Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g078870.1 Solanum lycopersicum HOM05D007756 ORTHO05D009403 7.8e-21 102.8 51 100.0
PGSC0003DMG400022450 Solanum tuberosum HOM05D007756 ORTHO05D009403 9.5e-19 95.9 51 92.2
PGSC0003DMG400022449 Solanum tuberosum HOM05D007756 ORTHO05D009403 1.6e-18 95.1 51 92.2
PGSC0003DMG400022448 Solanum tuberosum HOM05D007756 ORTHO05D009403 2.9e-15 84.3 49 87.8
Solyc02g078890.1 Solanum lycopersicum HOM05D007756 ORTHO05D009403 7.1e-14 79.7 49 81.6
Sopen02g023700 Solanum pennellii HOM05D007756 ORTHO05D009403 7.1e-14 79.7 49 81.6
Nitab4.5_0003114g0110 Nicotiana tabacum HOM05D007756 ORTHO05D009403 2.1e-13 78.2 49 85.7
Cc02_g12640 Coffea canephora HOM05D007756 ORTHO05D009403 2.8e-10 67.8 46 76.1
Nitab4.5_0001170g0030 Nicotiana tabacum HOM05D007756 ORTHO05D009403 2.8e-10 67.8 43 83.7
Hma1.2p1_0144F.1_g064960 Hydrangea macrophylla HOM05D007756 ORTHO05D009403 3.6e-10 67.4 49 69.4
Gohir.D10G020400 Gossypium hirsutum HOM05D007756 ORTHO05D009403 4.8e-10 67.0 52 67.3
Gohir.D10G020250 Gossypium hirsutum HOM05D007756 ORTHO05D009403 1.1e-09 65.9 52 65.4
Cfa000371 Carpinus fangiana HOM05D007756 ORTHO05D009403 1.8e-09 65.1 47 68.1
Gohir.A10G019600 Gossypium hirsutum HOM05D007756 ORTHO05D009403 1.8e-09 65.1 47 66.0
CSS0020554 Camellia sinensis var. sinensis HOM05D007756 ORTHO05D009403 4.0e-09 63.9 43 67.4
CSS0041901 Camellia sinensis var. sinensis HOM05D007756 ORTHO05D009403 4.0e-09 63.9 43 67.4
Gohir.A10G019400 Gossypium hirsutum HOM05D007756 ORTHO05D009403 4.0e-09 63.9 47 63.8
Manes.16G038800 Manihot esculenta HOM05D007756 ORTHO05D009403 4.0e-09 63.9 47 68.1
Hma1.2p1_0144F.1_g064970 Hydrangea macrophylla HOM05D007756 ORTHO05D009403 6.9e-09 63.2 50 62.0
Gohir.A05G164200 Gossypium hirsutum HOM05D007756 ORTHO05D009403 9.0e-09 62.8 47 68.1
Gorai.009G172100 Gossypium raimondii HOM05D007756 ORTHO05D009403 9.0e-09 62.8 47 68.1
Hma1.2p1_0144F.1_g064980 Hydrangea macrophylla HOM05D007756 ORTHO05D009403 2.0e-08 61.6 50 62.0
Ciclev10017421m.g Citrus clementina HOM05D007756 ORTHO05D009403 2.6e-08 61.2 52 61.5
Potri.011G044800 Populus trichocarpa HOM05D007756 ORTHO05D009403 3.4e-08 60.8 49 59.2
CiPaw.09G159600 Carya illinoinensis HOM05D007756 ORTHO05D009403 4.4e-08 60.5 49 65.3
CiPaw.09G159700 Carya illinoinensis HOM05D007756 ORTHO05D009403 5.8e-08 60.1 49 65.3
Gohir.D05G167100 Gossypium hirsutum HOM05D007756 ORTHO05D009403 5.8e-08 60.1 47 66.0
Potri.004G036375 Populus trichocarpa HOM05D007756 ORTHO05D009403 9.9e-08 59.3 43 67.4
Thecc.06G196200 Theobroma cacao HOM05D007756 ORTHO05D009403 9.9e-08 59.3 47 61.7
Manes.17G040600 Manihot esculenta HOM05D007756 ORTHO05D009403 1.3e-07 58.9 48 64.6
MELO3C007317.2 Cucumis melo HOM05D007756 ORTHO05D009403 1.7e-07 58.5 48 60.4
VMungo0251G2707 Vigna mungo HOM05D007756 ORTHO05D009403 1.7e-07 58.5 51 64.7
Manes.16G022400 Manihot esculenta HOM05D007756 ORTHO05D009403 2.2e-07 58.2 47 68.1
BcaB03g13271 Brassica carinata HOM05D015938 ORTHO05D009403 3.8e-07 57.4 46 63.0
BcaB03g13272 Brassica carinata HOM05D015938 ORTHO05D009403 3.8e-07 57.4 46 63.0
CiPaw.10G120600 Carya illinoinensis HOM05D007756 ORTHO05D009403 3.8e-07 57.4 51 64.7
Glyma.07G191400 Glycine max HOM05D007756 ORTHO05D009403 3.8e-07 57.4 51 60.8
Phvul.002G223500 Phaseolus vulgaris HOM05D007756 ORTHO05D009403 6.4e-07 56.6 51 62.7
Gohir.A06G123802 Gossypium hirsutum HOM05D007756 ORTHO05D009403 8.4e-07 56.2 47 55.3
Gohir.D06G128600 Gossypium hirsutum HOM05D007756 ORTHO05D009403 8.4e-07 56.2 47 55.3
TAR679G0001 Trochodendron aralioides HOM05D007756 ORTHO05D009403 1.1e-06 55.8 47 63.8
Glyma.08G057900 Glycine max HOM05D007756 ORTHO05D009403 1.9e-06 55.1 51 58.8
Sed0004694 Sechium edule HOM05D007756 ORTHO05D009403 1.9e-06 55.1 48 58.3
GSVIVG01005837001 Vitis vinifera HOM05D007756 ORTHO05D009403 1.9e-06 55.1 49 55.1
Cpa.g.sc27.103 Carica papaya HOM05D007756 ORTHO05D009403 2.4e-06 54.7 43 58.1
Lalb_Chr09g0327421 Lupinus albus HOM05D007756 ORTHO05D009403 2.4e-06 54.7 50 56.0
RcHm_v2.0_Chr5g0006791 Rosa chinensis HOM05D007756 ORTHO05D009403 2.4e-06 54.7 43 58.1
Sed0008410 Sechium edule HOM05D007756 ORTHO05D009403 2.4e-06 54.7 47 57.4
BcaC07g38642 Brassica carinata HOM05D015938 ORTHO05D009403 3.2e-06 54.3 46 58.7
BolC8t49053H Brassica oleracea HOM05D015938 ORTHO05D009403 3.2e-06 54.3 46 58.7
BraA08t35278Z Brassica rapa HOM05D015938 ORTHO05D009403 3.2e-06 54.3 46 58.7
RcHm_v2.0_Chr5g0006781 Rosa chinensis HOM05D007756 ORTHO05D009403 3.2e-06 54.3 50 60.0
Prupe.4G039100 Prunus persica HOM05D007756 ORTHO05D009403 4.2e-06 53.9 47 61.7
Prupe.4G039200 Prunus persica HOM05D007756 ORTHO05D009403 4.2e-06 53.9 45 60.0
CARHR011410 Cardamine hirsuta HOM05D015938 ORTHO05D009403 5.4e-06 53.5 49 57.1
Ciclev10017282m.g Citrus clementina HOM05D007756 ORTHO05D009403 5.4e-06 53.5 40 67.5
FAN16G3405 Fragaria x ananassa HOM05D007756 ORTHO05D009403 5.4e-06 53.5 46 58.7
RcHm_v2.0_Chr5g0006801 Rosa chinensis HOM05D007756 ORTHO05D009403 5.4e-06 53.5 45 53.3
Aqoxy1G02679 Aquilegia oxysepala HOM05D007756 ORTHO05D009403 7.1e-06 53.1 55 58.2
Cfa000372 Carpinus fangiana HOM05D007756 ORTHO05D009403 7.1e-06 53.1 50 60.0
MELO3C007318.2 Cucumis melo HOM05D007756 ORTHO05D009403 9.3e-06 52.8 47 57.4
FAN11G3808 Fragaria x ananassa HOM05D007756 ORTHO05D009403 9.3e-06 52.8 46 58.7


User provided reference genes

Program Settings