Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 0.0e+00 1119.8 691 100.0
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 0.0e+00 1088.6 691 97.0
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.2e-308 1062.8 691 90.0
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 4.7e-270 934.5 696 80.7
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.1e-246 855.9 700 77.3
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 5.8e-236 821.2 709 71.7
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 1.1e-218 763.8 722 71.1
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 5.6e-138 495.7 749 54.9
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 1.1e-136 491.5 759 53.6
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 5.2e-136 489.2 772 52.1
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 5.8e-135 485.7 258 97.3
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 5.1e-123 446.0 762 51.8
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.9e-117 427.6 743 46.7
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 8.7e-115 418.7 748 46.3
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 4.8e-113 412.9 720 51.5
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 2.0e-111 407.5 715 50.2
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 1.9e-109 401.0 700 44.1
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 2.3e-107 394.0 739 47.5
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 3.9e-107 393.3 701 47.2
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 2.5e-106 390.6 740 48.6
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 3.3e-106 390.2 708 45.5
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 9.7e-106 388.7 647 48.1
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 1.3e-105 388.3 724 48.1
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 1.4e-104 384.8 598 48.3
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 2.2e-102 377.5 732 44.3
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 2.7e-100 370.5 718 46.1
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 7.9e-100 369.0 716 42.6
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 2.3e-99 367.5 641 48.2
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 3.3e-98 363.6 774 44.7
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 7.4e-98 362.5 701 41.1
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 9.7e-98 362.1 770 43.6
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.7e-97 361.3 732 46.7
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 1.7e-97 361.3 722 44.5
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 2.8e-97 360.5 696 48.7
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 8.2e-97 359.0 676 42.8
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 3.1e-96 357.1 741 40.8
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 2.0e-95 354.4 694 46.3
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 3.4e-95 353.6 713 45.2
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 3.8e-94 350.1 699 48.1
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 5.5e-93 346.3 643 46.0
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 1.4e-91 341.7 725 47.0
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 7.4e-90 335.9 639 46.0
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 2.2e-89 334.3 731 41.0
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 4.1e-88 330.1 705 41.1
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 5.3e-88 329.7 660 42.6
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 5.3e-88 329.7 774 44.3
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 2.0e-87 327.8 733 42.6
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 3.5e-87 327.0 725 42.5
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 5.9e-87 326.2 798 39.3
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 5.9e-87 326.2 701 45.4
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 7.7e-87 325.9 710 42.1
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 7.7e-87 325.9 724 43.5
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 1.7e-86 324.7 750 45.1
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.9e-85 321.2 699 47.6
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 4.2e-85 320.1 687 45.9
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 1.2e-84 318.5 722 39.8
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 8.0e-84 315.8 708 41.4
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.0e-83 315.5 807 42.0
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 1.8e-83 314.7 707 44.3
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 2.3e-83 314.3 669 46.6
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 3.3e-82 310.5 748 44.1
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 9.7e-82 308.9 714 43.6
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 9.7e-82 308.9 701 42.9
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 9.7e-82 308.9 721 43.8
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 6.3e-81 306.2 728 39.3
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 1.4e-80 305.1 698 47.0
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 5.3e-80 303.1 731 40.2
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 7.0e-80 302.8 731 40.1
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 7.0e-80 302.8 731 40.1
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 1.2e-79 302.0 749 42.1
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 1.2e-79 302.0 723 39.4
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 1.6e-79 301.6 754 37.5
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 8.5e-78 295.8 748 39.2
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 1.1e-77 295.4 727 43.9
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 1.2e-76 292.0 685 44.7
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 2.7e-76 290.8 187 80.2
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.5e-74 285.0 689 41.1
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 2.0e-74 284.6 643 42.8
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 7.5e-74 282.7 659 44.5
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.3e-73 282.0 684 44.6
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 2.2e-73 281.2 631 39.5
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 6.3e-73 279.6 640 41.6
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 5.3e-72 276.6 600 39.3
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 2.0e-71 274.6 703 39.8
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 3.5e-71 273.9 675 38.4
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.7e-70 271.6 674 39.3
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 3.8e-70 270.4 688 43.3
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 1.1e-69 268.9 591 40.1
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 2.5e-69 267.7 647 40.2
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 7.2e-69 266.2 684 42.3
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 2.7e-68 264.2 703 37.8
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 8.8e-67 259.2 706 36.0
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 2.6e-66 257.7 693 41.0
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 5.7e-66 256.5 623 38.2
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.3e-65 255.4 634 37.9
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 8.3e-65 252.7 473 43.6
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 7.0e-64 249.6 688 40.6
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 2.9e-62 244.2 637 39.2
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 4.7e-60 236.9 685 40.1
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 1.5e-58 231.9 707 40.0
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 1.1e-56 225.7 735 39.2
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 3.1e-56 224.2 732 33.9
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 4.1e-56 223.8 657 35.5
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 1.6e-55 221.9 714 34.5
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 7.8e-55 219.5 577 37.8
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 2.1e-52 211.5 691 39.7
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.0e-51 209.1 708 39.1
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.2e-50 205.7 386 54.9
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 2.0e-50 204.9 571 41.3
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 2.6e-50 204.5 714 39.1
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 6.4e-49 199.9 709 38.5
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 6.4e-49 199.9 332 46.7
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 5.4e-48 196.8 693 36.8
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 5.4e-48 196.8 564 40.6
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.7e-46 191.8 714 38.5
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 3.9e-46 190.7 642 39.4
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 3.9e-46 190.7 573 40.7
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 5.0e-46 190.3 609 34.6
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 3.3e-45 187.6 230 52.6
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 3.3e-45 187.6 616 34.7
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 7.3e-45 186.4 552 35.3
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 2.8e-44 184.5 506 37.9
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 8.0e-44 183.0 544 41.0
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.8e-43 181.8 775 35.5
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 5.2e-43 180.3 690 37.0
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 6.8e-43 179.9 439 47.2
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 2.6e-42 177.9 716 38.5
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 3.4e-42 177.6 701 31.4
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 4.4e-42 177.2 649 38.2
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 4.4e-42 177.2 424 38.0
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 4.4e-42 177.2 730 37.1
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 4.9e-41 173.7 559 37.2
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 3.5e-39 167.5 662 37.0
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 2.3e-38 164.9 571 33.3
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 6.6e-38 163.3 490 38.8
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 3.3e-37 161.0 667 32.7
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 3.6e-36 157.5 633 32.4
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 1.4e-35 155.6 518 33.2
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 4.0e-35 154.1 328 38.4
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 1.2e-34 152.5 652 29.9
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 2.0e-34 151.8 403 35.7
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 3.2e-32 144.4 163 56.4
Peaxi162Scf00559g00031 Petunia axillaris HOM05D003795 ORTHO05D004308 2.8e-28 131.3 589 28.4
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 1.8e-27 128.6 506 30.2
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 2.4e-27 128.3 494 40.5
Peaxi162Scf00036g00224 Petunia axillaris HOM05D002102 ORTHO05D004119 2.4e-27 128.3 194 47.4
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.1e-27 127.9 660 28.2
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 4.0e-27 127.5 499 33.3
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 4.0e-27 127.5 297 38.0
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 1.9e-24 118.6 364 45.3
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 3.2e-24 117.9 504 34.3
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 3.2e-24 117.9 504 34.3
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 7.1e-24 116.7 719 27.4
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 1.7e-22 112.1 497 32.6
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 5.1e-22 110.5 136 51.5
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 1.9e-21 108.6 499 36.7
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 1.1e-19 102.8 329 47.7
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 1.5e-18 99.0 140 49.3
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 1.1e-16 92.8 275 33.8
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 1.4e-16 92.4 384 37.8
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.4e-16 91.7 240 37.9
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 5.4e-16 90.5 586 29.2
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 1.3e-14 85.9 126 48.4
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 3.0e-14 84.7 211 37.9
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 1.1e-13 82.8 131 48.1
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 4.0e-11 74.3 97 48.5
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 2.0e-10 72.0 115 45.2
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 4.5e-10 70.9 202 32.2
Oeu030973.1 Olea europaea HOM05D003795 ORTHO05D004308 1.9e-08 65.5 64 60.9
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 4.2e-08 64.3 113 43.4
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 4.6e-07 60.8 58 60.3


User provided reference genes

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