Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 7.8e-67 257.3 160 100.0
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 2.4e-60 235.7 150 96.7
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 5.4e-60 234.6 150 96.7
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 6.2e-56 221.1 150 92.0
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 3.1e-55 218.8 149 87.9
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 4.0e-55 218.4 150 90.0
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 8.1e-48 194.1 150 82.7
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 7.8e-35 151.0 150 69.3
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.7e-34 149.8 149 58.4
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.7e-34 149.8 149 58.4
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 2.5e-33 146.0 147 61.2
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 5.6e-33 144.8 151 59.6
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 9.6e-33 144.1 152 57.2
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 1.3e-32 143.7 150 60.7
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 6.2e-32 141.4 146 58.9
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 4.0e-31 138.7 167 47.3
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 1.2e-30 137.1 149 61.1
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.0e-30 136.3 162 58.6
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 2.0e-30 136.3 162 58.6
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 5.8e-30 134.8 149 60.4
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 5.8e-30 134.8 150 61.3
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 7.6e-30 134.4 149 51.0
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 7.6e-30 134.4 149 51.0
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 1.3e-29 133.7 149 57.7
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 2.2e-29 132.9 148 58.8
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.9e-29 132.5 150 59.3
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.9e-29 132.5 162 56.8
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 4.9e-29 131.7 148 50.0
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 4.9e-29 131.7 150 60.0
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 6.4e-29 131.3 170 52.9
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 1.9e-28 129.8 138 52.2
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 7.1e-28 127.9 162 53.1
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 7.1e-28 127.9 136 52.2
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.2e-27 127.1 154 58.4
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.1e-27 126.3 148 57.4
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 2.7e-27 125.9 149 52.3
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 6.0e-27 124.8 157 53.5
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 7.9e-27 124.4 159 50.9
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 7.9e-27 124.4 159 50.9
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.3e-26 123.6 155 52.3
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 1.3e-26 123.6 168 54.8
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 3.0e-26 122.5 162 46.3
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.5e-25 120.2 149 59.1
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 1.5e-25 120.2 158 53.2
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 2.5e-25 119.4 163 51.5
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 3.3e-25 119.0 175 50.3
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 4.3e-25 118.6 160 53.1
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 4.3e-25 118.6 151 56.3
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 7.4e-25 117.9 159 52.2
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 7.4e-25 117.9 172 46.5
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 9.6e-25 117.5 154 50.6
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 9.6e-25 117.5 162 45.7
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 1.3e-24 117.1 163 52.8
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 1.3e-24 117.1 163 50.3
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.6e-24 116.7 168 45.2
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 1.6e-24 116.7 172 50.0
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 2.8e-24 115.9 152 53.3
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 3.7e-24 115.5 171 48.0
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 3.7e-24 115.5 162 43.2
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 4.8e-24 115.2 167 53.3
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 4.8e-24 115.2 159 47.2
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 8.1e-24 114.4 138 60.9
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.4e-23 113.6 159 50.3
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 1.4e-23 113.6 160 50.0
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.8e-23 113.2 134 61.9
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.8e-23 113.2 134 61.9
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 2.4e-23 112.8 165 57.0
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 2.4e-23 112.8 165 47.9
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 2.4e-23 112.8 149 45.0
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 3.1e-23 112.5 155 46.5
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 4.0e-23 112.1 159 52.8
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 6.9e-23 111.3 158 51.9
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 6.9e-23 111.3 160 56.2
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 1.2e-22 110.5 160 50.6
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.2e-22 110.5 160 50.6
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.2e-22 110.5 160 50.6
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 1.2e-22 110.5 160 50.6
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 1.5e-22 110.2 148 51.4
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.0e-22 109.8 173 50.3
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 2.0e-22 109.8 168 48.2
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 2.0e-22 109.8 181 45.9
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 2.0e-22 109.8 155 49.7
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 2.6e-22 109.4 163 40.5
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 2.6e-22 109.4 163 51.5
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 3.4e-22 109.0 177 49.2
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 3.4e-22 109.0 175 49.7
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 3.4e-22 109.0 150 55.3
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 5.8e-22 108.2 166 47.0
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 5.8e-22 108.2 172 49.4
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 7.6e-22 107.8 163 55.8
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 7.6e-22 107.8 167 49.7
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 7.6e-22 107.8 182 38.5
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 7.6e-22 107.8 159 51.6
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 1.3e-21 107.1 147 55.8
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 2.2e-21 106.3 148 50.0
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 2.9e-21 105.9 156 47.4
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 3.8e-21 105.5 162 48.1
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 6.4e-21 104.8 158 39.9
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 8.4e-21 104.4 156 59.6
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.1e-20 104.0 149 51.0
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 1.4e-20 103.6 159 52.2
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 1.9e-20 103.2 141 58.9
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 4.2e-20 102.1 157 39.5
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 4.2e-20 102.1 157 44.6
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 5.5e-20 101.7 155 50.3
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 7.1e-20 101.3 155 49.7
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 9.3e-20 100.9 157 51.0
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 9.3e-20 100.9 152 50.7
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 9.3e-20 100.9 158 48.7
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 2.1e-19 99.8 149 57.0
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 2.7e-19 99.4 164 40.9
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 2.7e-19 99.4 151 37.1
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 2.7e-19 99.4 141 59.6
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 1.8e-18 96.7 146 46.6
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 2.3e-18 96.3 152 46.7
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 5.1e-18 95.1 157 48.4
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 5.1e-18 95.1 144 53.5
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 6.7e-18 94.7 162 39.5
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.1e-17 94.0 157 44.6
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 1.9e-17 93.2 151 50.3
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 4.3e-17 92.0 141 47.5
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 9.6e-17 90.9 141 47.5
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 2.8e-16 89.4 148 51.4
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 6.2e-16 88.2 159 41.5
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 8.2e-16 87.8 168 35.7
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.8e-15 86.7 148 50.0
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 5.3e-15 85.1 162 37.0
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 1.5e-14 83.6 143 39.9
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 5.8e-14 81.6 161 36.6
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 1.0e-13 80.9 149 36.2
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 1.0e-13 80.9 150 45.3
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.2e-13 79.7 171 35.1
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 4.9e-13 78.6 158 37.3
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 3.2e-12 75.9 154 37.7
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 3.5e-11 72.4 98 60.2
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 7.9e-11 71.2 117 48.7
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 1.3e-10 70.5 147 37.4
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 1.3e-10 70.5 116 47.4
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 3.0e-10 69.3 145 37.2
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 3.9e-10 68.9 147 37.4
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.1e-09 67.4 162 34.0
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 1.9e-09 66.6 154 33.8
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 3.3e-09 65.9 170 31.2
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 4.3e-09 65.5 148 33.8
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 7.4e-09 64.7 145 37.2
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 7.4e-09 64.7 136 36.8
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 1.3e-08 63.9 154 33.1
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 1.3e-08 63.9 154 33.1
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 1.6e-08 63.5 158 46.8
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 3.7e-08 62.4 147 33.3
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 4.1e-07 58.9 138 34.1
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 2.0e-06 56.6 126 32.5
Carub.0008s2852 Capsella rubella HOM05D023070 ORTHO05D023654 2.0e-06 56.6 136 44.1
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 2.6e-06 56.2 143 36.4
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 2.6e-06 56.2 143 36.4
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 4.5e-06 55.5 40 62.5


User provided reference genes

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