Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 1.9e-256 888.6 448 100.0
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 1.4e-254 882.5 448 99.1
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 6.6e-249 863.6 448 97.3
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 1.5e-237 825.9 451 92.5
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 3.5e-226 788.1 451 90.0
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 3.9e-225 784.6 449 90.2
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 1.2e-221 773.1 452 87.6
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 4.0e-193 678.3 441 78.5
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 8.8e-193 677.2 441 78.5
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 2.8e-191 672.2 453 77.3
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 1.6e-186 656.4 455 74.7
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 1.8e-182 642.9 455 74.3
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 1.6e-181 639.8 450 72.4
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 4.5e-181 638.3 454 74.0
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 7.7e-181 637.5 454 72.0
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 4.2e-179 631.7 442 73.1
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 9.5e-179 630.6 534 63.5
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 1.2e-178 630.2 450 72.2
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 1.2e-178 630.2 485 66.8
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.6e-178 629.8 455 71.0
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 1.0e-177 627.1 456 71.3
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 3.0e-177 625.5 436 73.4
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 2.0e-176 622.9 454 69.6
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 2.6e-176 622.5 461 69.4
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 1.7e-175 619.8 463 69.3
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.4e-174 615.9 440 71.6
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 3.1e-174 615.5 455 70.3
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 4.1e-174 615.1 455 70.1
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 5.4e-174 614.8 455 70.1
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 9.2e-174 614.0 445 71.5
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 1.0e-172 610.5 456 68.2
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 1.7e-172 609.8 454 70.5
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 2.9e-172 609.0 449 68.8
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 5.0e-172 608.2 448 69.6
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 5.0e-172 608.2 452 68.6
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 6.6e-172 607.8 445 69.4
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 7.3e-171 604.4 449 68.8
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 1.2e-170 603.6 455 69.7
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.4e-169 600.1 451 67.6
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 3.1e-169 599.0 426 73.5
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 8.9e-169 597.4 458 66.8
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.5e-168 596.7 453 66.4
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 2.0e-168 596.3 449 69.0
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 2.0e-168 596.3 450 68.2
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.3e-167 593.6 446 67.3
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 1.7e-167 593.2 451 68.3
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 3.7e-167 592.0 426 73.5
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 4.9e-167 591.7 451 68.7
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 4.9e-167 591.7 456 67.5
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 1.4e-166 590.1 451 67.4
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 7.0e-166 587.8 450 66.0
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 6.0e-165 584.7 458 65.9
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 1.7e-164 583.2 461 65.7
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 2.3e-164 582.8 455 66.8
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 3.9e-164 582.0 471 63.9
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 3.9e-164 582.0 458 65.7
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 6.6e-164 581.3 451 66.7
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 8.6e-164 580.9 435 69.7
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 1.1e-163 580.5 451 66.7
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 1.5e-163 580.1 451 68.7
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 3.3e-163 578.9 444 67.6
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 3.3e-163 578.9 454 66.5
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 4.3e-163 578.6 448 66.1
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 9.5e-163 577.4 448 65.4
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.2e-162 577.0 458 65.7
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 1.6e-162 576.6 448 65.2
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 1.6e-162 576.6 458 65.5
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 2.1e-162 576.2 450 66.0
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 3.6e-162 575.5 448 65.0
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 8.0e-162 574.3 448 66.1
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 8.0e-162 574.3 448 64.7
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.1e-161 573.9 458 65.3
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.8e-161 573.2 452 65.0
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 3.1e-161 572.4 451 65.6
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 3.1e-161 572.4 453 64.9
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 5.2e-161 571.6 452 65.7
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 5.2e-161 571.6 448 66.5
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 6.8e-161 571.2 452 65.5
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 6.8e-161 571.2 452 65.5
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 6.8e-161 571.2 465 64.9
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 1.2e-160 570.5 449 65.0
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 2.0e-160 569.7 448 67.6
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 4.4e-160 568.5 454 66.1
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 9.8e-160 567.4 455 65.9
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 9.8e-160 567.4 455 65.7
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 1.7e-159 566.6 454 66.7
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 2.2e-159 566.2 434 68.7
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 6.4e-159 564.7 449 64.6
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 6.4e-159 564.7 449 66.4
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 6.4e-159 564.7 476 63.4
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 8.3e-159 564.3 451 65.6
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 8.3e-159 564.3 452 65.7
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 3.2e-158 562.4 451 63.4
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 3.2e-158 562.4 514 59.7
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 5.4e-158 561.6 447 66.9
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 1.6e-157 560.1 472 64.0
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 1.6e-157 560.1 454 65.9
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 2.1e-157 559.7 451 65.4
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 4.6e-157 558.5 471 63.3
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 7.8e-157 557.8 449 65.9
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 7.8e-157 557.8 451 62.7
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 7.8e-157 557.8 449 65.0
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 5.1e-156 555.1 477 62.9
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 6.6e-156 554.7 451 64.7
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 6.6e-156 554.7 449 65.7
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.5e-155 553.5 448 66.5
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 1.9e-155 553.1 447 65.5
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 7.3e-155 551.2 450 66.2
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 1.6e-154 550.1 446 65.5
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 1.6e-154 550.1 449 62.8
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 1.2e-152 543.9 484 59.7
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 3.7e-151 538.9 450 64.0
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 6.4e-151 538.1 421 68.4
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 1.1e-150 537.3 447 64.9
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 2.3e-148 529.6 446 63.0
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 6.6e-148 528.1 418 67.0
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 1.5e-147 526.9 453 63.1
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 1.9e-147 526.6 403 68.0
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 9.5e-147 524.2 415 66.7
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 7.6e-144 514.6 458 62.0
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 8.4e-143 511.1 428 63.3
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 2.3e-140 503.1 429 62.5
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 5.6e-139 498.4 444 60.1
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.6e-138 496.9 425 60.9
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 3.8e-135 485.7 392 67.1
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 8.7e-132 474.6 447 58.6
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 4.0e-129 465.7 511 55.2
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 6.0e-125 451.8 390 60.8
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 2.5e-123 446.4 453 55.8
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.6e-122 443.7 428 54.9
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.3e-116 423.3 273 80.2
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 3.9e-116 422.5 297 72.4
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 4.3e-115 419.1 337 65.3
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 3.2e-110 402.9 470 49.1
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 6.0e-109 398.7 322 65.5
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 1.8e-108 397.1 450 49.8
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 7.4e-107 391.7 450 50.2
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.8e-97 360.5 461 47.3
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.5e-96 357.5 317 62.8
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 3.8e-87 326.2 191 84.8
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 7.2e-86 322.0 317 56.5
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.7e-82 310.8 443 44.7
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 1.5e-75 287.7 193 71.5
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 3.4e-75 286.6 191 73.3
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 2.9e-71 273.5 296 51.4
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 3.8e-71 273.1 236 64.0
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 1.1e-70 271.6 216 66.2
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 2.7e-69 266.9 286 51.4
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 4.0e-68 263.1 521 36.9
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 7.7e-64 248.8 199 65.8
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 4.2e-62 243.0 158 80.4
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 6.8e-52 209.1 167 63.5
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 1.2e-51 208.4 261 47.1
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 7.5e-51 205.7 120 85.8
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 3.7e-50 203.4 183 60.7
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 8.3e-50 202.2 213 52.1
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 5.6e-46 189.5 513 32.9
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 8.0e-45 185.7 169 53.3
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.4e-44 184.9 129 70.5
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 3.1e-44 183.7 275 42.9
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 1.5e-43 181.4 501 30.9
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.3e-42 178.3 136 65.4
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 9.5e-38 162.2 289 37.0
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 6.0e-32 142.9 155 54.2
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 3.4e-27 127.1 79 73.4
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 4.4e-27 126.7 87 70.1
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 4.6e-24 116.7 79 81.0
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 2.6e-19 100.9 130 48.5
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 8.4e-18 95.9 155 43.2
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 1.2e-16 92.0 101 53.5
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 5.6e-14 83.2 74 59.5
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 9.6e-14 82.4 127 42.5
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 1.6e-13 81.6 51 78.4
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 4.8e-13 80.1 107 48.6
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 2.2e-10 71.2 43 81.4
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.2e-08 65.5 55 60.0
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.2e-08 65.5 52 71.2
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.6e-08 65.1 63 50.8
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 1.8e-07 61.6 76 51.3
TWI38G0197 Tripterygium wilfordii HOM05D002054 ORTHO05D005362 8.7e-07 59.3 150 32.0
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 2.5e-06 57.8 28 85.7
Glyma.02G160100 Glycine max HOM05D002054 ORTHO05D005362 5.6e-06 56.6 173 27.7


User provided reference genes

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