Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 2.1e-149 532.3 270 100.0
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 3.2e-145 518.5 270 97.0
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 8.6e-143 510.4 270 95.6
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 2.0e-131 472.6 270 88.1
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 3.4e-131 471.9 270 88.1
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 3.2e-129 465.3 270 87.0
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 1.3e-127 459.9 270 84.8
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 3.6e-125 451.8 270 83.3
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 4.7e-125 451.4 254 87.8
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.5e-123 446.4 250 88.0
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 7.4e-102 374.4 267 70.4
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 4.5e-99 365.2 266 68.0
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 7.6e-99 364.4 268 68.3
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 4.9e-98 361.7 270 67.4
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 6.5e-98 361.3 206 86.9
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 3.2e-97 359.0 267 68.9
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 9.3e-97 357.5 266 66.9
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 4.6e-96 355.1 267 67.8
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 2.5e-94 349.4 267 67.0
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.5e-94 349.4 267 66.3
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 3.3e-94 349.0 267 67.4
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 5.7e-94 348.2 270 67.4
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 7.4e-94 347.8 267 67.4
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 7.4e-94 347.8 267 67.4
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 7.4e-94 347.8 265 65.7
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 7.4e-94 347.8 266 65.8
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 7.4e-94 347.8 266 65.4
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 9.6e-94 347.4 269 66.9
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 9.6e-94 347.4 267 65.9
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.6e-93 346.7 241 72.2
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 2.1e-93 346.3 266 64.7
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 4.8e-93 345.1 267 65.2
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 4.8e-93 345.1 239 69.0
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 6.2e-93 344.7 238 72.3
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 8.2e-93 344.4 241 72.6
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 2.4e-92 342.8 229 72.9
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 3.1e-92 342.4 236 73.3
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 4.1e-92 342.0 203 81.3
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 4.1e-92 342.0 239 69.5
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 5.3e-92 341.7 267 64.0
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 5.3e-92 341.7 232 71.6
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 6.9e-92 341.3 265 63.8
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 6.9e-92 341.3 265 64.5
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 2.0e-91 339.7 239 69.0
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 2.0e-91 339.7 272 63.6
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 2.6e-91 339.3 215 75.3
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 3.4e-91 339.0 240 69.2
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 3.4e-91 339.0 239 69.5
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 4.5e-91 338.6 215 74.9
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 7.6e-91 337.8 268 64.9
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 7.6e-91 337.8 231 71.4
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 1.0e-90 337.4 268 63.1
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 1.3e-90 337.0 234 69.2
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 1.3e-90 337.0 263 64.3
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 1.7e-90 336.7 206 77.7
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 1.7e-90 336.7 271 63.8
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 3.8e-90 335.5 196 88.8
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 5.0e-90 335.1 249 66.3
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 5.0e-90 335.1 229 71.6
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 6.5e-90 334.7 210 77.6
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 8.4e-90 334.3 247 67.6
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 8.4e-90 334.3 268 63.8
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 1.1e-89 334.0 267 65.5
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 1.4e-89 333.6 204 77.9
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 1.4e-89 333.6 239 68.6
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 1.4e-89 333.6 239 68.6
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 1.4e-89 333.6 239 68.6
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 1.4e-89 333.6 247 67.2
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 1.4e-89 333.6 227 71.4
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 1.9e-89 333.2 255 65.9
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 2.5e-89 332.8 204 79.4
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 5.5e-89 331.6 226 69.9
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 9.3e-89 330.9 245 69.0
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 9.3e-89 330.9 204 76.5
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 9.3e-89 330.9 232 70.3
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 1.2e-88 330.5 241 66.8
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.2e-88 330.5 243 69.5
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.2e-88 330.5 243 69.5
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 2.1e-88 329.7 231 69.3
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 2.1e-88 329.7 228 71.5
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 2.7e-88 329.3 234 69.2
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 2.7e-88 329.3 268 62.3
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 7.9e-88 327.8 216 72.7
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 1.3e-87 327.0 223 71.7
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 3.0e-87 325.9 239 67.8
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 1.9e-86 323.2 241 63.9
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 7.4e-86 321.2 204 75.0
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 1.3e-85 320.5 233 67.8
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.2e-85 319.7 244 63.5
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 2.2e-85 319.7 242 65.3
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 2.2e-85 319.7 263 60.1
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.8e-85 319.3 244 63.5
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 2.8e-85 319.3 268 62.3
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 6.3e-85 318.2 240 65.0
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 6.3e-85 318.2 259 60.6
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 6.3e-85 318.2 243 63.4
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 8.2e-85 317.8 268 61.9
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 1.8e-84 316.6 241 66.4
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 4.1e-84 315.5 241 65.1
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 5.3e-84 315.1 246 64.6
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 1.2e-83 313.9 234 67.1
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.1e-81 307.4 232 68.1
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 2.5e-81 306.2 232 67.7
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 4.2e-81 305.4 245 64.1
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 6.1e-80 301.6 193 74.6
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 5.1e-79 298.5 241 62.7
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 9.7e-78 294.3 226 63.7
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 6.3e-77 291.6 206 67.5
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 2.6e-75 286.2 202 68.3
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 3.4e-75 285.8 207 66.7
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 5.0e-74 282.0 251 57.8
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 4.2e-73 278.9 249 59.8
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 1.2e-72 277.3 256 57.4
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 5.1e-71 271.9 249 55.4
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 8.2e-69 264.6 213 61.0
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 1.4e-63 247.3 215 61.4
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.1e-62 244.2 179 69.3
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 4.5e-59 232.3 211 55.0
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 5.9e-59 231.9 232 50.9
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 1.2e-56 224.2 205 51.7
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 6.1e-56 221.9 209 53.6
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 1.6e-51 207.2 209 51.2
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 1.7e-50 203.8 227 44.1
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 8.5e-50 201.4 205 53.7
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 8.5e-50 201.4 119 76.5
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 2.7e-48 196.4 194 56.7
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 2.0e-46 190.3 237 38.4
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.1e-44 184.5 109 80.7
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 6.8e-39 165.2 212 40.6
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 2.5e-33 146.7 102 71.6
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 1.4e-31 141.0 134 59.0
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.8e-31 140.6 130 57.7
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 2.5e-25 120.2 88 70.5
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 3.6e-24 116.3 104 55.8
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 1.3e-21 107.8 167 35.9
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 5.6e-17 92.4 78 64.1
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 3.2e-12 76.6 100 45.0
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 3.2e-12 76.6 252 32.1
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 2.3e-10 70.5 44 75.0
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 4.7e-08 62.8 60 56.7


User provided reference genes

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