Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 2.7e-68 261.9 135 100.0
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 1.3e-67 259.6 135 99.3
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 3.1e-56 221.9 136 81.6
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 7.8e-52 207.2 121 90.9
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 9.9e-39 163.7 121 72.7
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 1.7e-38 162.9 120 73.3
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 9.9e-31 137.1 125 53.6
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.2e-30 136.0 125 52.8
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.1e-29 133.7 119 55.5
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 3.2e-29 132.1 115 57.4
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 4.2e-29 131.7 115 59.1
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 1.2e-28 130.2 113 55.8
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 2.1e-28 129.4 121 51.2
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 7.8e-28 127.5 123 50.4
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 7.8e-28 127.5 124 50.8
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 1.0e-27 127.1 114 57.9
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 2.3e-27 125.9 123 50.4
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 5.1e-27 124.8 124 50.0
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 1.1e-26 123.6 126 50.0
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.8e-24 116.3 125 49.6
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 3.1e-24 115.5 119 51.3
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 1.5e-23 113.2 124 46.0
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.3e-22 110.2 125 45.6
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.2e-22 109.4 112 50.0
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 3.8e-22 108.6 112 49.1
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 3.8e-22 108.6 112 49.1
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 4.9e-22 108.2 133 48.9
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.9e-21 106.3 114 50.0
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.9e-21 106.3 114 50.0
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 2.4e-21 105.9 112 48.2
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 2.4e-21 105.9 111 49.5
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 4.2e-21 105.1 109 49.5
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 4.2e-21 105.1 125 47.2
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 4.2e-21 105.1 110 50.0
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 5.4e-21 104.8 123 48.8
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 5.4e-21 104.8 115 44.3
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 9.3e-21 104.0 122 45.1
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 4.6e-20 101.7 126 46.8
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 4.6e-20 101.7 130 44.6
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.3e-19 100.1 114 45.6
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 1.8e-19 99.8 122 45.1
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 2.3e-19 99.4 114 47.4
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 3.0e-19 99.0 111 43.2
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 5.1e-19 98.2 125 44.8
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 5.1e-19 98.2 114 46.5
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 8.7e-19 97.4 118 47.5
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 1.5e-18 96.7 113 47.8
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 1.5e-18 96.7 132 42.4
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.5e-18 96.7 123 45.5
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 1.5e-18 96.7 111 47.7
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 1.9e-18 96.3 127 39.4
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 2.1e-17 92.8 132 43.2
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 2.1e-17 92.8 127 41.7
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 2.8e-17 92.4 126 44.4
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 2.8e-17 92.4 113 40.7
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 3.6e-17 92.0 106 50.0
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 3.6e-17 92.0 130 43.1
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 3.6e-17 92.0 113 48.7
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 4.8e-17 91.7 121 43.0
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 6.2e-17 91.3 106 50.0
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.4e-16 90.1 127 40.2
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 2.4e-16 89.4 122 45.1
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 3.1e-16 89.0 123 41.5
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 3.1e-16 89.0 112 45.5
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 5.3e-16 88.2 106 49.1
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 1.2e-15 87.0 119 42.0
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 1.2e-15 87.0 103 42.7
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.2e-15 87.0 123 42.3
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 2.0e-15 86.3 113 43.4
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 2.0e-15 86.3 128 43.0
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 7.6e-15 84.3 118 42.4
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 7.6e-15 84.3 112 43.8
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 9.9e-15 84.0 112 45.5
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 2.2e-14 82.8 114 43.9
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 4.9e-14 81.6 113 40.7
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 4.9e-14 81.6 128 35.9
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 6.4e-14 81.3 128 35.9
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 8.4e-14 80.9 116 41.4
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 8.4e-14 80.9 111 45.9
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 8.4e-14 80.9 127 38.6
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 1.1e-13 80.5 109 46.8
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 1.1e-13 80.5 118 39.8
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 1.4e-13 80.1 130 40.0
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 1.4e-13 80.1 123 41.5
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 1.4e-13 80.1 114 41.2
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 1.9e-13 79.7 127 38.6
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 2.4e-13 79.3 127 40.9
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 3.2e-13 79.0 114 42.1
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 4.2e-13 78.6 108 38.0
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 5.5e-13 78.2 108 41.7
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 7.1e-13 77.8 127 33.9
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 9.3e-13 77.4 113 39.8
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 9.3e-13 77.4 117 40.2
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.6e-12 76.6 130 36.2
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.6e-12 76.6 130 36.2
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 2.7e-12 75.9 116 38.8
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 2.7e-12 75.9 110 40.0
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.7e-12 75.9 117 39.3
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 3.5e-12 75.5 119 36.1
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 4.6e-12 75.1 115 38.3
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 6.0e-12 74.7 108 37.0
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 6.0e-12 74.7 106 41.5
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 6.0e-12 74.7 124 36.3
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 6.0e-12 74.7 106 46.2
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 6.0e-12 74.7 113 41.6
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 7.9e-12 74.3 108 41.7
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 7.9e-12 74.3 108 41.7
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 1.0e-11 73.9 107 45.8
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 1.8e-11 73.2 113 41.6
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.3e-11 72.8 128 34.4
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.3e-11 72.8 128 34.4
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 2.3e-11 72.8 120 37.5
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 3.0e-11 72.4 122 38.5
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 3.9e-11 72.0 118 36.4
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 6.7e-11 71.2 108 36.1
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 8.7e-11 70.9 106 45.3
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.1e-10 70.5 124 34.7
Actinidia26927 Actinidia chinensis HOM05D004992 ORTHO05D006004 1.5e-10 70.1 98 43.9
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.5e-10 70.1 129 34.9
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.5e-10 70.1 120 35.8
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 3.3e-10 68.9 129 34.1
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 3.3e-10 68.9 127 32.3
DCAR_008138 Daucus carota HOM05D004992 ORTHO05D006004 5.6e-10 68.2 126 33.3
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 5.6e-10 68.2 129 32.6
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 7.4e-10 67.8 112 39.3
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 1.6e-09 66.6 112 34.8
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 1.6e-09 66.6 127 33.1
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 2.1e-09 66.2 116 37.1
DCAR_010042 Daucus carota HOM05D004992 ORTHO05D006004 2.1e-09 66.2 125 36.0
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 3.7e-09 65.5 117 33.3
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 4.8e-09 65.1 119 39.5
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 6.2e-09 64.7 114 34.2
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 8.2e-09 64.3 118 33.9
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 8.2e-09 64.3 116 37.1
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 1.4e-08 63.5 84 42.9
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 1.8e-08 63.2 109 35.8
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 2.4e-08 62.8 128 33.6
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 3.1e-08 62.4 117 36.8
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 3.1e-08 62.4 117 36.8
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 3.1e-08 62.4 117 36.8
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 4.0e-08 62.0 122 37.7
PGSC0003DMG400014425 Solanum tuberosum HOM05D000017 ORTHO05D001349 4.5e-07 58.5 131 32.8
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 6.5e-06 54.7 101 39.6


User provided reference genes

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