Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g078270.3 Solanum lycopersicum HOM05D007781 ORTHO05D009769 1.4e-119 433.7 379 100.0
Sopen02g023130 Solanum pennellii HOM05D007781 ORTHO05D009769 7.6e-105 384.8 391 93.4
PGSC0003DMG400029720 Solanum tuberosum HOM05D007781 ORTHO05D009769 8.8e-93 344.7 393 83.2
CAN.G1164.27 Capsicum annuum HOM05D007781 ORTHO05D009769 2.8e-67 260.0 393 73.0
Nitab4.5_0003432g0040 Nicotiana tabacum HOM05D007781 ORTHO05D009769 1.7e-48 197.6 183 74.9
Nitab4.5_0007940g0030 Nicotiana tabacum HOM05D007781 ORTHO05D009769 5.8e-44 182.6 197 69.5
Peaxi162Scf00736g00429 Petunia axillaris HOM05D007781 ORTHO05D009769 8.6e-32 142.1 324 54.9
TAR627G0113 Trochodendron aralioides HOM05D007781 ORTHO05D009769 4.8e-14 83.2 99 73.7
FvH4_3g09310 Fragaria vesca HOM05D007781 ORTHO05D009769 3.1e-13 80.5 130 58.5
FAN11G2776 Fragaria x ananassa HOM05D007781 ORTHO05D009769 3.1e-13 80.5 130 58.5
Cc02_g13310 Coffea canephora HOM05D007781 ORTHO05D009769 4.0e-13 80.1 151 55.0
Duzib235G1462 Durio zibethinus HOM05D007781 ORTHO05D009769 4.0e-13 80.1 144 54.9
FAN21G0375 Fragaria x ananassa HOM05D007781 ORTHO05D009769 6.9e-13 79.3 147 54.4
Thecc.06G188400 Theobroma cacao HOM05D007781 ORTHO05D009769 6.9e-13 79.3 94 69.1
Hma1.2p1_0126F.1_g059410 Hydrangea macrophylla HOM05D007781 ORTHO05D009769 1.2e-12 78.6 141 54.6
Dinv40553 Davidia involucrata HOM05D007781 ORTHO05D009769 1.5e-12 78.2 100 70.0
MSTRG.14698 Avicennia marina HOM05D007781 ORTHO05D009769 4.5e-12 76.6 170 52.4
RcHm_v2.0_Chr5g0008291 Rosa chinensis HOM05D007781 ORTHO05D009769 4.5e-12 76.6 130 56.9
CANSAT35G1759 Cannabis sativa HOM05D007781 ORTHO05D009769 7.6e-12 75.9 87 77.0
PGR042G1810 Punica granatum HOM05D007781 ORTHO05D009769 7.6e-12 75.9 169 50.3
MD05G1313200 Malus domestica HOM05D007781 ORTHO05D009769 9.9e-12 75.5 108 63.0
CiPaw.09G059400 Carya illinoinensis HOM05D007781 ORTHO05D009769 1.7e-11 74.7 137 56.9
Ciclev10017149m.g Citrus clementina HOM05D007781 ORTHO05D009769 1.7e-11 74.7 139 56.1
FAN16G0963 Fragaria x ananassa HOM05D007781 ORTHO05D009769 1.7e-11 74.7 97 69.1
Prupe.4G046600 Prunus persica HOM05D007781 ORTHO05D009769 1.7e-11 74.7 114 64.0
DCAR_028076 Daucus carota HOM05D007781 ORTHO05D009769 2.2e-11 74.3 69 59.4
CDE10G1000 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 3.8e-11 73.6 173 51.4
ClCG03G006020 Citrullus lanatus HOM05D007781 ORTHO05D009769 3.8e-11 73.6 128 54.7
MD10G1295400 Malus domestica HOM05D007781 ORTHO05D009769 3.8e-11 73.6 165 51.5
THA.LOC104812795 Tarenaya hassleriana HOM05D007781 ORTHO05D009769 3.8e-11 73.6 86 76.7
CsaV3_1G012280 Cucumis sativus L. HOM05D007781 ORTHO05D009769 6.4e-11 72.8 128 55.5
Gohir.A05G161900 Gossypium hirsutum HOM05D007781 ORTHO05D009769 6.4e-11 72.8 98 64.3
Gohir.D05G164700 Gossypium hirsutum HOM05D007781 ORTHO05D009769 6.4e-11 72.8 98 64.3
Gorai.009G169900 Gossypium raimondii HOM05D007781 ORTHO05D009769 6.4e-11 72.8 93 64.5
Lj4g0009430 Lotus japonicus HOM05D007781 ORTHO05D009769 6.4e-11 72.8 86 74.4
Sc17g0006220 Simmondsia chinensis HOM05D007781 ORTHO05D009769 8.4e-11 72.4 92 70.7
GSVIVG01003209001 Vitis vinifera HOM05D007781 ORTHO05D009769 8.4e-11 72.4 86 74.4
Glyma.07G196200 Glycine max HOM05D007781 ORTHO05D009769 1.4e-10 71.6 88 71.6
Actinidia05631 Actinidia chinensis HOM05D007781 ORTHO05D009769 1.9e-10 71.2 95 71.6
CDE10G0168 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 1.9e-10 71.2 111 44.1
Migut.H01490 Erythranthe guttata HOM05D007781 ORTHO05D009769 1.9e-10 71.2 158 50.0
Phvul.002G234100 Phaseolus vulgaris HOM05D007781 ORTHO05D009769 1.9e-10 71.2 82 73.2
Sed0016416 Sechium edule HOM05D007781 ORTHO05D009769 1.9e-10 71.2 135 53.3
Oeu053970.1 Olea europaea HOM05D007781 ORTHO05D009769 4.2e-10 70.1 152 52.6
Eucgr.E03314 Eucalyptus grandis HOM05D007781 ORTHO05D009769 5.4e-10 69.7 123 55.3
Sp7g19740 Schrenkiella parvula HOM05D007781 ORTHO05D009769 7.1e-10 69.3 97 69.1
HPP92_027869 Vanilla planifolia HOM05D007781 ORTHO05D009769 7.1e-10 69.3 178 43.8
VMungo0251G3178 Vigna mungo HOM05D007781 ORTHO05D009769 7.1e-10 69.3 82 70.7
MELO3C002600.2 Cucumis melo HOM05D007781 ORTHO05D009769 1.2e-09 68.6 128 54.7
A08p15070 Brassica napus HOM05D007781 ORTHO05D009769 1.6e-09 68.2 94 70.2
Nn1g06568 Nelumbo nucifera HOM05D007781 ORTHO05D009769 1.6e-09 68.2 87 72.4
BcaB03g11687 Brassica carinata HOM05D001738 ORTHO05D001644 2.7e-09 67.4 86 76.7
C03p83160 Brassica napus HOM05D001541 ORTHO05D009769 2.7e-09 67.4 91 71.4
Potri.004G043100 Populus trichocarpa HOM05D007781 ORTHO05D009769 2.7e-09 67.4 95 70.5
CARHR228320 Cardamine hirsuta HOM05D007781 ORTHO05D009769 3.5e-09 67.0 86 70.9
SGA_v2.0_scaffold49G18292 Striga asiatica HOM05D007781 ORTHO05D009769 3.5e-09 67.0 155 51.0
Hund21227 Selenicereus undatus HOM05D007781 ORTHO05D009769 4.6e-09 66.6 92 69.6
COL.COLO4_31480 Corchorus olitorius HOM05D007781 ORTHO05D009769 6.0e-09 66.2 93 58.1
Psat7g113680 Pisum sativum HOM05D007781 ORTHO05D009769 6.0e-09 66.2 130 53.1
TPR.G12128 Trifolium pratense HOM05D007781 ORTHO05D009769 7.9e-09 65.9 135 51.9
Thhalv10026412m.g Eutrema salsugineum HOM05D007781 ORTHO05D009769 1.0e-08 65.5 85 74.1
Manes.16G027000 Manihot esculenta HOM05D007781 ORTHO05D009769 1.0e-08 65.5 85 71.8
BcaC01g00689 Brassica carinata HOM05D001738 ORTHO05D001644 1.8e-08 64.7 86 75.6
BolC3t20599H Brassica oleracea HOM05D007781 ORTHO05D009769 1.8e-08 64.7 86 75.6
Haze_06475 Corylus avellana HOM05D007781 ORTHO05D009769 2.3e-08 64.3 108 57.4
Lsat_1_v5_gn_7_21141 Lactuca sativa HOM05D007781 ORTHO05D009769 2.3e-08 64.3 125 58.4
Sabra04G0026700 Salix brachista HOM05D007781 ORTHO05D009769 2.3e-08 64.3 138 54.3
CSS0040858 Camellia sinensis var. sinensis HOM05D007781 ORTHO05D009769 1.1e-07 62.0 37 70.3
HanXRQChr04g0124061 Helianthus annuus HOM05D007781 ORTHO05D009769 1.1e-07 62.0 180 45.6
Lalb_Chr16g0383721 Lupinus albus HOM05D007781 ORTHO05D009769 2.5e-07 60.8 83 71.1
Carub.0007s1977 Capsella rubella HOM05D007781 ORTHO05D009769 3.3e-07 60.5 38 68.4
Medtr4g088850 Medicago truncatula HOM05D007781 ORTHO05D009769 3.3e-07 60.5 81 43.2
Aa31LG6G3610 Aethionema arabicum HOM05D007781 ORTHO05D009769 7.4e-07 59.3 151 47.7
AT4G21610 Arabidopsis thaliana HOM05D007781 ORTHO05D009769 9.6e-07 58.9 85 70.6
arahy.Tifrunner.gnm1.ann1.KV0YZV Arachis hypogaea HOM05D007781 ORTHO05D009769 9.6e-07 58.9 139 50.4
arahy.Tifrunner.gnm1.ann1.QC0LUE Arachis hypogaea HOM05D007781 ORTHO05D009769 9.6e-07 58.9 139 50.4
AL7G32390 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.3e-06 58.5 85 69.4
TWI38G0207 Tripterygium wilfordii HOM05D007781 ORTHO05D009769 1.3e-06 58.5 37 70.3
Os01g0612700 Oryza sativa ssp. japonica HOM05D021202 ORTHO05D009769 2.8e-06 57.4 152 48.7
Ah.14g089440 Amaranthus hybridus HOM05D007781 ORTHO05D009769 6.2e-06 56.2 36 69.4
Sed0017721 Sechium edule HOM05D007781 ORTHO05D009769 8.1e-06 55.8 64 43.8
vmacro00338 Vaccinium macrocarpon HOM05D007781 ORTHO05D002106 8.1e-06 55.8 39 59.0


User provided reference genes

Program Settings