Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 3.9e-85 318.2 167 100.0
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 1.5e-84 316.2 167 99.4
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 1.9e-79 299.3 167 94.6
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 2.8e-67 258.8 166 83.1
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 1.8e-66 256.1 170 82.9
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 2.0e-65 252.7 174 79.9
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 4.3e-60 235.0 127 96.1
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 4.5e-49 198.4 153 68.6
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 4.5e-49 198.4 152 70.4
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 4.5e-49 198.4 150 72.0
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 3.8e-48 195.3 153 68.6
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.4e-47 193.4 153 68.0
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 1.9e-47 193.0 154 69.5
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 2.5e-47 192.6 152 71.1
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 3.2e-47 192.2 152 69.1
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 4.2e-47 191.8 152 67.1
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 4.2e-47 191.8 152 67.1
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 7.1e-47 191.0 152 69.1
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 1.6e-46 189.9 152 65.1
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 2.1e-46 189.5 154 67.5
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 2.1e-46 189.5 150 66.7
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 2.7e-46 189.1 158 64.6
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 2.7e-46 189.1 158 64.6
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 3.5e-46 188.7 154 66.9
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 6.0e-46 188.0 154 66.9
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 6.0e-46 188.0 154 64.3
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 7.9e-46 187.6 150 66.7
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 1.0e-45 187.2 152 67.1
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 1.8e-45 186.4 154 64.9
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 5.1e-45 184.9 153 63.4
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 5.1e-45 184.9 152 67.1
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 1.1e-44 183.7 147 68.7
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.5e-44 183.3 159 62.3
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.9e-44 183.0 151 66.9
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 3.3e-44 182.2 158 62.0
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 4.3e-44 181.8 157 62.4
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 4.3e-44 181.8 153 64.1
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 7.4e-44 181.0 151 64.9
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 7.4e-44 181.0 151 62.9
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 9.7e-44 180.6 153 64.1
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 9.7e-44 180.6 154 66.2
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 9.7e-44 180.6 151 66.2
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 1.3e-43 180.3 152 63.8
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 1.3e-43 180.3 153 63.4
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 1.3e-43 180.3 161 60.9
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 2.2e-43 179.5 152 65.1
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 2.2e-43 179.5 154 63.0
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 2.8e-43 179.1 152 65.1
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 2.8e-43 179.1 152 64.5
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 3.7e-43 178.7 153 62.1
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 3.7e-43 178.7 160 61.2
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 3.7e-43 178.7 158 60.8
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 3.7e-43 178.7 154 64.3
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 6.3e-43 177.9 151 64.2
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 6.3e-43 177.9 151 62.3
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 6.3e-43 177.9 150 66.0
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 6.3e-43 177.9 151 66.9
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 8.2e-43 177.6 151 64.2
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 8.2e-43 177.6 152 62.5
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 8.2e-43 177.6 152 65.1
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 8.2e-43 177.6 151 65.6
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 1.8e-42 176.4 152 64.5
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 2.4e-42 176.0 151 64.2
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 2.4e-42 176.0 151 64.9
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 2.4e-42 176.0 151 64.9
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 2.4e-42 176.0 151 63.6
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 2.4e-42 176.0 154 62.3
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 3.1e-42 175.6 152 65.1
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 4.1e-42 175.3 151 65.6
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 4.1e-42 175.3 151 65.6
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 4.1e-42 175.3 152 65.8
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 5.3e-42 174.9 151 63.6
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 5.3e-42 174.9 151 63.6
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 5.3e-42 174.9 151 63.6
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 5.3e-42 174.9 155 63.9
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 9.0e-42 174.1 151 62.3
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 1.5e-41 173.3 151 63.6
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 4.5e-41 171.8 129 72.1
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 4.5e-41 171.8 153 64.1
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 4.5e-41 171.8 152 63.2
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 5.9e-41 171.4 151 62.3
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 7.6e-41 171.0 151 60.9
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 1.0e-40 170.6 152 60.5
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 1.3e-40 170.2 151 62.3
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 1.7e-40 169.9 152 61.8
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 5.0e-40 168.3 151 62.3
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 6.5e-40 167.9 152 58.6
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 8.5e-40 167.5 152 59.9
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 2.5e-39 166.0 159 57.9
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 9.3e-39 164.1 141 65.2
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 2.1e-38 162.9 151 55.6
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 2.7e-38 162.5 152 57.9
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 4.6e-38 161.8 152 57.2
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 8.8e-37 157.5 152 57.2
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 8.8e-37 157.5 155 55.5
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 1.1e-36 157.1 159 55.3
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 7.4e-36 154.5 152 55.9
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 7.4e-36 154.5 124 68.5
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 3.7e-35 152.1 153 56.2
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 3.7e-35 152.1 151 56.3
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 8.2e-35 151.0 154 53.2
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 8.8e-29 131.0 151 47.0
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 2.9e-24 115.9 159 44.0
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 2.6e-20 102.8 94 61.7
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 5.7e-20 101.7 174 36.2
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 8.2e-19 97.8 151 40.4
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.6e-17 93.6 84 58.3
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 1.1e-15 87.4 159 34.6
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 2.5e-15 86.3 155 36.1
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 2.7e-14 82.8 147 33.3
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 8.0e-14 81.3 75 56.0
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 1.8e-13 80.1 173 31.2
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 2.0e-12 76.6 152 36.2
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 8.5e-08 61.2 181 25.4


User provided reference genes

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