Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 0.0e+00 2171.0 1376 100.0
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 0.0e+00 2080.4 1365 97.7
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1618.6 1372 68.2
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1547.7 1386 71.1
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 0.0e+00 1390.9 1373 70.2
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1164.4 1388 53.7
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1143.3 1381 52.9
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1107.0 1377 51.5
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1102.4 1369 50.1
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1092.4 1362 49.4
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1081.2 962 60.5
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 9.4e-312 1074.3 993 58.1
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 2.3e-308 1062.8 1400 49.6
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 4.0e-305 1052.0 1379 48.1
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 6.5e-303 1044.6 1358 54.8
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.1e-302 1043.9 920 60.0
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 2.5e-302 1042.7 1380 50.4
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 5.7e-299 1031.6 1367 49.7
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 1.2e-296 1023.8 1361 46.2
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 2.2e-290 1003.0 1383 47.4
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 3.7e-290 1002.3 1401 43.5
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 4.8e-290 1001.9 1383 48.9
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 1.8e-289 1000.0 1362 49.0
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 2.2e-287 993.0 961 54.1
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 5.5e-286 988.4 1380 49.9
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 2.5e-283 979.5 982 55.4
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 4.3e-283 978.8 1432 46.5
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 2.0e-280 969.9 1377 46.4
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 7.7e-280 968.0 1442 44.7
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 8.5e-279 964.5 1363 46.6
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 2.5e-278 963.0 1388 44.7
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 5.1e-276 955.3 1383 44.8
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 1.7e-274 950.3 978 54.5
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 6.3e-274 948.3 1382 45.7
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 6.3e-274 948.3 1409 44.7
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 2.9e-271 939.5 980 53.5
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 3.8e-271 939.1 983 53.2
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 6.5e-271 938.3 1434 43.0
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 1.5e-270 937.2 1374 45.1
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 1.8e-268 930.2 1372 44.7
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 3.3e-267 926.0 969 52.3
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 5.7e-267 925.2 1399 44.0
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 2.8e-266 922.9 1412 41.0
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 4.8e-266 922.2 983 53.0
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 1.2e-264 917.5 977 52.4
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 1.2e-264 917.5 974 51.4
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 1.0e-263 914.4 1365 45.6
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 5.0e-263 912.1 1385 46.6
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.1e-262 911.0 756 63.0
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 2.5e-262 909.8 1387 46.4
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 2.1e-261 906.7 892 55.4
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 8.0e-261 904.8 1381 47.6
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.3e-260 903.3 1427 42.0
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 4.0e-260 902.5 1366 49.0
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 8.8e-260 901.4 1384 44.4
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 4.4e-259 899.0 1374 44.3
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 3.7e-258 896.0 1375 39.7
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 1.4e-257 894.0 1374 39.7
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 4.5e-256 889.0 1390 48.1
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 5.9e-256 888.6 1372 45.0
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 1.9e-254 883.6 1430 44.0
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 5.5e-254 882.1 993 50.7
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 3.0e-252 876.3 1407 42.4
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 2.0e-251 873.6 1393 43.5
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 5.9e-248 862.1 1469 41.3
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 5.9e-248 862.1 1372 42.5
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 3.8e-247 859.4 1397 42.1
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 1.9e-246 857.1 907 52.0
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 1.2e-245 854.4 802 57.2
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 1.6e-245 854.0 922 51.8
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 1.6e-245 854.0 1374 42.4
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 8.9e-244 848.2 990 49.0
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 4.4e-243 845.9 1423 41.3
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 1.4e-241 840.9 1413 41.5
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 2.4e-241 840.1 925 50.9
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 3.2e-241 839.7 915 50.5
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 3.5e-240 836.3 1410 41.6
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 1.8e-236 823.9 812 55.4
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 1.4e-233 814.3 892 51.8
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 7.0e-233 812.0 1000 48.2
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 7.8e-232 808.5 816 54.4
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 1.6e-224 784.3 789 54.9
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 2.1e-221 773.9 1408 41.8
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 1.4e-220 771.2 1383 41.5
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 7.8e-216 755.4 1380 44.9
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.7e-215 754.2 1415 44.2
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 1.3e-210 738.0 1428 38.4
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 1.9e-206 724.2 1403 37.4
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 4.5e-203 713.0 1391 40.3
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 3.5e-184 650.2 571 58.8
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 1.4e-177 628.2 1277 35.9
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 5.0e-170 603.2 536 60.6
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 9.7e-166 589.0 889 44.3
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 1.5e-163 581.6 667 48.4
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.7e-162 578.2 1310 36.0
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 1.0e-159 568.9 983 38.1
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 3.1e-156 557.4 895 39.9
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 9.5e-137 492.7 867 38.1
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 2.8e-133 481.1 1158 32.0
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 2.7e-131 474.6 422 63.0
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 2.3e-122 444.9 413 59.3
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.5e-118 432.2 559 45.8
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 3.1e-103 381.3 931 32.7
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 1.7e-98 365.5 740 33.9
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 5.1e-98 364.0 681 43.3
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 7.6e-94 350.1 530 38.3
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 2.2e-93 348.6 816 35.7
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 3.8e-93 347.8 808 31.2
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 3.2e-84 318.2 836 30.6
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 2.1e-80 305.4 613 33.1
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 5.3e-79 300.8 290 50.3
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 2.9e-45 188.7 278 92.4
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 7.2e-44 184.1 688 27.6
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.5e-36 159.1 235 39.6
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.1e-35 156.0 560 25.5
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 2.0e-30 139.4 412 27.7
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 2.9e-21 109.0 100 54.0
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 4.2e-20 105.1 75 68.0
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 5.5e-20 104.8 295 29.8
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 3.6e-19 102.1 352 26.1
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 4.7e-19 101.7 516 24.4
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 1.0e-18 100.5 181 37.0
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 3.7e-16 92.0 548 23.5
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 3.7e-16 92.0 70 67.1
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 8.3e-16 90.9 68 69.1
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.5e-14 85.5 492 22.6
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 2.3e-13 82.8 286 28.0
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 2.9e-13 82.4 84 53.6
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.9e-12 79.7 92 46.7
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 7.3e-12 77.8 96 51.0
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 1.2e-11 77.0 95 46.3
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 4.4e-09 68.6 54 64.8
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 3.7e-08 65.5 64 54.7
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 8.3e-08 64.3 49 63.3
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 1.1e-07 63.9 419 22.7
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 4.1e-07 62.0 58 60.3
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 1.6e-06 60.1 53 56.6
Peaxi162Scf00137g00204 Petunia axillaris HOM05D008574 ORTHO05D010611 6.0e-06 58.2 38 78.9


User provided reference genes

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