Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g082100.4 Solanum lycopersicum HOM05D001163 ORTHO05D006243 0.0e+00 1110.1 587 100.0
Sopen02g026760 Solanum pennellii HOM05D001163 ORTHO05D006243 2.6e-269 931.8 535 95.3
PGSC0003DMG401013630 Solanum tuberosum HOM05D001163 ORTHO05D006243 5.1e-249 864.4 549 86.7
Nitab4.5_0000614g0040 Nicotiana tabacum HOM05D001163 ORTHO05D006243 1.7e-180 636.7 629 64.5
Nitab4.5_0001815g0030 Nicotiana tabacum HOM05D001163 ORTHO05D006243 4.3e-179 632.1 634 64.8
Peaxi162Scf00036g00414 Petunia axillaris HOM05D001163 ORTHO05D006243 3.2e-166 589.3 626 62.3
Nitab4.5_0001299g0060 Nicotiana tabacum HOM05D001163 ORTHO05D006243 9.1e-81 305.4 537 42.5
Peaxi162Scf00203g00142 Petunia axillaris HOM05D001163 ORTHO05D006243 3.5e-80 303.5 555 42.7
Nitab4.5_0004786g0060 Nicotiana tabacum HOM05D001163 ORTHO05D006243 1.4e-68 265.0 537 38.9
PGSC0003DMG400011288 Solanum tuberosum HOM05D001163 ORTHO05D006243 4.4e-67 260.0 548 40.7
Sopen10g001210 Solanum pennellii HOM05D001163 ORTHO05D006243 1.1e-62 245.4 547 38.9
Solyc10g005220.3 Solanum lycopersicum HOM05D001163 ORTHO05D006243 7.3e-62 242.7 539 39.3
Cc09_g04670 Coffea canephora HOM05D001163 ORTHO05D006243 9.8e-59 232.3 400 44.5
Oeu052924.1 Olea europaea HOM05D001163 ORTHO05D006243 3.6e-53 213.8 476 39.7
CSS0048305 Camellia sinensis var. sinensis HOM05D001163 ORTHO05D006243 3.1e-44 184.1 380 38.9
Rhsim13G0135800 Rhododendron simsii HOM05D001163 ORTHO05D006243 6.4e-42 176.4 435 36.8
Lj1A1151T86 Lonicera japonica HOM05D001163 ORTHO05D006243 1.8e-36 158.3 428 36.0
Atru.chr10.243 Acer truncatum HOM05D001163 ORTHO05D006243 3.4e-35 154.1 517 33.5
Dinv17882 Davidia involucrata HOM05D001163 ORTHO05D006243 1.2e-32 145.6 423 36.4
CANSAT35G1654 Cannabis sativa HOM05D001163 ORTHO05D006243 6.0e-32 143.3 444 32.7
Cfa001158 Carpinus fangiana HOM05D001163 ORTHO05D006243 1.0e-31 142.5 570 29.6
Prupe.4G120300 Prunus persica HOM05D001163 ORTHO05D006243 1.0e-31 142.5 535 30.7
Duzib132G0266 Durio zibethinus HOM05D001163 ORTHO05D006243 6.6e-31 139.8 448 32.8
MD10G1225200 Malus domestica HOM05D001163 ORTHO05D006243 1.5e-30 138.7 535 29.3
MSTRG.7611 Avicennia marina HOM05D001163 ORTHO05D006243 4.3e-30 137.1 499 31.7
COL.COLO4_25029 Corchorus olitorius HOM05D001163 ORTHO05D006243 5.6e-30 136.7 528 28.4
CiPaw.09G140200 Carya illinoinensis HOM05D001163 ORTHO05D006243 1.3e-29 135.6 547 31.4
Gohir.D02G240300 Gossypium hirsutum HOM05D001163 ORTHO05D006243 1.8e-28 131.7 495 31.5
SGA_v2.0_scaffold423G51455 Striga asiatica HOM05D001163 ORTHO05D006243 5.3e-28 130.2 441 32.2
TWI38G0101 Tripterygium wilfordii HOM05D001163 ORTHO05D006243 5.3e-28 130.2 440 31.4
TAR626G1817 Trochodendron aralioides HOM05D001163 ORTHO05D001769 6.9e-28 129.8 514 30.5
TWI63G1213 Tripterygium wilfordii HOM05D001163 ORTHO05D006243 9.0e-28 129.4 425 32.7
Cpa.g.c27631.2 Carica papaya HOM05D001163 ORTHO05D006243 1.2e-27 129.0 476 30.5
Hma1.2p1_0082F.1_g042580 Hydrangea macrophylla HOM05D001163 ORTHO05D006243 5.8e-27 126.7 521 31.7
Lj6g0024369 Lotus japonicus HOM05D001163 ORTHO05D006243 7.6e-27 126.3 552 29.9
Dinv18039 Davidia involucrata HOM05D001163 ORTHO05D006243 8.4e-26 122.9 524 31.5
Potri.003G156400 Populus trichocarpa HOM05D001163 ORTHO05D006243 1.9e-25 121.7 527 30.4
RcHm_v2.0_Chr5g0021761 Rosa chinensis HOM05D001163 ORTHO05D006243 1.9e-25 121.7 521 31.9
Thecc.02G001500 Theobroma cacao HOM05D001163 ORTHO05D006243 2.4e-25 121.3 541 30.5
PGR042G0834 Punica granatum HOM05D001163 ORTHO05D006243 7.1e-25 119.8 517 30.9
Sc17g0004310 Simmondsia chinensis HOM05D001163 ORTHO05D006243 1.2e-24 119.0 438 31.1
Gohir.D12G049100 Gossypium hirsutum HOM05D001163 ORTHO05D006243 1.6e-24 118.6 539 28.9
Sabra01G0052900 Salix brachista HOM05D001163 ORTHO05D006243 1.6e-24 118.6 504 29.6
Potri.001G074800 Populus trichocarpa HOM05D001163 ORTHO05D006243 2.1e-24 118.2 598 27.8
Gorai.005G268800 Gossypium raimondii HOM05D001163 ORTHO05D006243 3.5e-24 117.5 494 30.6
Gorai.008G052000 Gossypium raimondii HOM05D001163 ORTHO05D006243 3.5e-24 117.5 537 28.7
QL11p010904 Quercus lobata HOM05D001163 ORTHO05D006243 3.5e-24 117.5 418 31.1
Sabra03G0113400 Salix brachista HOM05D001163 ORTHO05D006243 3.5e-24 117.5 527 29.8
Manes.03G072400 Manihot esculenta HOM05D001163 ORTHO05D006243 4.6e-24 117.1 537 29.4
Ciclev10014128m.g Citrus clementina HOM05D001163 ORTHO05D006243 1.0e-23 115.9 557 30.5
DCAR_004358 Daucus carota HOM05D001163 ORTHO05D006243 1.3e-23 115.5 415 31.3
Manes.16G058900 Manihot esculenta HOM05D001163 ORTHO05D006243 3.9e-23 114.0 512 30.5
Nn7g38417 Nelumbo nucifera HOM05D001163 ORTHO05D001769 5.1e-23 113.6 585 28.5
Glyma.15G155500 Glycine max HOM05D001163 ORTHO05D006243 6.7e-23 113.2 536 31.2
Lalb_Chr15g0083671 Lupinus albus HOM05D001163 ORTHO05D006243 1.1e-22 112.5 550 27.8
MD05G1243100 Malus domestica HOM05D001163 ORTHO05D006243 1.1e-22 112.5 488 27.5
Gohir.A12G050800 Gossypium hirsutum HOM05D001163 ORTHO05D006243 3.3e-22 110.9 547 27.1
THA.LOC104814327 Tarenaya hassleriana HOM05D001163 ORTHO05D006243 7.4e-22 109.8 467 29.1
Thhalv10006896m.g Eutrema salsugineum HOM05D001163 ORTHO05D006243 6.2e-21 106.7 436 30.7
Psat1g151440 Pisum sativum HOM05D001163 ORTHO05D006243 6.2e-21 106.7 564 28.9
DCAR_007772 Daucus carota HOM05D002112 ORTHO05D005830 1.1e-20 105.9 458 28.4
Aqoxy1G01366 Aquilegia oxysepala HOM05D001163 ORTHO05D001769 1.8e-20 105.1 430 28.1
HanXRQChr14g0439011 Helianthus annuus HOM05D001163 ORTHO05D006243 1.8e-20 105.1 296 32.8
Ca_02402_v3 Cicer arietinum L. HOM05D001163 ORTHO05D006243 2.4e-20 104.8 592 27.7
Migut.M02031 Erythranthe guttata HOM05D001163 ORTHO05D006243 5.3e-20 103.6 452 31.6
Lalb_Chr18g0051941 Lupinus albus HOM05D001163 ORTHO05D006243 6.9e-20 103.2 471 29.1
VMungo1309G2226 Vigna mungo HOM05D001163 ORTHO05D006243 1.5e-19 102.1 553 28.2
ClCG01G025930 Citrullus lanatus HOM05D001163 ORTHO05D006243 7.6e-19 99.8 437 30.4
GSVIVG01010075001 Vitis vinifera HOM05D001163 ORTHO05D006243 1.3e-18 99.0 402 32.6
arahy.Tifrunner.gnm1.ann1.X5K9YD Arachis hypogaea HOM05D001163 ORTHO05D006243 1.7e-18 98.6 572 26.6
TAR624G0505 Trochodendron aralioides HOM05D001163 ORTHO05D006243 6.4e-18 96.7 477 27.7
BcaB04g18202 Brassica carinata HOM05D001163 ORTHO05D006243 2.4e-17 94.7 319 32.0
Ca_18216_v3 Cicer arietinum L. HOM05D001163 ORTHO05D006243 2.4e-17 94.7 394 30.2
CsaV3_6G053140 Cucumis sativus L. HOM05D001163 ORTHO05D006243 2.4e-17 94.7 409 29.8
MELO3C006998.2 Cucumis melo HOM05D001163 ORTHO05D006243 3.2e-17 94.4 438 29.5
Lsat_1_v5_gn_2_59740 Lactuca sativa HOM05D001163 ORTHO05D006243 3.2e-17 94.4 396 31.1
Glyma.09G048200 Glycine max HOM05D001163 ORTHO05D006243 4.2e-17 94.0 567 28.6
Sp4g17220 Schrenkiella parvula HOM05D001163 ORTHO05D006243 7.1e-17 93.2 529 27.6
Lalb_Chr13g0293051 Lupinus albus HOM05D001163 ORTHO05D006243 9.3e-17 92.8 457 30.0
HanXRQChr16g0520861 Helianthus annuus HOM05D001163 ORTHO05D006243 1.2e-16 92.4 320 30.3
Medtr2g437720 Medicago truncatula HOM05D001163 ORTHO05D006243 1.2e-16 92.4 526 29.5
Thhalv10016344m.g Eutrema salsugineum HOM05D001163 ORTHO05D006243 1.6e-16 92.0 533 26.5
Sp1g26760 Schrenkiella parvula HOM05D001163 ORTHO05D006243 1.6e-16 92.0 288 32.3
MBI18_g30008_MAGBIO Magnolia biondii HOM05D001163 ORTHO05D001769 2.1e-16 91.7 422 28.0
Medtr4g094795 Medicago truncatula HOM05D001163 ORTHO05D006243 3.5e-16 90.9 450 30.4
A08p10930 Brassica napus HOM05D001163 ORTHO05D006243 6.0e-16 90.1 322 27.3
PSO541G6062 Papaver somniferum HOM05D001163 ORTHO05D006243 6.0e-16 90.1 518 27.6
AL1G45150 Arabidopsis lyrata HOM05D001163 ORTHO05D006243 1.0e-15 89.4 298 32.9
FvH4_3g13290 Fragaria vesca HOM05D001163 ORTHO05D006243 1.0e-15 89.4 568 27.1
PSO675G5192 Papaver somniferum HOM05D001163 ORTHO05D006243 1.8e-15 88.6 515 27.8
Carub.0001s2920 Capsella rubella HOM05D001163 ORTHO05D006243 3.0e-15 87.8 374 27.3
FAN21G1127 Fragaria x ananassa HOM05D001163 ORTHO05D006243 3.0e-15 87.8 572 27.3
Phvul.009G244700 Phaseolus vulgaris HOM05D001163 ORTHO05D006243 3.0e-15 87.8 537 29.4
Psat7g087000 Pisum sativum HOM05D001163 ORTHO05D006243 3.0e-15 87.8 275 34.5
ECA238G3617 Erigeron canadensis HOM05D001163 ORTHO05D006243 8.7e-15 86.3 331 30.2
SalBow8G5620 Salvia bowleyana HOM05D001163 ORTHO05D006243 8.7e-15 86.3 387 30.0
BcaC07g37799 Brassica carinata HOM05D001163 ORTHO05D006243 1.1e-14 85.9 457 27.1
BolC8t48190H Brassica oleracea HOM05D001163 ORTHO05D006243 1.1e-14 85.9 457 27.1
BraA08t33090Z Brassica rapa HOM05D001163 ORTHO05D006243 1.1e-14 85.9 329 27.4
Aa31LG6G12280 Aethionema arabicum HOM05D001163 ORTHO05D006243 1.5e-14 85.5 502 30.3
FAN16G0054 Fragaria x ananassa HOM05D001163 ORTHO05D006243 1.5e-14 85.5 588 26.5
AT1G30860 Arabidopsis thaliana HOM05D001163 ORTHO05D006243 1.9e-14 85.1 234 32.5
Lj4g0005018 Lotus japonicus HOM05D001163 ORTHO05D006243 3.3e-14 84.3 524 27.3
BcaC05g27124 Brassica carinata HOM05D001163 ORTHO05D006243 4.3e-14 84.0 422 27.3
C05p30090 Brassica napus HOM05D001163 ORTHO05D006243 4.3e-14 84.0 422 27.3
BolC5t31745H Brassica oleracea HOM05D001163 ORTHO05D006243 4.3e-14 84.0 423 26.7
FAN11G3010 Fragaria x ananassa HOM05D001163 ORTHO05D006243 4.3e-14 84.0 568 26.8
TPR.G30936 Trifolium pratense HOM05D001163 ORTHO05D006243 5.6e-14 83.6 590 28.0
CARHR030350 Cardamine hirsuta HOM05D001163 ORTHO05D006243 1.3e-13 82.4 225 32.4
Nn4g26669 Nelumbo nucifera HOM05D001163 ORTHO05D001769 1.3e-13 82.4 470 26.0
A09p35290 Brassica napus HOM05D001163 ORTHO05D006243 3.7e-13 80.9 408 29.4
Thhalv10024247m.g Eutrema salsugineum HOM05D001163 ORTHO05D014764 3.7e-13 80.9 468 25.6
FAN25G3497 Fragaria x ananassa HOM05D001163 ORTHO05D006243 1.4e-12 79.0 583 25.7
CARHR129070 Cardamine hirsuta HOM05D001163 ORTHO05D006243 4.0e-12 77.4 430 27.7
arahy.Tifrunner.gnm1.ann1.XP2BFV Arachis hypogaea HOM05D001163 ORTHO05D006243 5.3e-12 77.0 540 25.9
BcaB07g32752 Brassica carinata HOM05D001163 ORTHO05D006243 5.3e-12 77.0 356 28.1
BraA09t39058Z Brassica rapa HOM05D001163 ORTHO05D006243 9.0e-12 76.3 354 28.0
BolC4t27883H Brassica oleracea HOM05D001163 ORTHO05D006243 1.5e-11 75.5 296 28.0
Sed0018505 Sechium edule HOM05D001163 ORTHO05D006243 2.0e-11 75.1 401 27.7
AT4G20160 Arabidopsis thaliana HOM05D001163 ORTHO05D014764 3.4e-11 74.3 520 26.3
A04p26650 Brassica napus HOM05D001163 ORTHO05D006243 4.5e-11 73.9 230 32.6
C04p64070 Brassica napus HOM05D001163 ORTHO05D006243 4.5e-11 73.9 230 32.6
arahy.Tifrunner.gnm1.ann1.63SYA1 Arachis hypogaea HOM05D001163 ORTHO05D006243 1.0e-10 72.8 251 30.7
ECA232G1323 Erigeron canadensis HOM05D001163 ORTHO05D006243 1.0e-10 72.8 348 27.6
THA.LOC104811913 Tarenaya hassleriana HOM05D001163 ORTHO05D006243 1.3e-10 72.4 542 25.8
BcaB02g09498 Brassica carinata HOM05D001163 ORTHO05D006243 6.5e-10 70.1 198 31.3
AL4G30930 Arabidopsis lyrata HOM05D001163 ORTHO05D006243 8.4e-10 69.7 395 27.6
AT2G34920 Arabidopsis thaliana HOM05D001163 ORTHO05D006243 8.4e-10 69.7 395 28.1
Carub.0007s2097 Capsella rubella HOM05D001163 ORTHO05D014764 8.4e-10 69.7 522 26.1
Lsat_1_v5_gn_8_107201 Lactuca sativa HOM05D001163 ORTHO05D006243 8.4e-10 69.7 108 38.9
Carub.0004s1660 Capsella rubella HOM05D001163 ORTHO05D006243 1.9e-09 68.6 303 29.0
Haze_05193 Corylus avellana HOM05D001163 ORTHO05D006243 1.9e-09 68.6 561 26.0
arahy.Tifrunner.gnm1.ann1.M3VXN8 Arachis hypogaea HOM05D001163 ORTHO05D006243 3.2e-09 67.8 236 30.9
CARHR226990 Cardamine hirsuta HOM05D001163 ORTHO05D014764 5.5e-09 67.0 498 25.9
TPR.G27394 Trifolium pratense HOM05D001163 ORTHO05D006243 7.1e-09 66.6 419 27.9
BraA04t18170Z Brassica rapa HOM05D001163 ORTHO05D006243 1.6e-08 65.5 230 31.7
MBI02_g17881_MAGBIO Magnolia biondii HOM05D001163 ORTHO05D001769 1.6e-08 65.5 440 24.5
A01p11910 Brassica napus HOM05D001163 ORTHO05D014764 2.1e-08 65.1 286 29.4
Gohir.A03G218400 Gossypium hirsutum HOM05D001163 ORTHO05D006243 2.1e-08 65.1 509 24.0
BcaC02g07748 Brassica carinata HOM05D001163 ORTHO05D006243 3.5e-08 64.3 296 27.0
Lj5g0003206 Lotus japonicus HOM05D001163 ORTHO05D001769 3.5e-08 64.3 136 37.5
A05p10760 Brassica napus HOM05D001163 ORTHO05D006243 1.3e-07 62.4 367 26.7
SalBow4G1952 Salvia bowleyana HOM05D001163 ORTHO05D001769 1.3e-07 62.4 159 32.7
Ah.08g212290 Amaranthus hybridus HOM05D001163 ORTHO05D006243 3.0e-07 61.2 517 24.6
BcaB06g28823 Brassica carinata HOM05D001163 ORTHO05D006243 3.0e-07 61.2 224 29.9
Medtr1g090803 Medicago truncatula HOM05D001163 ORTHO05D001769 3.0e-07 61.2 159 34.6
Sp7g18590 Schrenkiella parvula HOM05D001163 ORTHO05D014764 3.9e-07 60.8 509 25.7
BraA05t20020Z Brassica rapa HOM05D001163 ORTHO05D006243 5.1e-07 60.5 371 27.0
C04p13870 Brassica napus HOM05D001163 ORTHO05D006243 6.7e-07 60.1 379 24.8
Lalb_Chr02g0151121 Lupinus albus HOM05D001163 ORTHO05D001769 6.7e-07 60.1 207 29.5
AT5G04460 Arabidopsis thaliana HOM05D001163 ORTHO05D001769 8.7e-07 59.7 169 31.4
HanXRQChr14g0456141 Helianthus annuus HOM05D001163 ORTHO05D001769 1.1e-06 59.3 92 40.2
Nn6g35186 Nelumbo nucifera HOM05D001163 ORTHO05D001769 1.1e-06 59.3 209 27.8
BcaB06g28820 Brassica carinata HOM05D001163 ORTHO05D006243 1.5e-06 58.9 322 26.1
SGA_v2.0_scaffold41G15750 Striga asiatica HOM05D001163 ORTHO05D001769 1.5e-06 58.9 233 28.8
Lalb_Chr21g0313071 Lupinus albus HOM05D001163 ORTHO05D001769 1.9e-06 58.5 220 30.9
AL6G14090 Arabidopsis lyrata HOM05D001163 ORTHO05D001769 2.5e-06 58.2 145 36.6
BolC4t22975H Brassica oleracea HOM05D001163 ORTHO05D006243 2.5e-06 58.2 379 24.8
Gohir.A01G129400 Gossypium hirsutum HOM05D001163 ORTHO05D001769 2.5e-06 58.2 183 31.1
FAN10G3476 Fragaria x ananassa HOM05D001163 ORTHO05D001769 3.3e-06 57.8 90 40.0
Sp3g08780 Schrenkiella parvula HOM05D001163 ORTHO05D001769 3.3e-06 57.8 175 31.4
MSTRG.401 Avicennia marina HOM05D001163 ORTHO05D001769 4.3e-06 57.4 122 36.9
EL10Ac4g08632 Beta vulgaris HOM05D001163 ORTHO05D001769 4.3e-06 57.4 212 28.3
TAR623G0804 Trochodendron aralioides HOM05D001163 ORTHO05D001769 4.3e-06 57.4 121 38.0
BolC1t05390H Brassica oleracea HOM05D001163 ORTHO05D001769 5.7e-06 57.0 114 39.5
TAR633G2218 Trochodendron aralioides HOM05D001163 ORTHO05D001769 5.7e-06 57.0 109 37.6
ClCG05G021440 Citrullus lanatus HOM05D001163 ORTHO05D001769 7.4e-06 56.6 90 40.0
MELO3C012383.2 Cucumis melo HOM05D001163 ORTHO05D001769 7.4e-06 56.6 90 40.0
CsaV3_5G035810 Cucumis sativus L. HOM05D001163 ORTHO05D001769 7.4e-06 56.6 90 40.0
MD02G1237400 Malus domestica HOM05D001163 ORTHO05D001769 7.4e-06 56.6 167 31.7
Aqoxy1G01048 Aquilegia oxysepala HOM05D001163 ORTHO05D001769 9.7e-06 56.2 176 32.4
BolC1t01379H Brassica oleracea HOM05D001163 ORTHO05D014764 9.7e-06 56.2 342 28.1
FvH4_7g06660 Fragaria vesca HOM05D001163 ORTHO05D001769 9.7e-06 56.2 90 40.0
FAN06G1746 Fragaria x ananassa HOM05D001163 ORTHO05D001769 9.7e-06 56.2 90 40.0
Sed0018777 Sechium edule HOM05D001163 ORTHO05D001769 9.7e-06 56.2 100 39.0


User provided reference genes

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