Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g077690.4 Solanum lycopersicum HOM05D007447 ORTHO05D009372 1.8e-149 532.7 294 100.0
Sopen02g022590 Solanum pennellii HOM05D007447 ORTHO05D009372 7.2e-127 457.6 294 88.4
Nitab4.5_0001955g0160 Nicotiana tabacum HOM05D007447 ORTHO05D009372 2.7e-121 439.1 294 81.0
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 2.9e-99 365.9 274 73.7
CAN.G529.53 Capsicum annuum HOM05D007447 ORTHO05D009372 4.1e-82 308.9 192 80.7
Peaxi162Scf00926g00028 Petunia axillaris HOM05D007447 ORTHO05D009372 1.2e-81 307.4 294 63.9
Dinv40599 Davidia involucrata HOM05D007447 ORTHO05D009372 2.5e-63 246.5 296 49.7
QL05p042219 Quercus lobata HOM05D007447 ORTHO05D009372 2.7e-57 226.5 293 46.8
TAR627G0071 Trochodendron aralioides HOM05D007447 ORTHO05D009372 1.3e-56 224.2 298 47.7
GSVIVG01021110001 Vitis vinifera HOM05D007447 ORTHO05D009372 5.6e-55 218.8 243 47.7
MSTRG.14713 Avicennia marina HOM05D007447 ORTHO05D009372 9.6e-55 218.0 301 47.5
Thecc.06G181300 Theobroma cacao HOM05D007447 ORTHO05D009372 1.5e-52 210.7 296 43.6
Atru.chr10.1800 Acer truncatum HOM05D007447 ORTHO05D009372 3.8e-51 206.1 249 45.0
CSS0015196 Camellia sinensis var. sinensis HOM05D007447 ORTHO05D009372 4.9e-51 205.7 301 42.5
RcHm_v2.0_Chr5g0009131 Rosa chinensis HOM05D007447 ORTHO05D009372 6.4e-51 205.3 271 42.8
COL.COLO4_31413 Corchorus olitorius HOM05D001455 ORTHO05D001587 9.3e-50 201.4 259 44.0
PSO675G5366 Papaver somniferum HOM05D007447 ORTHO05D009372 7.9e-49 198.4 285 42.5
PSO675G8572 Papaver somniferum HOM05D007447 ORTHO05D009372 7.9e-49 198.4 285 42.5
CiPaw.10G052600 Carya illinoinensis HOM05D007447 ORTHO05D009372 1.3e-48 197.6 232 47.8
Migut.H01471 Erythranthe guttata HOM05D007447 ORTHO05D009372 2.3e-48 196.8 290 43.8
PGR042G0911 Punica granatum HOM05D007447 ORTHO05D009372 6.7e-48 195.3 294 41.5
FvH4_3g08660 Fragaria vesca HOM05D007447 ORTHO05D009372 8.7e-48 194.9 288 39.9
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 2.5e-47 193.4 252 42.9
TWI63G0216 Tripterygium wilfordii HOM05D007447 ORTHO05D009372 2.5e-47 193.4 257 42.0
Gohir.D10G028300 Gossypium hirsutum HOM05D007447 ORTHO05D009372 4.3e-47 192.6 259 41.7
Nn1g06424 Nelumbo nucifera HOM05D007447 ORTHO05D009372 5.6e-47 192.2 270 46.3
Cfa000525 Carpinus fangiana HOM05D007447 ORTHO05D009372 7.4e-47 191.8 284 44.7
Gorai.011G030100 Gossypium raimondii HOM05D007447 ORTHO05D009372 1.3e-46 191.0 259 40.9
FAN16G2340 Fragaria x ananassa HOM05D007447 ORTHO05D009372 3.7e-46 189.5 253 41.5
ClCG03G008020 Citrullus lanatus HOM05D007447 ORTHO05D009372 6.2e-46 188.7 264 40.9
Eucgr.E03244 Eucalyptus grandis HOM05D007447 ORTHO05D009372 8.1e-46 188.3 275 40.0
FAN11G2802 Fragaria x ananassa HOM05D007447 ORTHO05D009372 3.1e-45 186.4 260 41.5
unitig_61.g26088 Utricularia gibba HOM05D007447 ORTHO05D009372 6.9e-45 185.3 291 41.2
CsaV3_1G012550 Cucumis sativus L. HOM05D007447 ORTHO05D009372 1.5e-44 184.1 263 39.5
Aqoxy1G02279 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 4.9e-43 179.1 285 38.6
Manes.16G031900 Manihot esculenta HOM05D007447 ORTHO05D009372 4.9e-43 179.1 300 38.7
COL.COLO4_14300 Corchorus olitorius HOM05D001061 ORTHO05D006729 1.1e-42 177.9 257 41.2
Ciclev10018161m.g Citrus clementina HOM05D007447 ORTHO05D009372 5.5e-42 175.6 220 45.0
Cc02_g13820 Coffea canephora HOM05D007447 ORTHO05D009372 7.1e-42 175.3 258 43.0
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 1.6e-41 174.1 279 40.5
SalBow7G4252 Salvia bowleyana HOM05D007447 ORTHO05D009372 2.7e-41 173.3 244 41.4
SalBow7G4859 Salvia bowleyana HOM05D007447 ORTHO05D009372 2.7e-41 173.3 244 41.4
Actinidia07600 Actinidia chinensis HOM05D007447 ORTHO05D009372 1.8e-40 170.6 242 42.6
Hma1.2p1_0558F.1_g178510 Hydrangea macrophylla HOM05D007447 ORTHO05D009372 1.8e-40 170.6 174 50.6
Gohir.A05G159100 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.9e-40 169.5 253 39.5
vmacro15930 Vaccinium macrocarpon HOM05D007447 ORTHO05D009372 6.7e-40 168.7 300 36.7
DCAR_008005 Daucus carota HOM05D007447 ORTHO05D009372 1.5e-39 167.5 239 43.1
MD10G1289400 Malus domestica HOM05D007447 ORTHO05D009372 1.5e-39 167.5 292 37.3
Psat1g202800 Pisum sativum HOM05D007447 ORTHO05D009372 1.5e-39 167.5 248 39.5
HanXRQChr08g0213981 Helianthus annuus HOM05D007447 ORTHO05D009372 2.5e-39 166.8 253 41.1
Oeu012152.1 Olea europaea HOM05D007447 ORTHO05D009372 2.5e-39 166.8 243 42.8
Sed0019225 Sechium edule HOM05D007447 ORTHO05D009372 2.5e-39 166.8 289 38.1
VMungo0540G1135 Vigna mungo HOM05D007447 ORTHO05D009372 5.7e-39 165.6 249 37.8
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 9.6e-39 164.9 247 38.1
CANSAT35G0297 Cannabis sativa HOM05D007447 ORTHO05D009372 2.8e-38 163.3 260 40.0
Glyma.13G235800 Glycine max HOM05D007447 ORTHO05D009372 4.1e-37 159.5 276 38.8
arahy.Tifrunner.gnm1.ann1.MUCA0D Arachis hypogaea HOM05D007447 ORTHO05D009372 2.6e-36 156.8 248 38.7
arahy.Tifrunner.gnm1.ann1.45S4HY Arachis hypogaea HOM05D007447 ORTHO05D009372 4.5e-36 156.0 260 37.3
Duzib160G0617 Durio zibethinus HOM05D007447 ORTHO05D009372 7.6e-36 155.2 268 39.9
ECA248G3772 Erigeron canadensis HOM05D007447 ORTHO05D009372 7.6e-36 155.2 257 40.5
Cpa.g.sc27.6 Carica papaya HOM05D007447 ORTHO05D009372 1.4e-34 151.0 274 35.8
Medtr2g014440 Medicago truncatula HOM05D007447 ORTHO05D009372 2.5e-34 150.2 282 35.8
Thhalv10008438m.g Eutrema salsugineum HOM05D007447 ORTHO05D009372 2.7e-33 146.7 265 36.6
Phvul.006G182400 Phaseolus vulgaris HOM05D007447 ORTHO05D009372 2.7e-33 146.7 249 35.3
AT1G28410 Arabidopsis thaliana HOM05D007447 ORTHO05D009372 3.0e-32 143.3 267 36.7
Lj6g0005430 Lotus japonicus HOM05D007447 ORTHO05D009372 3.0e-32 143.3 262 35.5
Prupe.3G304000 Prunus persica HOM05D007447 ORTHO05D009372 3.0e-32 143.3 251 39.0
TPR.G11645 Trifolium pratense HOM05D007447 ORTHO05D009372 3.0e-32 143.3 186 41.4
Aqoxy193s001 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 6.7e-32 142.1 189 41.3
AL1G42040 Arabidopsis lyrata HOM05D007447 ORTHO05D009372 8.7e-32 141.7 266 37.2
Hund23805 Selenicereus undatus HOM05D007447 ORTHO05D009372 7.4e-31 138.7 292 32.5
Carub.0001s2689 Capsella rubella HOM05D007447 ORTHO05D009372 1.6e-30 137.5 265 33.6
CARHR027920 Cardamine hirsuta HOM05D007447 ORTHO05D009372 1.1e-29 134.8 261 34.9
Ca_00359_v3 Cicer arietinum L. HOM05D007447 ORTHO05D009372 1.4e-29 134.4 180 41.7
Sp1g24690 Schrenkiella parvula HOM05D007447 ORTHO05D009372 5.9e-28 129.0 227 36.6
Gohir.A09G104400 Gossypium hirsutum HOM05D007447 ORTHO05D009372 2.9e-27 126.7 207 35.7
Rhsim02G0134600 Rhododendron simsii HOM05D007447 ORTHO05D009372 2.9e-27 126.7 294 31.3
Ah.09g237570 Amaranthus hybridus HOM05D007447 ORTHO05D009372 5.0e-27 125.9 271 32.1
THA.LOC104814436 Tarenaya hassleriana HOM05D007447 ORTHO05D009372 7.2e-26 122.1 262 32.4
Lalb_Chr18g0059391 Lupinus albus HOM05D007447 ORTHO05D009372 1.2e-25 121.3 264 33.0
EL10Ac8g20436 Beta vulgaris HOM05D007447 ORTHO05D009372 3.0e-24 116.7 294 28.2
AUR62014866 Chenopodium quinoa HOM05D007447 ORTHO05D009372 2.6e-23 113.6 299 29.1
Gohir.A10G027900 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.3e-23 113.2 195 36.4
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 7.4e-23 112.1 233 33.0
MELO3C000075.2 Cucumis melo HOM05D007447 ORTHO05D009372 4.8e-22 109.4 145 42.1
A09p37630 Brassica napus HOM05D007447 ORTHO05D009372 6.9e-21 105.5 230 33.9
C05p27420 Brassica napus HOM05D007447 ORTHO05D009372 2.0e-20 104.0 232 30.6
BraA09t39273Z Brassica rapa HOM05D007447 ORTHO05D009372 2.0e-20 104.0 234 31.6
BolC5t31458H Brassica oleracea HOM05D007447 ORTHO05D009372 5.9e-20 102.4 221 32.1
BcaC05g26860 Brassica carinata HOM05D007447 ORTHO05D009372 1.7e-19 100.9 256 30.5
Lsat_1_v5_gn_1_120761 Lactuca sativa HOM05D007447 ORTHO05D009372 1.6e-17 94.4 207 33.8
MBI06_g04396_MAGBIO Magnolia biondii HOM05D007447 ORTHO05D009372 6.7e-16 89.0 262 30.9
ATR0730G049 Amborella trichopoda HOM05D007447 ORTHO05D009372 2.6e-15 87.0 215 29.8
CDE04G0034 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 4.8e-14 82.8 133 36.1
Potri.004G048500 Populus trichocarpa HOM05D007447 ORTHO05D009372 1.4e-13 81.3 122 41.8
Os02g0305600 Oryza sativa ssp. japonica HOM05D007447 ORTHO05D009372 7.0e-13 79.0 211 28.4
Zm00001eb203200 Zea mays HOM05D007447 ORTHO05D009372 1.6e-12 77.8 327 25.1
MELO3C027350.2 Cucumis melo HOM05D007447 ORTHO05D009372 2.7e-09 67.0 65 50.8
Gohir.A02G158500 Gossypium hirsutum HOM05D007447 ORTHO05D009372 9.7e-07 58.5 61 49.2
Gohir.A01G124600 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.7e-06 56.6 61 47.5
Gohir.A01G131222 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.7e-06 56.6 61 47.5


User provided reference genes

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