Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 8.3e-174 613.6 309 100.0
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 2.0e-167 592.4 304 97.7
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 9.2e-157 557.0 310 91.6
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 4.5e-156 554.7 308 90.9
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 2.1e-153 545.8 310 89.0
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 4.7e-153 544.7 311 88.1
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 1.0e-147 526.9 312 85.6
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 8.1e-121 437.6 314 67.8
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 6.9e-120 434.5 301 70.1
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 9.0e-120 434.1 304 70.1
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 2.0e-119 433.0 305 69.2
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 2.9e-118 429.1 305 68.9
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 3.8e-118 428.7 302 68.9
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 1.9e-117 426.4 305 67.9
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 7.1e-117 424.5 304 68.4
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 1.0e-115 420.6 305 67.2
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 3.3e-114 415.6 313 64.5
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 3.3e-114 415.6 302 68.2
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 7.3e-114 414.5 311 66.2
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 9.6e-114 414.1 308 66.9
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 1.3e-113 413.7 305 66.9
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 2.1e-113 412.9 304 66.4
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.8e-113 412.5 309 66.3
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 3.1e-112 409.1 311 64.6
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 4.0e-112 408.7 305 64.9
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 6.9e-112 407.9 311 65.0
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 1.2e-111 407.1 315 65.4
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 1.2e-111 407.1 306 63.7
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 1.2e-111 407.1 313 65.8
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 2.0e-111 406.4 309 65.7
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 3.4e-111 405.6 315 64.8
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.4e-111 405.6 311 64.6
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 2.2e-110 402.9 309 64.4
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 2.9e-110 402.5 298 68.1
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 2.9e-110 402.5 309 65.0
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 2.9e-110 402.5 308 65.6
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 4.9e-110 401.7 311 63.7
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 6.4e-110 401.4 313 64.2
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 8.4e-110 401.0 310 64.5
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 1.9e-109 399.8 309 64.7
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 7.1e-109 397.9 308 64.3
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 7.1e-109 397.9 312 62.8
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 9.3e-109 397.5 304 63.5
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 1.2e-108 397.1 311 65.6
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 2.7e-108 396.0 306 64.1
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 2.7e-108 396.0 310 64.2
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 4.6e-108 395.2 304 63.8
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 6.0e-108 394.8 312 63.1
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 6.0e-108 394.8 312 63.1
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 6.0e-108 394.8 309 62.8
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 7.9e-108 394.4 309 65.4
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 1.0e-107 394.0 304 63.5
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 1.0e-107 394.0 304 63.5
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 1.3e-107 393.7 305 64.9
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 1.8e-107 393.3 301 65.1
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 1.8e-107 393.3 312 62.5
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 8.7e-107 391.0 301 66.4
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 3.3e-106 389.0 303 63.7
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 9.6e-106 387.5 305 61.6
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 1.3e-105 387.1 312 61.9
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 2.8e-105 386.0 305 61.3
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 1.1e-104 384.0 306 63.1
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 1.8e-104 383.3 304 62.8
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 5.3e-104 381.7 304 62.5
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 9.0e-104 380.9 298 65.4
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 2.0e-103 379.8 303 62.7
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 2.0e-103 379.8 304 61.5
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 4.5e-103 378.6 305 63.3
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 5.8e-103 378.3 305 62.0
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 5.8e-103 378.3 302 60.6
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 7.6e-103 377.9 308 62.3
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 7.6e-103 377.9 304 61.2
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 3.8e-102 375.6 297 63.3
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 6.5e-102 374.8 301 62.8
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 1.4e-101 373.6 306 61.1
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 1.2e-100 370.5 300 60.7
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 2.7e-100 369.4 304 62.8
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 3.5e-100 369.0 296 61.8
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 3.0e-99 365.9 296 63.2
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 4.3e-98 362.1 304 59.5
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 1.1e-96 357.5 352 53.7
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.1e-96 357.5 297 63.0
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.4e-96 357.1 297 63.0
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 1.8e-96 356.7 276 63.4
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.4e-96 356.3 297 62.6
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 5.3e-96 355.1 305 59.0
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 9.0e-96 354.4 297 62.6
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.0e-96 354.4 297 62.3
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.0e-96 354.4 297 62.3
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.4e-95 352.4 296 62.5
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.4e-95 352.4 296 62.5
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 4.5e-95 352.1 305 58.7
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 7.6e-95 351.3 297 62.3
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.7e-94 350.1 305 57.7
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.2e-94 349.7 297 62.0
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 1.4e-93 347.1 274 62.4
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 3.5e-92 342.4 315 57.5
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 4.6e-92 342.0 261 65.1
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.7e-91 337.8 296 61.1
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 1.1e-90 337.4 301 56.1
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 5.7e-90 335.1 302 55.0
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 2.8e-89 332.8 301 53.5
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 4.8e-89 332.0 308 59.4
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.0e-87 326.6 228 65.8
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.1e-85 320.9 301 51.5
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 3.2e-85 319.3 303 54.5
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 3.2e-85 319.3 346 50.0
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 9.4e-85 317.8 301 51.2
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 2.7e-84 316.2 303 51.8
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 4.6e-84 315.5 304 51.0
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 6.1e-84 315.1 302 54.3
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.3e-83 313.2 228 63.6
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 3.9e-83 312.4 304 53.0
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.9e-83 312.4 310 54.5
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 6.7e-83 311.6 302 51.0
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 6.7e-83 311.6 302 51.0
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 1.1e-82 310.8 308 51.6
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 1.5e-82 310.5 324 52.5
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 7.4e-82 308.1 301 50.2
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 1.7e-81 307.0 303 50.8
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 1.7e-81 307.0 303 50.8
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 2.2e-81 306.6 304 50.7
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 2.0e-79 300.1 307 48.5
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.7e-79 298.1 206 71.4
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 7.2e-77 291.6 300 49.0
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 2.0e-74 283.5 183 72.1
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 3.3e-74 282.7 317 46.4
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 4.5e-71 272.3 315 47.0
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 1.4e-67 260.8 196 60.7
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.5e-66 257.3 215 57.2
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 1.3e-65 254.2 255 53.7
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 4.1e-64 249.2 257 56.8
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 5.7e-58 228.8 148 68.9
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 3.8e-54 216.1 171 57.3
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 1.1e-48 198.0 144 58.3
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 5.6e-45 185.7 159 64.8
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 1.4e-43 181.0 338 36.1
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 8.6e-38 161.8 154 58.4
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 6.2e-36 155.6 206 44.7
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 4.6e-23 112.8 78 57.7
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 6.6e-22 109.0 234 31.6
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 5.6e-21 105.9 51 94.1
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 1.6e-20 104.4 262 29.4
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 3.6e-20 103.2 311 27.3
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 3.1e-19 100.1 162 35.2
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 1.3e-17 94.7 151 43.7
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 2.1e-15 87.4 54 74.1
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.9e-13 80.9 71 52.1
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 1.4e-11 74.7 102 49.0
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 8.9e-11 72.0 59 62.7
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 1.5e-10 71.2 284 24.3
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 2.2e-09 67.4 91 45.1
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 9.3e-08 62.0 158 32.9
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.2e-07 61.6 46 54.3
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 3.5e-07 60.1 203 25.1
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 3.5e-07 60.1 53 50.9
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 1.0e-06 58.5 216 25.9
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 1.7e-06 57.8 215 26.5
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 3.9e-06 56.6 215 27.0
Cfa027142 Carpinus fangiana HOM05D004773 ORTHO05D005943 6.6e-06 55.8 203 28.1


User provided reference genes

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