Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 2.6e-144 515.4 265 100.0
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 8.5e-135 483.8 251 98.8
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 5.2e-100 368.2 260 78.8
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 5.7e-99 364.8 249 79.9
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 1.1e-94 350.5 271 73.1
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 1.9e-94 349.7 251 76.1
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 1.6e-93 346.7 259 73.7
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 4.7e-93 345.1 182 96.2
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 1.0e-92 344.0 251 74.9
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 3.0e-92 342.4 264 73.1
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 1.2e-91 340.5 250 72.8
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 4.4e-91 338.6 252 76.6
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 1.3e-90 337.0 204 84.3
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 3.7e-90 335.5 251 74.5
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 4.9e-90 335.1 252 74.2
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 6.3e-90 334.7 251 73.3
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 8.3e-90 334.3 251 72.9
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 8.3e-90 334.3 250 72.8
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 1.4e-89 333.6 252 72.2
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 1.4e-89 333.6 251 74.1
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.4e-89 333.6 251 73.3
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 1.8e-89 333.2 251 73.3
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 2.4e-89 332.8 207 82.6
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 3.1e-89 332.4 247 73.3
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 4.1e-89 332.0 259 71.8
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 5.4e-89 331.6 253 72.7
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 7.0e-89 331.3 250 72.8
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 9.2e-89 330.9 254 72.0
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 1.2e-88 330.5 199 85.4
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 1.2e-88 330.5 224 78.6
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 1.6e-88 330.1 250 74.8
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 2.7e-88 329.3 257 72.4
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 3.5e-88 328.9 190 86.8
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 5.9e-88 328.2 246 72.8
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 5.9e-88 328.2 207 81.6
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 5.9e-88 328.2 246 72.0
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 5.9e-88 328.2 274 68.6
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 7.8e-88 327.8 213 81.2
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 1.0e-87 327.4 181 90.6
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 1.0e-87 327.4 266 69.5
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 1.3e-87 327.0 252 72.6
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 1.3e-87 327.0 218 80.3
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 1.3e-87 327.0 257 71.6
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 1.7e-87 326.6 191 86.9
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 1.7e-87 326.6 264 68.9
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 2.3e-87 326.2 247 72.9
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 3.9e-87 325.5 228 75.4
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 3.9e-87 325.5 253 72.3
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 5.0e-87 325.1 200 82.5
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 6.6e-87 324.7 196 83.2
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 6.6e-87 324.7 196 82.7
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 1.1e-86 323.9 222 76.6
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 1.5e-86 323.6 246 72.0
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 1.9e-86 323.2 201 81.1
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 1.9e-86 323.2 225 76.0
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 1.9e-86 323.2 244 73.4
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 2.5e-86 322.8 250 71.2
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 3.3e-86 322.4 277 65.7
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 3.3e-86 322.4 182 90.1
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 5.6e-86 321.6 237 73.0
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 5.6e-86 321.6 246 71.5
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 7.3e-86 321.2 251 70.1
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 9.5e-86 320.9 215 78.6
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 1.2e-85 320.5 188 86.7
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 1.6e-85 320.1 213 78.9
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 1.6e-85 320.1 250 70.4
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 2.1e-85 319.7 188 85.1
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 2.1e-85 319.7 188 85.1
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 2.8e-85 319.3 189 84.1
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 1.4e-84 317.0 256 70.7
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 1.4e-84 317.0 224 72.8
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 1.8e-84 316.6 201 81.1
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 3.1e-84 315.8 251 70.1
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 3.4e-83 312.4 222 73.4
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 3.4e-83 312.4 181 87.3
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 1.3e-82 310.5 195 82.6
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 1.3e-82 310.5 284 64.8
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 2.9e-82 309.3 182 84.1
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 1.1e-81 307.4 182 85.2
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 7.0e-81 304.7 192 80.2
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 1.5e-78 297.0 170 87.1
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 2.8e-77 292.7 189 78.8
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 6.2e-77 291.6 253 69.6
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 1.2e-75 287.3 199 75.4
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 2.9e-74 282.7 182 76.4
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 8.3e-74 281.2 177 81.9
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 1.7e-66 256.9 191 69.6
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 4.1e-65 252.3 162 80.9
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 2.1e-64 250.0 189 66.1
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 8.6e-63 244.6 206 67.0
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 1.1e-62 244.2 224 64.3
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 2.5e-62 243.0 284 54.9
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.6e-61 240.4 296 53.7
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 2.1e-61 240.0 194 62.9
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 1.2e-59 234.2 247 59.9
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 3.8e-58 229.2 217 60.4
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 2.4e-57 226.5 149 75.8
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 2.1e-56 223.4 204 62.7
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 3.9e-55 219.2 201 63.7
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 5.6e-54 215.3 254 55.9
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.6e-53 213.8 176 67.6
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.1e-52 211.1 181 64.6
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 1.8e-52 210.3 181 65.2
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 2.9e-50 203.0 187 63.1
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 8.4e-50 201.4 235 57.4
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 1.5e-46 190.7 227 53.7
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 1.5e-46 190.7 227 53.7
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 1.5e-46 190.7 227 53.7
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 3.4e-43 179.5 155 69.7
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 2.4e-41 173.3 158 65.8
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 5.6e-38 162.2 228 49.6
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 1.4e-33 147.5 181 54.1
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 1.3e-26 124.4 96 70.8
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 5.0e-26 122.5 94 71.3
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 6.5e-26 122.1 124 57.3
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 2.5e-25 120.2 74 74.3
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 5.5e-25 119.0 67 89.6
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 2.7e-24 116.7 92 66.3
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 1.9e-22 110.5 86 65.1
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 5.0e-18 95.9 62 75.8
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 8.5e-18 95.1 52 92.3
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 1.9e-17 94.0 53 90.6
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 4.2e-17 92.8 51 90.2
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 2.5e-09 67.0 73 47.9


User provided reference genes

Program Settings