Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 2.3e-199 698.7 362 100.0
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 1.8e-191 672.5 362 92.0
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 1.1e-185 653.3 340 99.1
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 6.9e-164 580.9 373 82.8
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 4.4e-158 561.6 364 80.2
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 6.5e-154 547.7 340 80.3
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 5.5e-153 544.7 340 80.3
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 4.0e-143 511.9 374 72.2
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 9.5e-137 490.7 374 73.5
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 2.3e-135 486.1 374 73.0
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 2.6e-134 482.6 374 67.9
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 2.2e-133 479.6 373 67.3
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 5.4e-132 474.9 374 70.9
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 7.0e-132 474.6 373 67.6
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 9.2e-132 474.2 373 68.1
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 4.5e-131 471.9 367 68.7
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 1.7e-130 469.9 390 64.9
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 6.6e-130 468.0 377 69.0
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 4.3e-129 465.3 372 72.0
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 9.5e-129 464.2 377 67.6
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 1.6e-128 463.4 355 67.9
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 4.7e-128 461.8 379 68.3
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 4.7e-128 461.8 375 69.1
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 3.0e-127 459.1 421 62.0
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 3.0e-127 459.1 378 69.3
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 4.0e-127 458.8 377 66.8
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 5.7e-126 454.9 369 66.4
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 7.5e-126 454.5 363 67.2
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 9.8e-126 454.1 353 67.7
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.3e-125 453.8 363 66.9
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 1.7e-125 453.4 377 67.6
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 2.9e-125 452.6 373 65.1
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 2.9e-125 452.6 377 63.1
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 3.7e-125 452.2 371 67.1
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 4.9e-125 451.8 377 64.2
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 6.4e-125 451.4 363 66.9
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 1.4e-124 450.3 415 63.1
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 1.8e-124 449.9 376 64.6
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 3.2e-124 449.1 373 67.6
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 7.0e-124 448.0 363 66.4
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 9.2e-124 447.6 382 63.4
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 1.6e-123 446.8 373 64.6
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 2.7e-123 446.0 344 67.2
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 3.5e-123 445.7 376 66.0
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 3.9e-122 442.2 426 62.9
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 3.3e-121 439.1 354 64.4
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 5.6e-121 438.3 423 58.2
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 4.7e-120 435.3 376 61.4
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 6.2e-120 434.9 394 60.7
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 1.0e-119 434.1 440 55.9
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 1.4e-119 433.7 355 66.5
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 2.3e-119 433.0 390 60.5
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.0e-118 429.9 386 60.9
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 8.3e-117 424.5 371 65.5
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 4.1e-116 422.2 365 66.0
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 1.2e-115 420.6 377 65.5
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.2e-115 420.6 373 61.4
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 1.6e-115 420.2 392 61.0
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.6e-115 420.2 342 65.8
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 2.0e-115 419.9 349 63.9
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 2.0e-115 419.9 383 59.5
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 2.7e-115 419.5 379 61.5
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.5e-115 419.1 376 59.8
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 3.0e-114 416.0 355 62.8
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 3.9e-114 415.6 357 63.9
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 6.6e-114 414.8 359 62.7
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 1.1e-113 414.1 349 63.3
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 1.1e-113 414.1 353 64.3
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 1.5e-113 413.7 364 66.5
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 1.9e-113 413.3 364 66.5
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 3.3e-113 412.5 373 64.1
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 1.2e-112 410.6 381 61.7
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 1.6e-112 410.2 352 62.2
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 6.2e-112 408.3 387 59.2
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 4.0e-111 405.6 348 63.8
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 4.0e-111 405.6 381 61.2
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 8.9e-111 404.4 358 60.1
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 8.9e-111 404.4 368 60.3
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 1.5e-110 403.7 368 61.7
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 1.5e-110 403.7 385 59.7
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 1.3e-109 400.6 353 64.6
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 1.7e-109 400.2 353 63.7
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 4.9e-109 398.7 348 62.1
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 1.4e-108 397.1 353 61.8
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 7.1e-108 394.8 375 61.6
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 4.6e-107 392.1 369 62.6
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 1.3e-106 390.6 359 61.6
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 8.6e-106 387.9 369 60.4
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 2.1e-104 383.3 359 60.4
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 2.1e-104 383.3 371 58.8
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 2.3e-103 379.8 354 65.3
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 6.8e-103 378.3 358 58.9
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 8.9e-103 377.9 357 60.2
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 1.1e-100 370.9 369 59.3
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 4.1e-100 369.0 376 59.8
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 2.1e-99 366.7 370 59.2
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 4.6e-99 365.5 353 59.8
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 2.5e-97 359.8 423 52.5
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 1.6e-96 357.1 353 60.1
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 2.8e-96 356.3 371 58.5
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 6.2e-96 355.1 390 54.6
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 6.2e-96 355.1 371 56.9
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 5.2e-95 352.1 371 57.7
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 5.2e-95 352.1 371 57.7
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 6.9e-95 351.7 355 56.1
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 7.6e-94 348.2 355 58.6
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 1.7e-93 347.1 349 58.2
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 2.9e-93 346.3 345 57.4
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 3.2e-92 342.8 383 55.6
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 3.2e-92 342.8 388 53.6
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 2.7e-91 339.7 362 55.2
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 7.8e-91 338.2 348 57.5
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 1.5e-89 334.0 354 55.9
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 2.5e-89 333.2 278 62.2
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 2.5e-89 333.2 514 43.8
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 4.3e-89 332.4 326 57.1
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 3.6e-88 329.3 349 57.0
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 4.8e-88 328.9 348 57.8
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 2.6e-86 323.2 478 46.2
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 3.2e-84 316.2 394 51.8
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 5.4e-84 315.5 320 55.3
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.1e-83 313.5 314 55.1
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 6.2e-80 302.0 274 60.9
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 9.0e-79 298.1 398 49.2
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 1.2e-78 297.7 334 54.2
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 8.2e-72 275.0 403 46.9
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 1.4e-71 274.2 407 47.4
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 5.3e-71 272.3 295 51.5
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 6.3e-64 248.8 216 64.4
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 3.1e-63 246.5 272 53.3
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 3.4e-62 243.0 369 45.8
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 2.2e-61 240.4 166 70.5
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 1.4e-60 237.7 248 53.6
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 1.8e-58 230.7 316 48.4
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 1.8e-58 230.7 316 48.4
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 2.0e-54 217.2 311 48.2
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.1e-52 211.5 200 57.5
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 7.9e-51 205.3 188 62.8
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 2.8e-48 196.8 98 89.8
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.5e-46 189.5 99 88.9
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.5e-46 189.5 99 88.9
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 2.9e-45 186.8 683 29.3
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 3.2e-44 183.3 223 47.1
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 3.7e-40 169.9 93 87.1
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 1.2e-38 164.9 220 50.5
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 1.5e-33 147.9 232 44.0
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.3e-32 144.8 108 72.2
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 1.0e-29 135.2 71 87.3
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 6.1e-27 125.9 181 48.6
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 4.0e-26 123.2 71 80.3
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 1.3e-24 118.2 140 52.9
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 2.8e-24 117.1 111 49.5
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 4.8e-24 116.3 352 31.5
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 9.1e-23 112.1 86 53.5
Sopen12g027930 Solanum pennellii HOM05D004432 ORTHO05D051027 3.5e-22 110.2 128 54.7
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 4.5e-22 109.8 65 80.0
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 1.0e-21 108.6 180 41.7
Solyc12g077430.1 Solanum lycopersicum HOM05D004432 ORTHO05D051027 3.8e-13 80.1 51 80.4
Solyc12g077440.2 Solanum lycopersicum HOM05D004432 ORTHO05D390146 1.1e-12 78.6 198 32.8
CAN.G270.3 Capsicum annuum HOM05D004432 ORTHO05D005427 4.7e-11 73.2 41 80.5
Lj1g0003853 Lotus japonicus HOM05D004432 ORTHO05D005427 5.2e-10 69.7 63 52.4
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 2.6e-09 67.4 74 48.6
AUR62036780 Chenopodium quinoa HOM05D056044 ORTHO05D137976 2.0e-06 57.8 40 62.5


User provided reference genes

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