Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 1.1e-177 626.7 358 100.0
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 8.6e-175 617.1 358 99.4
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 5.8e-155 551.2 342 91.2
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 2.0e-110 403.3 363 71.1
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.7e-106 390.2 342 69.3
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 5.7e-102 375.2 341 66.9
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 1.0e-82 311.2 343 58.9
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 3.1e-71 273.1 365 49.3
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 1.5e-70 270.8 356 51.7
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 2.8e-64 250.0 343 54.5
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 3.6e-64 249.6 338 49.7
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 2.0e-62 243.8 356 50.3
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 2.6e-62 243.4 346 50.6
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 2.6e-62 243.4 346 50.6
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 2.6e-62 243.4 346 46.8
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 3.2e-60 236.5 346 47.7
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 4.2e-60 236.1 355 45.9
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 1.2e-59 234.6 356 46.3
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 2.1e-59 233.8 346 47.4
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 1.0e-58 231.5 357 47.9
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 1.0e-58 231.5 364 47.3
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.0e-58 231.5 364 47.3
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 3.9e-58 229.6 352 45.7
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 6.6e-58 228.8 366 48.9
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 8.7e-58 228.4 349 47.0
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 8.7e-58 228.4 352 44.9
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 8.7e-58 228.4 352 44.9
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.5e-57 227.6 364 44.8
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 2.5e-57 226.9 351 47.3
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 4.3e-57 226.1 364 44.5
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 5.6e-57 225.7 364 44.5
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 7.3e-57 225.3 365 44.4
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 9.6e-57 224.9 353 47.6
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 1.2e-56 224.6 351 47.0
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 2.1e-56 223.8 364 45.9
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 2.1e-56 223.8 344 50.3
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 2.1e-56 223.8 336 46.7
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 2.8e-56 223.4 368 45.1
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 2.8e-56 223.4 368 47.0
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 2.8e-56 223.4 368 47.0
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 3.6e-56 223.0 366 47.5
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 4.7e-56 222.6 364 46.2
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 4.7e-56 222.6 359 46.5
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 8.1e-56 221.9 368 45.9
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 1.4e-55 221.1 349 48.7
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 2.4e-55 220.3 362 43.1
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 5.2e-55 219.2 365 44.1
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 1.5e-54 217.6 369 44.2
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 2.0e-54 217.2 368 47.0
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 3.4e-54 216.5 336 44.9
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 4.4e-54 216.1 375 45.3
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 9.9e-54 214.9 350 45.4
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 9.9e-54 214.9 338 49.1
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 1.3e-53 214.5 340 44.1
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 3.8e-53 213.0 377 41.4
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 4.9e-53 212.6 372 45.4
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 1.1e-52 211.5 343 44.6
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 1.4e-52 211.1 368 44.0
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 1.4e-52 211.1 363 46.8
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 1.9e-52 210.7 364 45.1
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 3.2e-52 209.9 368 45.7
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 3.2e-52 209.9 368 44.8
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 4.2e-52 209.5 362 41.7
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 5.4e-52 209.1 345 47.8
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 7.1e-52 208.8 337 43.3
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 9.3e-52 208.4 368 43.5
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 9.3e-52 208.4 350 46.0
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.2e-51 208.0 346 48.3
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.6e-51 207.6 364 46.4
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 2.7e-51 206.8 343 46.9
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 7.8e-51 205.3 344 44.8
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 7.8e-51 205.3 352 46.3
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 7.8e-51 205.3 352 46.3
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 1.3e-50 204.5 344 42.2
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 1.3e-50 204.5 372 43.5
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 3.9e-50 203.0 339 42.5
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 3.9e-50 203.0 369 43.1
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 3.9e-50 203.0 337 43.3
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 6.6e-50 202.2 338 42.6
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 8.7e-50 201.8 336 42.6
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 2.5e-49 200.3 361 47.1
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 2.1e-48 197.2 372 44.4
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 6.2e-48 195.7 325 42.8
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 6.2e-48 195.7 325 42.8
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 1.1e-47 194.9 324 42.9
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 1.4e-47 194.5 342 42.7
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 3.1e-47 193.4 342 42.4
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 3.1e-47 193.4 372 43.5
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 4.0e-47 193.0 374 42.2
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 9.0e-47 191.8 363 42.4
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 1.5e-46 191.0 370 42.4
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 2.6e-46 190.3 347 40.9
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 2.6e-46 190.3 342 40.1
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 2.6e-46 190.3 327 42.5
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 3.4e-46 189.9 347 43.2
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 9.9e-46 188.3 371 41.8
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 1.3e-45 188.0 364 39.6
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 2.2e-45 187.2 365 39.5
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 2.2e-45 187.2 365 39.5
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 2.9e-45 186.8 342 47.7
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.1e-44 184.9 355 40.8
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 3.2e-44 183.3 321 45.5
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 3.2e-44 183.3 365 38.9
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 5.4e-44 182.6 345 43.8
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 2.7e-43 180.3 342 43.0
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 1.0e-42 178.3 374 41.4
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 1.9e-41 174.1 313 39.3
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 7.4e-41 172.2 401 37.9
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 1.6e-40 171.0 365 42.7
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 8.4e-37 158.7 341 40.8
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 1.6e-35 154.5 362 37.8
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 3.0e-34 150.2 397 35.0
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 1.1e-33 148.3 364 35.2
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 2.5e-33 147.1 307 36.5
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 8.2e-32 142.1 295 45.1
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 2.6e-30 137.1 272 42.6
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 4.2e-28 129.8 352 33.5
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 4.2e-28 129.8 350 35.1
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 3.5e-27 126.7 260 40.8
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.3e-26 124.8 130 56.2
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 6.7e-26 122.5 358 33.8
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 9.7e-25 118.6 328 33.8
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 9.7e-25 118.6 313 34.8
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 1.3e-24 118.2 209 43.5
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 1.6e-24 117.9 358 33.8
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 4.8e-24 116.3 275 38.9
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 5.9e-22 109.4 290 33.4
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 7.7e-22 109.0 195 41.0
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 2.5e-20 104.0 97 56.7
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 4.2e-20 103.2 365 30.7
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 2.7e-19 100.5 313 34.2
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 6.1e-19 99.4 158 43.0
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.1e-17 95.1 99 56.6
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 4.8e-16 89.7 181 37.6
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 4.8e-16 89.7 321 30.2
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.5e-14 84.7 194 44.8
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 6.5e-13 79.3 330 33.0
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 8.5e-13 79.0 427 26.7
Nitab4.5_0000047g0240 Nicotiana tabacum HOM05D004638 ORTHO05D005443 5.1e-10 69.7 89 48.3
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 1.1e-09 68.6 122 40.2
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 2.0e-09 67.8 135 39.3
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.8e-07 61.2 106 40.6
Nitab4.5_0000047g0230 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.8e-07 61.2 94 43.6
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 2.0e-06 57.8 342 24.9
Nitab4.5_0000047g0210 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.6e-06 57.4 181 40.9


User provided reference genes

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