Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 2.2e-103 379.0 196 100.0
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 1.6e-98 362.8 189 98.9
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 1.6e-85 319.7 198 86.9
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 1.8e-81 306.2 199 81.9
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 3.9e-60 235.3 178 76.4
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 8.9e-57 224.2 166 77.1
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 7.1e-54 214.5 205 62.9
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 1.5e-51 206.8 196 63.3
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 1.1e-46 190.7 190 59.5
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 7.8e-45 184.5 170 66.5
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 1.0e-44 184.1 190 56.8
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 7.3e-43 177.9 198 54.5
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.5e-40 170.2 188 55.9
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 8.4e-39 164.5 188 50.0
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 3.2e-38 162.5 193 54.4
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 9.3e-38 161.0 198 52.0
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 9.3e-38 161.0 206 53.4
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.2e-37 160.6 188 52.7
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 3.5e-37 159.1 206 51.0
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 1.0e-36 157.5 193 53.9
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 1.3e-36 157.1 190 53.7
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 2.3e-36 156.4 202 47.5
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 3.0e-36 156.0 182 51.6
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 6.7e-36 154.8 190 53.2
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.5e-35 153.7 184 53.3
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.5e-35 153.7 201 48.8
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.9e-35 153.3 204 49.5
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 2.5e-35 152.9 193 49.7
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 2.5e-35 152.9 187 50.8
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 1.3e-34 150.6 190 48.9
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 3.7e-34 149.1 187 52.9
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 8.1e-34 147.9 212 54.2
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 8.1e-34 147.9 194 51.5
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 1.4e-33 147.1 202 46.5
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.0e-33 145.6 205 49.3
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 4.0e-33 145.6 188 48.4
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 9.0e-33 144.4 189 47.6
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 9.0e-33 144.4 182 53.8
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 1.2e-32 144.1 195 52.3
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 1.5e-32 143.7 182 49.5
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 1.5e-32 143.7 181 48.1
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 1.5e-32 143.7 189 49.2
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 2.0e-32 143.3 182 49.5
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 2.0e-32 143.3 188 48.4
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 4.5e-32 142.1 187 49.7
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 1.3e-31 140.6 193 47.2
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 2.2e-31 139.8 170 52.4
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 2.2e-31 139.8 192 47.4
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.9e-30 136.7 193 48.2
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 2.5e-30 136.3 185 47.0
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.2e-30 136.0 183 50.3
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 5.5e-30 135.2 184 46.7
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 5.5e-30 135.2 194 45.9
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 5.5e-30 135.2 170 52.9
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 9.3e-30 134.4 185 48.1
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 9.3e-30 134.4 192 47.4
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 1.6e-29 133.7 189 46.0
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 2.7e-29 132.9 183 45.9
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 7.9e-29 131.3 189 48.7
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 1.0e-28 131.0 203 46.3
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.0e-28 131.0 193 49.7
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.8e-28 130.2 188 47.9
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 8.7e-28 127.9 185 45.9
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 1.1e-27 127.5 190 48.9
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 1.9e-27 126.7 185 46.5
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.9e-27 126.7 190 47.9
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.5e-27 126.3 161 53.4
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.5e-27 126.3 192 45.3
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 3.3e-27 125.9 188 46.3
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 3.3e-27 125.9 190 46.3
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 4.3e-27 125.6 150 53.3
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 7.4e-27 124.8 186 48.4
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 7.4e-27 124.8 197 46.7
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.6e-26 123.6 200 44.0
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 2.1e-26 123.2 195 47.2
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 2.1e-26 123.2 184 45.7
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 2.8e-26 122.9 180 46.1
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 6.2e-26 121.7 192 44.8
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 8.2e-26 121.3 173 46.8
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.4e-25 120.6 189 45.5
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 3.1e-25 119.4 191 44.5
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 2.9e-23 112.8 203 42.9
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 6.5e-23 111.7 176 45.5
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 6.5e-23 111.7 197 39.6
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 8.4e-23 111.3 138 52.2
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 1.1e-22 110.9 178 42.1
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 3.2e-22 109.4 184 39.7
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 4.2e-22 109.0 183 42.1
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 4.2e-22 109.0 169 48.5
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 4.2e-22 109.0 191 42.4
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 7.1e-22 108.2 175 45.1
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 7.1e-22 108.2 175 45.1
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 9.3e-22 107.8 172 44.8
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 9.3e-22 107.8 179 43.6
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 4.6e-21 105.5 186 40.3
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 1.3e-20 104.0 138 50.0
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 1.3e-20 104.0 194 38.1
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.8e-20 103.6 191 39.8
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 2.3e-20 103.2 193 41.5
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 3.0e-20 102.8 187 46.0
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 8.7e-20 101.3 160 45.0
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.1e-19 100.9 174 43.7
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 2.5e-19 99.8 177 40.1
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 4.3e-19 99.0 131 51.1
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 5.7e-19 98.6 185 40.5
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 7.4e-19 98.2 190 40.0
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 1.3e-18 97.4 185 42.2
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 2.8e-18 96.3 179 42.5
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 4.8e-18 95.5 180 40.0
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 6.3e-18 95.1 188 41.5
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 2.4e-17 93.2 178 42.1
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 2.4e-17 93.2 178 42.1
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 4.1e-17 92.4 178 39.9
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 5.3e-17 92.0 178 42.7
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 6.9e-17 91.7 186 39.8
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 1.2e-16 90.9 184 40.8
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 4.5e-16 89.0 178 41.0
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 4.5e-16 89.0 138 49.3
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 7.7e-16 88.2 175 42.9
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 7.7e-16 88.2 127 49.6
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.0e-15 87.8 183 36.6
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 1.3e-15 87.4 185 40.0
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 1.7e-15 87.0 172 39.5
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 2.2e-15 86.7 159 41.5
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 2.9e-15 86.3 201 38.8
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 2.9e-15 86.3 183 35.5
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 2.9e-15 86.3 163 41.1
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 3.8e-15 85.9 172 41.3
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 6.5e-15 85.1 171 39.8
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 8.5e-15 84.7 180 39.4
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 2.5e-14 83.2 196 35.7
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 2.5e-14 83.2 171 38.6
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 2.5e-14 83.2 171 38.6
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 2.5e-14 83.2 179 37.4
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 4.2e-14 82.4 171 38.6
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 5.5e-14 82.0 170 41.8
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.6e-13 80.5 186 36.0
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 2.1e-13 80.1 89 53.9
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 2.7e-13 79.7 176 41.5
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 4.6e-13 79.0 174 37.9
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 6.1e-13 78.6 174 37.9
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 1.8e-12 77.0 174 37.4
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 6.7e-12 75.1 155 40.0
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 1.1e-11 74.3 270 31.9
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 2.0e-11 73.6 180 35.6
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 4.3e-11 72.4 179 36.3
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 5.7e-11 72.0 58 63.8
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 6.3e-10 68.6 105 45.7
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 3.1e-09 66.2 180 29.4
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 6.9e-09 65.1 156 33.3
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 6.9e-09 65.1 205 32.7
ClCG01G022190 Citrullus lanatus HOM05D004361 ORTHO05D004706 2.0e-08 63.5 183 33.3
MELO3C032917.2 Cucumis melo HOM05D004361 ORTHO05D004706 4.5e-08 62.4 164 33.5
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 7.7e-08 61.6 152 34.9
TPR.G5514 Trifolium pratense HOM05D004361 ORTHO05D004706 7.7e-08 61.6 79 48.1
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 5.0e-07 58.9 173 34.7
HPP92_001786 Vanilla planifolia HOM05D033938 ORTHO05D004706 8.5e-07 58.2 59 55.9
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 2.5e-06 56.6 155 34.2
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 2.5e-06 56.6 192 30.2
CDE05G3057 Ceratophyllum demersum HOM05D067338 ORTHO05D004706 9.4e-06 54.7 153 32.7
Sed0009826 Sechium edule HOM05D004361 ORTHO05D004706 9.4e-06 54.7 177 29.9


User provided reference genes

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