Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g076650.1 Solanum lycopersicum HOM05D000828 ORTHO05D000623 4.6e-22 107.1 57 100.0
Solyc02g073580.1 Solanum lycopersicum HOM05D000828 ORTHO05D000623 6.5e-16 86.7 47 95.7
Sopen02g021570 Solanum pennellii HOM05D000828 ORTHO05D000623 6.5e-16 86.7 47 95.7
PGSC0003DMG400010193 Solanum tuberosum HOM05D000828 ORTHO05D000623 8.5e-16 86.3 54 83.3
CAN.G370.94 Capsicum annuum HOM05D000828 ORTHO05D000623 2.1e-14 81.6 47 87.2
Peaxi162Scf00768g00031 Petunia axillaris HOM05D000828 ORTHO05D000623 1.5e-12 75.5 45 84.4
Nitab4.5_0008430g0040 Nicotiana tabacum HOM05D000828 ORTHO05D000623 3.3e-12 74.3 57 71.9
Nitab4.5_0000605g0060 Nicotiana tabacum HOM05D000828 ORTHO05D000623 4.3e-12 73.9 54 74.1
Migut.M01028 Erythranthe guttata HOM05D000828 ORTHO05D000623 5.7e-12 73.6 48 72.9
CSS0004670 Camellia sinensis var. sinensis HOM05D000828 ORTHO05D000623 1.3e-11 72.4 44 79.5
CSS0046843 Camellia sinensis var. sinensis HOM05D000828 ORTHO05D000623 1.3e-11 72.4 44 79.5
Cc02_g15140 Coffea canephora HOM05D000828 ORTHO05D000623 1.7e-11 72.0 44 77.3
Oeu039906.1 Olea europaea HOM05D000828 ORTHO05D000623 2.4e-10 68.2 44 72.7
Hma1.2p1_0215F.1_g090870 Hydrangea macrophylla HOM05D000828 ORTHO05D000623 6.9e-10 66.6 44 75.0
SalBow7G2701 Salvia bowleyana HOM05D000828 ORTHO05D000623 6.9e-10 66.6 44 77.3
TAR624G1056 Trochodendron aralioides HOM05D000828 ORTHO05D000623 9.1e-10 66.2 46 69.6
Duzib235G1498 Durio zibethinus HOM05D000828 ORTHO05D000623 1.2e-09 65.9 44 72.7
Gohir.D10G037000 Gossypium hirsutum HOM05D000828 ORTHO05D000623 1.2e-09 65.9 44 72.7
Gorai.011G038900 Gossypium raimondii HOM05D000828 ORTHO05D000623 1.2e-09 65.9 44 72.7
Thecc.06G168900 Theobroma cacao HOM05D000828 ORTHO05D000623 1.2e-09 65.9 44 72.7
PGR031G0305 Punica granatum HOM05D000828 ORTHO05D000623 2.0e-09 65.1 50 62.0
SalBow8G1411 Salvia bowleyana HOM05D000828 ORTHO05D000623 2.0e-09 65.1 44 70.5
COL.COLO4_31276 Corchorus olitorius HOM05D000828 ORTHO05D000623 2.6e-09 64.7 44 70.5
QL05p047746 Quercus lobata HOM05D000828 ORTHO05D000623 2.6e-09 64.7 44 72.7
Gohir.A10G036300 Gossypium hirsutum HOM05D000828 ORTHO05D000623 3.4e-09 64.3 44 70.5
Potri.004G058200 Populus trichocarpa HOM05D000828 ORTHO05D000623 3.4e-09 64.3 44 68.2
TWI38G0070 Tripterygium wilfordii HOM05D000828 ORTHO05D000623 5.9e-09 63.5 42 76.2
PSO541G3344 Papaver somniferum HOM05D000828 ORTHO05D000623 7.7e-09 63.2 44 68.2
Prupe.4G062700 Prunus persica HOM05D000828 ORTHO05D000623 7.7e-09 63.2 44 68.2
CiPaw.10G060100 Carya illinoinensis HOM05D000828 ORTHO05D000623 1.0e-08 62.8 44 72.7
FAN16G0165 Fragaria x ananassa HOM05D000828 ORTHO05D000623 1.0e-08 62.8 53 58.5
FAN21G2654 Fragaria x ananassa HOM05D000828 ORTHO05D000623 1.0e-08 62.8 53 58.5
FAN25G1080 Fragaria x ananassa HOM05D000828 ORTHO05D000623 1.0e-08 62.8 53 58.5
Lj1P1191T47 Lonicera japonica HOM05D000828 ORTHO05D000623 1.0e-08 62.8 44 70.5
AT4G18650 Arabidopsis thaliana HOM05D000828 ORTHO05D000623 1.3e-08 62.4 46 63.0
FvH4_3g07650 Fragaria vesca HOM05D000828 ORTHO05D000623 1.3e-08 62.4 56 58.9
FAN11G4025 Fragaria x ananassa HOM05D000828 ORTHO05D000623 1.3e-08 62.4 56 58.9
Nn1g09159 Nelumbo nucifera HOM05D000828 ORTHO05D000623 1.3e-08 62.4 47 63.8
Cpa.g.sc7.81 Carica papaya HOM05D000828 ORTHO05D000623 1.7e-08 62.0 47 63.8
Migut.H01436 Erythranthe guttata HOM05D000828 ORTHO05D000623 1.7e-08 62.0 46 60.9
RcHm_v2.0_Chr5g0011031 Rosa chinensis HOM05D000828 ORTHO05D000623 1.7e-08 62.0 53 58.5
GSVIVG01021229001 Vitis vinifera HOM05D000828 ORTHO05D000623 1.7e-08 62.0 44 68.2
Glyma.15G083900 Glycine max HOM05D000828 ORTHO05D000623 2.2e-08 61.6 44 63.6
Sc05g0007040 Simmondsia chinensis HOM05D000828 ORTHO05D000623 2.2e-08 61.6 46 63.0
VMungo0540G1747 Vigna mungo HOM05D000828 ORTHO05D000623 2.2e-08 61.6 44 65.9
ECA236G2252 Erigeron canadensis HOM05D000828 ORTHO05D000623 2.9e-08 61.2 44 65.9
HanXRQChr04g0116961 Helianthus annuus HOM05D000828 ORTHO05D000623 2.9e-08 61.2 49 61.2
MD10G1044600 Malus domestica HOM05D000828 ORTHO05D000623 2.9e-08 61.2 44 68.2
PSO675G0520 Papaver somniferum HOM05D000828 ORTHO05D000623 2.9e-08 61.2 44 65.9
Lsat_1_v5_gn_7_25200 Lactuca sativa HOM05D000828 ORTHO05D000623 3.8e-08 60.8 44 65.9
CARHR225510 Cardamine hirsuta HOM05D000828 ORTHO05D000623 5.0e-08 60.5 45 62.2
Thhalv10027388m.g Eutrema salsugineum HOM05D000828 ORTHO05D000623 5.0e-08 60.5 46 58.7
Glyma.13G228600 Glycine max HOM05D000828 ORTHO05D000623 5.0e-08 60.5 44 63.6
MD05G1299100 Malus domestica HOM05D000828 ORTHO05D000623 5.0e-08 60.5 44 68.2
Psat1g197080 Pisum sativum HOM05D000828 ORTHO05D000623 5.0e-08 60.5 44 63.6
Aqoxy1G02032 Aquilegia oxysepala HOM05D000828 ORTHO05D000623 8.5e-08 59.7 43 67.4
AL7G35610 Arabidopsis lyrata HOM05D000828 ORTHO05D000623 8.5e-08 59.7 44 63.6
AUR62027695 Chenopodium quinoa HOM05D000828 ORTHO05D000623 1.1e-07 59.3 44 63.6
Ca_00445_v3 Cicer arietinum L. HOM05D000828 ORTHO05D000623 1.1e-07 59.3 44 63.6
Ciclev10017869m.g Citrus clementina HOM05D000828 ORTHO05D000623 1.4e-07 58.9 42 69.0
Nn1g04459 Nelumbo nucifera HOM05D000828 ORTHO05D000623 1.9e-07 58.5 51 62.7
EL10Ac8g20585 Beta vulgaris HOM05D000828 ORTHO05D000623 2.5e-07 58.2 44 63.6
Phvul.006G175000 Phaseolus vulgaris HOM05D000828 ORTHO05D000623 2.5e-07 58.2 58 51.7
Carub.0007s2257 Capsella rubella HOM05D000828 ORTHO05D000623 3.2e-07 57.8 44 61.4
Aa31LG6G1400 Aethionema arabicum HOM05D000828 ORTHO05D000623 4.2e-07 57.4 44 61.4
A01p10690 Brassica napus HOM05D000828 ORTHO05D000623 4.2e-07 57.4 44 59.1
C01p12620 Brassica napus HOM05D000828 ORTHO05D000623 4.2e-07 57.4 44 59.1
BolC1t01239H Brassica oleracea HOM05D000828 ORTHO05D000623 4.2e-07 57.4 44 59.1
BraA01t01015Z Brassica rapa HOM05D000828 ORTHO05D000623 4.2e-07 57.4 44 59.1
Lj6g0001029 Lotus japonicus HOM05D000828 ORTHO05D000623 4.2e-07 57.4 52 50.0
TPR.G27338 Trifolium pratense HOM05D000828 ORTHO05D000623 5.5e-07 57.0 44 59.1
Atru.chr10.1648 Acer truncatum HOM05D000828 ORTHO05D000623 7.2e-07 56.6 44 61.4
Atru.chr10.1647 Acer truncatum HOM05D000828 ORTHO05D000623 9.4e-07 56.2 44 61.4
MD05G1073300 Malus domestica HOM05D000828 ORTHO05D000623 9.4e-07 56.2 43 65.1
Lalb_Chr15g0086121 Lupinus albus HOM05D000828 ORTHO05D000623 1.6e-06 55.5 57 47.4
Lalb_Chr18g0054581 Lupinus albus HOM05D000828 ORTHO05D000623 1.6e-06 55.5 47 53.2
Manes.17G056900 Manihot esculenta HOM05D000828 ORTHO05D000623 1.6e-06 55.5 42 59.5
Medtr2g016330 Medicago truncatula HOM05D000828 ORTHO05D000623 2.7e-06 54.7 44 59.1
Medtr2g016370 Medicago truncatula HOM05D000828 ORTHO05D000623 2.7e-06 54.7 44 59.1
ClCG03G007620 Citrullus lanatus HOM05D000828 ORTHO05D000623 3.6e-06 54.3 44 59.1
arahy.Tifrunner.gnm1.ann1.DXWW21 Arachis hypogaea HOM05D000828 ORTHO05D000623 4.7e-06 53.9 44 56.8
Sp7g17390 Schrenkiella parvula HOM05D000828 ORTHO05D000623 4.7e-06 53.9 44 54.5
Sabra04G0037800 Salix brachista HOM05D000828 ORTHO05D000623 6.1e-06 53.5 34 73.5


User provided reference genes

Program Settings