Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 6.9e-287 989.9 502 100.0
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 8.1e-280 966.5 502 97.6
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 2.4e-271 938.3 502 94.6
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 3.9e-250 867.8 505 87.1
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 3.7e-240 834.7 502 84.9
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 3.0e-226 788.5 493 80.7
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 9.5e-220 766.9 492 77.6
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 9.5e-220 766.9 492 77.6
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 2.1e-219 765.8 542 73.1
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 3.0e-157 559.3 495 57.4
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 5.7e-156 555.1 496 58.3
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 2.2e-155 553.1 493 59.0
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 1.8e-154 550.1 495 57.8
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 3.1e-154 549.3 496 57.9
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 5.9e-153 545.0 499 57.1
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 1.3e-152 543.9 497 56.3
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 8.5e-152 541.2 492 56.5
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 1.9e-151 540.0 495 55.8
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 1.9e-148 530.0 492 55.1
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 1.4e-146 523.9 492 52.2
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 3.1e-146 522.7 495 54.3
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 6.9e-146 521.5 492 54.7
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 5.9e-145 518.5 480 54.8
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 7.7e-145 518.1 500 55.4
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 2.2e-144 516.5 488 54.7
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 3.8e-144 515.8 496 54.6
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 1.4e-143 513.8 473 56.7
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 2.5e-143 513.1 492 52.8
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 3.2e-143 512.7 476 56.3
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 4.2e-143 512.3 494 53.8
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.7e-142 508.8 495 53.3
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 5.1e-141 505.4 495 53.1
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 5.1e-141 505.4 492 52.0
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.3e-140 502.7 495 52.7
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 4.4e-140 502.3 486 53.3
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.7e-139 500.4 492 51.4
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.2e-139 500.0 495 52.7
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.8e-139 499.6 495 52.5
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 6.3e-139 498.4 486 51.9
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 1.4e-138 497.3 497 52.1
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 4.1e-138 495.7 497 51.5
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 7.0e-138 495.0 496 52.4
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 9.1e-138 494.6 488 52.9
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 1.5e-137 493.8 493 52.9
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.0e-137 493.4 496 52.6
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.6e-137 493.0 492 51.4
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 4.5e-137 492.3 494 53.0
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 5.9e-137 491.9 496 52.6
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.0e-136 491.1 496 52.6
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 1.7e-136 490.3 490 53.5
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 3.8e-136 489.2 498 51.8
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 5.0e-136 488.8 495 52.9
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 2.5e-135 486.5 497 50.9
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 5.5e-135 485.3 495 50.7
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 7.2e-135 485.0 498 52.0
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 1.2e-134 484.2 485 50.9
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 6.1e-134 481.9 488 51.2
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 8.0e-134 481.5 489 50.5
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 8.0e-134 481.5 489 49.9
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 1.8e-133 480.3 501 50.1
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 3.0e-133 479.6 484 51.2
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 3.0e-133 479.6 505 51.3
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 5.2e-133 478.8 484 50.8
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 6.7e-133 478.4 494 52.0
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 1.5e-132 477.2 480 52.9
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 2.0e-132 476.9 493 49.7
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 2.6e-132 476.5 494 49.4
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 2.6e-132 476.5 505 50.1
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 2.6e-132 476.5 505 50.1
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 3.3e-132 476.1 495 52.1
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 4.4e-132 475.7 484 52.3
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 9.7e-132 474.6 489 50.3
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 2.2e-131 473.4 492 50.8
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 3.7e-131 472.6 373 63.8
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 4.8e-131 472.2 506 49.6
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 2.4e-130 469.9 492 49.2
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 5.3e-130 468.8 484 51.7
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 2.6e-129 466.5 496 50.6
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 1.0e-128 464.5 483 48.2
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 2.9e-128 463.0 493 48.1
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 3.8e-128 462.6 492 49.6
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 1.5e-127 460.7 492 49.4
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 5.5e-127 458.8 496 49.8
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 1.6e-126 457.2 485 50.9
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 2.1e-126 456.8 490 49.4
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 8.0e-126 454.9 487 49.9
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 1.0e-125 454.5 490 49.4
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 1.4e-125 454.1 490 49.6
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 2.3e-125 453.4 480 49.4
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 5.2e-125 452.2 492 48.4
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 1.5e-124 450.7 491 49.5
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 3.3e-124 449.5 489 49.3
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 5.7e-124 448.7 489 47.6
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 5.7e-124 448.7 496 47.6
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 3.1e-122 443.0 495 48.1
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 5.3e-122 442.2 489 48.5
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 1.6e-121 440.7 496 49.0
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 7.7e-121 438.3 488 47.7
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 7.7e-121 438.3 405 54.8
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 2.2e-115 420.2 480 49.0
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 3.1e-114 416.4 373 54.7
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 9.1e-114 414.8 496 46.2
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 1.2e-113 414.5 484 46.1
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 1.0e-109 401.4 469 48.6
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 1.8e-109 400.6 493 46.2
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 4.0e-109 399.4 382 50.8
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 2.0e-108 397.1 488 46.3
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 9.2e-106 388.3 492 44.1
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 6.0e-97 359.0 440 45.0
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 1.5e-95 354.4 468 43.6
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 1.9e-95 354.0 525 37.9
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 8.0e-94 348.6 376 48.7
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 4.0e-93 346.3 407 48.2
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 3.7e-91 339.7 479 43.0
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 3.0e-88 330.1 496 36.9
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 3.9e-88 329.7 328 51.2
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 2.1e-86 323.9 414 42.8
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 2.3e-85 320.5 286 56.3
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 8.9e-85 318.5 499 41.5
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 5.8e-84 315.8 288 55.6
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 1.7e-83 314.3 254 68.1
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 4.9e-83 312.8 284 55.6
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 2.3e-80 303.9 244 60.7
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.5e-79 300.4 495 37.8
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 1.4e-74 284.6 365 46.6
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 9.2e-74 282.0 416 38.5
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 2.8e-70 270.4 351 40.7
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 2.0e-68 264.2 419 37.5
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 1.6e-65 254.6 294 44.6
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 3.3e-63 246.9 379 38.3
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 1.3e-62 245.0 184 66.3
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 3.1e-61 240.4 248 54.4
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 3.8e-59 233.4 473 31.9
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 1.1e-58 231.9 258 50.4
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 9.3e-58 228.8 313 44.1
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 4.6e-57 226.5 159 66.0
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 1.0e-56 225.3 436 34.9
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 1.3e-54 218.4 475 33.1
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 2.1e-54 217.6 185 56.8
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 2.1e-54 217.6 535 31.0
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 2.4e-53 214.2 379 34.8
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 7.6e-52 209.1 626 29.2
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 7.6e-52 209.1 487 31.8
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 5.5e-50 203.0 499 31.1
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 2.7e-49 200.7 230 47.4
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 6.7e-48 196.1 237 45.6
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 9.6e-47 192.2 172 56.4
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 5.8e-44 183.0 544 27.9
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 3.8e-43 180.3 414 30.9
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.9e-42 177.9 118 72.9
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 1.6e-41 174.9 201 47.8
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 2.3e-40 171.0 93 89.2
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 9.7e-39 165.6 279 37.3
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 1.4e-37 161.8 266 38.3
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 3.1e-37 160.6 340 35.3
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 2.5e-34 151.0 459 28.3
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 3.9e-32 143.7 473 28.3
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 3.7e-30 137.1 122 50.8
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 4.1e-29 133.7 115 58.3
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 5.0e-27 126.7 97 58.8
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 2.7e-25 120.9 134 48.5
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 7.9e-25 119.4 133 48.1
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 1.4e-24 118.6 146 43.2
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 1.0e-19 102.4 113 43.4
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 1.3e-19 102.1 150 42.0
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 1.9e-18 98.2 119 42.9
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 3.6e-17 94.0 337 26.7
MCO07G121 Micromonas commoda HOM05D001952 ORTHO05D004913 1.4e-13 82.0 167 29.9
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 3.5e-12 77.4 147 36.1
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 8.5e-11 72.8 72 50.0
Cfa025427 Carpinus fangiana HOM05D000553 ORTHO05D125085 7.5e-07 59.7 70 31.4


User provided reference genes

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