.3 80 36.2
Migut.N02017 Erythranthe guttata HOM05D005214 ORTHO05D005861 2.2e-07 59.3 101 34.7
Hma1.2p1_1212F.1_g267370 Hydrangea macrophylla HOM05D005214 ORTHO05D005861 2.2e-07 59.3 83 37.3
Pp3c6_6410 Physcomitrium patens HOM05D005214 ORTHO05D005861 2.2e-07 59.3 101 32.7
Prupe.6G322200 Prunus persica HOM05D005214 ORTHO05D005861 2.2e-07 59.3 83 38.6
Mapoly0047s0084 Marchantia polymorpha HOM05D005214 ORTHO05D005861 2.8e-07 58.9 89 39.3
Rhsim07G0026700 Rhododendron simsii HOM05D006716 ORTHO05D008396 2.8e-07 58.9 63 46.0
vmacro12393 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 2.8e-07 58.9 59 47.5
vmacro15748 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 2.8e-07 58.9 73 42.5
Zm00001eb168260 Zea mays HOM05D005214 ORTHO05D005861 2.8e-07 58.9 81 40.7
CBR_g39175 Chara braunii HOM05D005214 ORTHO05D005861 3.7e-07 58.5 101 33.7
Nitab4.5_0000524g0010 Nicotiana tabacum HOM05D005214 ORTHO05D005861 3.7e-07 58.5 83 36.1
QL03p011667 Quercus lobata HOM05D005214 ORTHO05D005861 3.7e-07 58.5 98 39.8
SMO364G0425 Selaginella moellendorffii HOM05D005214 ORTHO05D005861 3.7e-07 58.5 96 40.6
AL6G39370 Arabidopsis lyrata HOM05D005214 ORTHO05D005861 4.8e-07 58.2 83 34.9
CSS0009954 Camellia sinensis var. sinensis HOM05D006716 ORTHO05D008396 4.8e-07 58.2 65 50.8
Ciclev10001167m.g Citrus clementina HOM05D005214 ORTHO05D005861 4.8e-07 58.2 83 38.6
COL.COLO4_10501 Corchorus olitorius HOM05D005214 ORTHO05D005861 4.8e-07 58.2 91 37.4
Nn8g40789 Nelumbo nucifera HOM05D005214 ORTHO05D005861 4.8e-07 58.2 98 38.8
Nitab4.5_0002144g0030 Nicotiana tabacum HOM05D005214 ORTHO05D005861 4.8e-07 58.2 83 36.1
Os11g0246600 Oryza sativa ssp. japonica HOM05D005214 ORTHO05D005861 4.8e-07 58.2 81 40.7
Thecc.05G311500 Theobroma cacao HOM05D005214 ORTHO05D005861 4.8e-07 58.2 82 37.8
Manes.08G119000 Manihot esculenta HOM05D005214 ORTHO05D005861 6.3e-07 57.8 83 36.1
SGA_v2.0_scaffold80G25806 Striga asiatica HOM05D005214 ORTHO05D005861 6.3e-07 57.8 80 40.0
TPR.G12759 Trifolium pratense HOM05D006716 ORTHO05D008396 6.3e-07 57.8 94 38.3
BcaNung04538 Brassica carinata HOM05D005214 ORTHO05D005861 8.3e-07 57.4 71 39.4
CARHR186180 Cardamine hirsuta HOM05D005214 ORTHO05D005861 8.3e-07 57.4 83 34.9
Cpa.g.sc48.81 Carica papaya HOM05D005214 ORTHO05D005861 8.3e-07 57.4 80 37.5
FvH4_6g06420 Fragaria vesca HOM05D005214 ORTHO05D005861 8.3e-07 57.4 80 38.8
Lsat_1_v5_gn_9_87421 Lactuca sativa HOM05D005214 ORTHO05D005861 8.3e-07 57.4 98 37.8
Aa31LG11G9400 Aethionema arabicum HOM05D005214 ORTHO05D005861 1.1e-06 57.0 95 33.7
Cc00_g10460 Coffea canephora HOM05D005214 ORTHO05D005861 1.1e-06 57.0 81 38.3
Eucgr.H04504 Eucalyptus grandis HOM05D005214 ORTHO05D005861 1.1e-06 57.0 83 37.3
HanXRQChr11g0339491 Helianthus annuus HOM05D005214 ORTHO05D005861 1.1e-06 57.0 98 38.8
vmacro04966 Vaccinium macrocarpon HOM05D005214 ORTHO05D005861 1.1e-06 57.0 80 38.8
ECA236G2130 Erigeron canadensis HOM05D005214 ORTHO05D005861 1.4e-06 56.6 98 38.8
Lj1g0009363 Lotus japonicus HOM05D005214 ORTHO05D005861 1.4e-06 56.6 94 39.4
PSO541G2582 Papaver somniferum HOM05D005214 ORTHO05D005861 1.4e-06 56.6 90 40.0
Dinv40313 Davidia involucrata HOM05D005214 ORTHO05D005861 1.8e-06 56.2 98 37.8
RcHm_v2.0_Chr3g0455481 Rosa chinensis HOM05D005214 ORTHO05D005861 2.4e-06 55.8 80 37.5
Aqoxy2G03015 Aquilegia oxysepala HOM05D005214 ORTHO05D005861 3.1e-06 55.5 98 33.7
FAN02G3954 Fragaria x ananassa HOM05D005214 ORTHO05D005861 3.1e-06 55.5 82 36.6
PSO675G4608 Papaver somniferum HOM05D005214 ORTHO05D005861 3.1e-06 55.5 90 36.7
Peaxi162Scf00849g00006 Petunia axillaris HOM05D005214 ORTHO05D005861 3.1e-06 55.5 87 37.9
A06p37390 Brassica napus HOM05D005214 ORTHO05D005861 4.1e-06 55.1 88 38.6
C07p40960 Brassica napus HOM05D005214 ORTHO05D005861 4.1e-06 55.1 88 38.6
BolC7t44627H Brassica oleracea HOM05D005214 ORTHO05D005861 4.1e-06 55.1 88 38.6
BraA06t26663Z Brassica rapa HOM05D005214 ORTHO05D005861 4.1e-06 55.1 88 38.6
FAN05G5708 Fragaria x ananassa HOM05D005214 ORTHO05D005861 4.1e-06 55.1 82 35.4
Hund07090 Selenicereus undatus HOM05D005214 ORTHO05D005861 4.1e-06 55.1 101 31.7
SGA_v2.0_scaffold237G43860 Striga asiatica HOM05D006716 ORTHO05D008396 4.1e-06 55.1 118 31.4
CANSAT54G2509 Cannabis sativa HOM05D005214 ORTHO05D005861 7.0e-06 54.3 98 32.7
CDE09G0722 Ceratophyllum demersum HOM05D005214 ORTHO05D005861 7.0e-06 54.3 101 33.7
EL10Ac4g09934 Beta vulgaris HOM05D005214 ORTHO05D005861 9.1e-06 53.9 101 32.7


User provided reference genes

Program Settings