Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g079140.2 Solanum lycopersicum HOM05D007621 ORTHO05D009631 0.0e+00 1268.8 937 100.0
Sopen02g023940 Solanum pennellii HOM05D007621 ORTHO05D009631 0.0e+00 1204.5 937 91.5
PGSC0003DMG400022357 Solanum tuberosum HOM05D007621 ORTHO05D009631 8.0e-305 1050.4 611 85.4
CAN.G424.15 Capsicum annuum HOM05D007621 ORTHO05D009631 1.6e-273 946.4 584 80.5
Nitab4.5_0006573g0020 Nicotiana tabacum HOM05D007621 ORTHO05D009631 2.0e-255 886.3 540 81.5
Nitab4.5_0000190g0070 Nicotiana tabacum HOM05D007621 ORTHO05D009631 1.9e-253 879.8 533 82.0
Peaxi162Scf00083g00022 Petunia axillaris HOM05D007621 ORTHO05D009631 9.0e-240 834.3 527 78.9
CSS0049226 Camellia sinensis var. sinensis HOM05D007621 ORTHO05D009631 3.6e-188 662.9 572 61.0
GSVIVG01003190001 Vitis vinifera HOM05D007621 ORTHO05D009631 3.6e-188 662.9 536 63.6
Dinv40478 Davidia involucrata HOM05D007621 ORTHO05D009631 1.0e-187 661.4 590 60.2
Actinidia11809 Actinidia chinensis HOM05D007621 ORTHO05D009631 3.7e-185 652.9 526 63.9
Cc02_g12430 Coffea canephora HOM05D007621 ORTHO05D009631 1.1e-184 651.4 441 71.4
MBI02_g06002_MAGBIO Magnolia biondii HOM05D007621 ORTHO05D009631 1.7e-182 644.0 587 57.9
Rhsim02G0119600 Rhododendron simsii HOM05D007621 ORTHO05D009631 1.9e-181 640.6 507 64.9
MSTRG.14678 Avicennia marina HOM05D007621 ORTHO05D009631 2.5e-181 640.2 590 58.1
TAR624G0533 Trochodendron aralioides HOM05D007621 ORTHO05D009631 2.1e-180 637.1 557 60.7
SGA_v2.0_scaffold49G18280 Striga asiatica HOM05D007621 ORTHO05D009631 2.0e-178 630.6 519 62.6
Nn1g03894 Nelumbo nucifera HOM05D007621 ORTHO05D009631 1.7e-177 627.5 552 58.5
Hma1.2p1_1182F.1_g264810 Hydrangea macrophylla HOM05D007621 ORTHO05D009631 1.1e-176 624.8 583 59.0
ATR0693G363 Amborella trichopoda HOM05D007621 ORTHO05D009631 2.7e-175 620.2 434 68.0
SalBow7G3398 Salvia bowleyana HOM05D007621 ORTHO05D009631 1.7e-174 617.5 526 62.5
Haze_06574 Corylus avellana HOM05D007621 ORTHO05D009631 6.6e-174 615.5 534 61.6
Manes.16G020600 Manihot esculenta HOM05D007621 ORTHO05D009631 8.6e-174 615.1 487 62.0
SalBow7G0238 Salvia bowleyana HOM05D007621 ORTHO05D009631 8.6e-174 615.1 526 62.5
TWI38G0795 Tripterygium wilfordii HOM05D007621 ORTHO05D009631 1.1e-173 614.8 599 54.9
QL04p018250 Quercus lobata HOM05D007621 ORTHO05D009631 5.6e-173 612.5 460 66.1
ClCG03G005520 Citrullus lanatus HOM05D007621 ORTHO05D009631 4.9e-169 599.4 465 63.9
ECA248G3190 Erigeron canadensis HOM05D007621 ORTHO05D009631 2.4e-168 597.0 523 57.9
Sed0011037 Sechium edule HOM05D007621 ORTHO05D009631 5.4e-168 595.9 496 60.7
HPP92_005890 Vanilla planifolia HOM05D007621 ORTHO05D009631 1.6e-167 594.3 511 59.3
Sc14g0001480 Simmondsia chinensis HOM05D007621 ORTHO05D009631 6.0e-167 592.4 552 57.6
CDE12G0841 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 5.1e-166 589.3 545 57.8
Lj1C1213T4 Lonicera japonica HOM05D007621 ORTHO05D009631 6.6e-166 589.0 554 56.7
Ciclev10014484m.g Citrus clementina HOM05D007621 ORTHO05D009631 1.1e-165 588.2 516 59.5
Lsat_1_v5_gn_1_126820 Lactuca sativa HOM05D007621 ORTHO05D009631 1.5e-165 587.8 532 56.6
Glyma.15G067500 Glycine max HOM05D007621 ORTHO05D009631 7.3e-165 585.5 527 57.5
FvH4_3g03980 Fragaria vesca HOM05D007621 ORTHO05D009631 1.2e-164 584.7 495 59.6
AUR62014718 Chenopodium quinoa HOM05D007621 ORTHO05D009631 1.6e-164 584.3 456 64.3
RcHm_v2.0_Chr5g0006311 Rosa chinensis HOM05D007621 ORTHO05D009631 6.2e-164 582.4 493 59.2
VMungo0540G1980 Vigna mungo HOM05D007621 ORTHO05D009631 6.2e-164 582.4 409 66.7
CsaV3_1G011790 Cucumis sativus L. HOM05D007621 ORTHO05D009631 1.8e-163 580.9 465 62.8
EL10Ac8g20530 Beta vulgaris HOM05D007621 ORTHO05D009631 3.1e-163 580.1 437 66.1
Lj6g0025549 Lotus japonicus HOM05D007621 ORTHO05D009631 2.6e-162 577.0 610 51.1
Eucgr.E03798 Eucalyptus grandis HOM05D007621 ORTHO05D009631 2.2e-161 573.9 521 57.0
SEGI_29793 Sequoiadendron giganteum HOM05D007621 ORTHO05D009631 2.2e-161 573.9 498 58.0
FAN11G2677 Fragaria x ananassa HOM05D007621 ORTHO05D009631 2.9e-161 573.5 559 54.2
CDE01G0329 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 6.4e-161 572.4 508 59.4
MELO3C002556.2 Cucumis melo HOM05D007621 ORTHO05D009631 6.4e-161 572.4 514 57.4
Cfa000351 Carpinus fangiana HOM05D007621 ORTHO05D009631 8.4e-161 572.0 505 60.2
AUR62016897 Chenopodium quinoa HOM05D007621 ORTHO05D009631 1.1e-160 571.6 456 63.6
PGR042G2283 Punica granatum HOM05D007621 ORTHO05D009631 2.3e-158 563.9 483 58.4
Os04g0636000 Oryza sativa ssp. japonica HOM05D007621 ORTHO05D009631 1.9e-157 560.8 533 56.3
Zm00001eb069260 Zea mays HOM05D007621 ORTHO05D009631 3.3e-157 560.1 475 59.8
arahy.Tifrunner.gnm1.ann1.M1GH8V Arachis hypogaea HOM05D007621 ORTHO05D009631 7.3e-157 558.9 501 57.3
Prupe.4G036900 Prunus persica HOM05D007621 ORTHO05D009631 4.7e-156 556.2 496 57.3
HanXRQChr11g0338441 Helianthus annuus HOM05D007621 ORTHO05D009631 3.1e-155 553.5 463 59.6
MD05G1325500 Malus domestica HOM05D007621 ORTHO05D009631 4.4e-154 549.7 450 61.6
Ca_00253_v3 Cicer arietinum L. HOM05D007621 ORTHO05D009631 9.9e-154 548.5 487 57.5
Psat1g208720 Pisum sativum HOM05D007621 ORTHO05D009631 6.4e-153 545.8 472 57.8
arahy.Tifrunner.gnm1.ann1.14L1JV Arachis hypogaea HOM05D007621 ORTHO05D009631 8.7e-150 535.4 499 54.9
Mapoly0104s0019 Marchantia polymorpha HOM05D007621 ORTHO05D009631 1.1e-149 535.0 422 62.3
CDE01G0148 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 3.3e-149 533.5 449 60.4
FAN16G2797 Fragaria x ananassa HOM05D007621 ORTHO05D009631 2.1e-148 530.8 491 55.6
TPR.G36840 Trifolium pratense HOM05D007621 ORTHO05D009631 1.1e-144 518.5 510 53.1
Hund23606 Selenicereus undatus HOM05D007621 ORTHO05D009631 2.1e-143 514.2 377 68.4
Phvul.006G192200 Phaseolus vulgaris HOM05D007621 ORTHO05D009631 5.3e-139 499.6 571 49.4
PGR042G3240 Punica granatum HOM05D007621 ORTHO05D009631 1.5e-138 498.0 445 56.4
Zm00001eb081180 Zea mays HOM05D007621 ORTHO05D009631 2.3e-126 457.6 386 60.1
CBR_g725 Chara braunii HOM05D007621 ORTHO05D009631 3.1e-115 420.6 424 49.8
Thecc.06G199600 Theobroma cacao HOM05D007621 ORTHO05D009631 2.6e-114 417.5 502 46.8
Aqoxy1G02733 Aquilegia oxysepala HOM05D007621 ORTHO05D009631 3.7e-108 397.1 289 66.4
Eucgr.E03700 Eucalyptus grandis HOM05D007621 ORTHO05D009631 7.2e-96 356.3 362 52.8
Zm00001eb274720 Zea mays HOM05D007621 ORTHO05D009631 5.9e-90 336.7 273 63.4
Oeu050825.1 Olea europaea HOM05D007621 ORTHO05D009631 3.5e-82 310.8 301 58.5
RcHm_v2.0_Chr7g0240451 Rosa chinensis HOM05D007621 ORTHO05D009631 7.0e-75 286.6 384 42.7
CiPaw.09G157900 Carya illinoinensis HOM05D007621 ORTHO05D009631 1.6e-74 285.4 265 58.9
Medtr2g011780 Medicago truncatula HOM05D007621 ORTHO05D009631 2.8e-71 274.6 285 51.6
FAN25G1179 Fragaria x ananassa HOM05D007621 ORTHO05D009631 2.2e-68 265.0 242 59.9
arahy.Tifrunner.gnm1.ann1.C857YU Arachis hypogaea HOM05D007621 ORTHO05D009631 6.8e-62 243.4 282 47.5
Psat1g210360 Pisum sativum HOM05D007621 ORTHO05D009631 2.8e-55 221.5 191 57.1
FvH4_6g02023 Fragaria vesca HOM05D007621 ORTHO05D009631 4.0e-38 164.5 135 54.8
Glyma.13G246302 Glycine max HOM05D007621 ORTHO05D009631 8.1e-31 140.2 143 53.1
Cre02.g116800 Chlamydomonas reinhardtii HOM05D007621 ORTHO05D009631 5.3e-30 137.5 548 26.1
Atru.chr10.2012 Acer truncatum HOM05D007621 ORTHO05D009631 7.6e-29 133.7 135 52.6
Potri.004G034301 Populus trichocarpa HOM05D007621 ORTHO05D009631 1.5e-24 119.4 78 65.4
SGA_v2.0_scaffold32G13107 Striga asiatica HOM05D007621 ORTHO05D009631 2.6e-21 108.6 135 45.9
Cpa.g.sc27.127 Carica papaya HOM05D007621 ORTHO05D009631 3.8e-20 104.8 122 49.2
Atru.chr10.2011 Acer truncatum HOM05D007621 ORTHO05D009631 1.0e-12 80.1 49 67.3
AagrBONN_evm.TU.Sc2ySwM_340.408 Anthoceros agrestis HOM05D007621 ORTHO05D009631 2.9e-12 78.6 81 54.3
EL10Ac8g20531 Beta vulgaris HOM05D007621 ORTHO05D009631 4.2e-11 74.7 101 44.6
SGA_v2.0_scaffold86G26914 Striga asiatica HOM05D007621 ORTHO05D009631 4.2e-11 74.7 57 59.6
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 5.5e-11 74.3 174 33.9
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 1.5e-08 66.2 206 27.7
Sabra04G0020100 Salix brachista HOM05D007621 ORTHO05D009631 1.3e-07 63.2 169 27.2
SGA_v2.0_scaffold26G11386 Striga asiatica HOM05D007621 ORTHO05D009631 6.3e-07 60.8 61 49.2


User provided reference genes

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