Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 5.3e-230 800.8 446 100.0
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 9.3e-227 790.0 446 98.2
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 7.1e-219 763.8 446 94.4
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 1.4e-174 616.7 464 80.2
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.4e-161 573.5 460 72.0
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 7.8e-157 557.8 448 74.8
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 7.3e-155 551.2 454 70.7
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 7.6e-112 408.3 459 54.9
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 6.4e-111 405.2 463 56.4
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 3.3e-107 392.9 482 54.1
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 4.8e-106 389.0 331 65.3
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 1.4e-105 387.5 464 55.6
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 5.3e-105 385.6 464 51.3
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 1.2e-104 384.4 458 53.5
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 2.1e-101 373.6 478 50.2
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 2.1e-101 373.6 456 52.0
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 3.5e-101 372.9 332 61.1
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 6.0e-101 372.1 469 50.7
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 7.9e-101 371.7 459 51.0
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 2.3e-100 370.2 461 50.8
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 1.6e-98 364.0 463 51.4
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 1.6e-98 364.0 464 48.9
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 1.6e-98 364.0 457 53.6
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 6.2e-98 362.1 333 61.6
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.8e-97 360.5 511 46.6
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 3.1e-97 359.8 459 49.2
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 5.3e-97 359.0 350 58.6
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 9.0e-97 358.2 464 50.9
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 9.0e-97 358.2 469 50.5
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 4.5e-96 355.9 458 50.9
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 4.5e-96 355.9 459 49.2
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 5.8e-96 355.5 333 61.6
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 5.8e-96 355.5 462 49.6
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 1.0e-95 354.8 483 47.2
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 4.9e-95 352.4 461 51.4
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 1.9e-94 350.5 447 51.0
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 5.5e-94 349.0 448 50.9
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 2.7e-93 346.7 470 50.6
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 4.6e-93 345.9 492 45.5
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 6.1e-93 345.5 454 50.9
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 1.3e-92 344.4 331 59.5
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 1.3e-92 344.4 462 51.1
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 1.8e-92 344.0 452 49.8
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 9.7e-91 338.2 466 49.6
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 1.3e-90 337.8 458 50.9
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 4.8e-90 335.9 454 49.1
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 8.2e-90 335.1 330 57.9
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 8.2e-90 335.1 478 46.7
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 1.8e-89 334.0 456 50.4
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 3.1e-89 333.2 460 47.2
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 4.5e-88 329.3 331 58.3
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 1.7e-87 327.4 522 44.6
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 6.5e-87 325.5 454 47.8
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 8.5e-87 325.1 455 49.5
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 1.4e-86 324.3 456 48.7
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 2.5e-86 323.6 284 65.5
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 4.2e-86 322.8 462 45.9
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 5.5e-86 322.4 483 44.9
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 2.1e-85 320.5 453 46.8
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 4.6e-85 319.3 410 48.3
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 1.5e-83 314.3 465 44.7
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 2.0e-83 313.9 462 47.4
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 7.4e-83 312.0 400 49.2
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 1.7e-82 310.8 466 45.1
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 3.1e-81 306.6 445 45.2
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 4.1e-81 306.2 317 57.4
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 9.1e-81 305.1 465 47.3
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 1.2e-80 304.7 454 45.6
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 2.6e-80 303.5 455 46.8
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 5.0e-79 299.3 499 43.5
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.2e-77 294.7 321 53.0
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 3.6e-77 293.1 457 45.3
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 3.6e-77 293.1 321 53.3
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 3.6e-77 293.1 412 45.6
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 7.9e-77 292.0 315 54.9
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.4e-76 291.2 456 44.3
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 1.4e-76 291.2 477 41.7
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 1.8e-76 290.8 320 53.1
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 3.0e-76 290.0 451 44.3
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 2.6e-75 287.0 312 54.5
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 1.8e-73 280.8 463 43.2
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 5.3e-73 279.3 615 36.4
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 9.1e-73 278.5 326 50.9
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 1.2e-72 278.1 402 46.0
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.6e-72 276.9 318 51.6
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 1.1e-70 271.6 402 44.0
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 3.2e-70 270.0 271 57.2
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 7.2e-70 268.9 335 51.3
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 9.4e-70 268.5 280 53.9
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 1.6e-69 267.7 246 61.4
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 1.0e-68 265.0 314 53.8
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 1.8e-68 264.2 269 55.8
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 2.6e-67 260.4 271 55.0
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 3.3e-67 260.0 306 50.3
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 5.7e-67 259.2 272 54.8
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 5.7e-67 259.2 217 63.1
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 5.7e-67 259.2 217 63.1
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 3.7e-66 256.5 263 55.1
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 3.7e-66 256.5 307 50.2
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 8.2e-66 255.4 448 41.1
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 1.4e-65 254.6 312 50.0
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 1.8e-65 254.2 308 48.4
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.8e-65 254.2 338 48.2
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 5.3e-65 252.7 436 42.4
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 2.0e-64 250.8 233 59.2
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.6e-64 250.4 266 54.1
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 4.5e-64 249.6 269 53.5
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 1.0e-63 248.4 309 49.2
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 2.2e-63 247.3 367 49.0
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 2.9e-63 246.9 236 57.6
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.2e-61 241.5 322 46.6
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 7.5e-59 232.3 190 64.2
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 1.8e-57 227.6 246 54.1
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 3.5e-56 223.4 251 52.6
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 1.2e-51 208.4 319 46.7
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 1.4e-49 201.4 323 44.3
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 5.4e-49 199.5 325 44.3
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 2.0e-48 197.6 189 58.7
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 2.5e-46 190.7 402 38.1
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 4.2e-46 189.9 200 56.5
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 7.2e-46 189.1 373 38.9
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 1.4e-44 184.9 219 52.5
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 2.3e-44 184.1 195 55.4
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 4.4e-43 179.9 373 37.3
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 1.3e-42 178.3 194 52.6
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 9.2e-41 172.2 457 32.8
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 1.0e-39 168.7 315 41.0
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 8.6e-39 165.6 205 52.2
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 8.6e-39 165.6 221 49.8
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 1.9e-38 164.5 152 62.5
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 6.1e-37 159.5 199 47.7
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 1.2e-35 155.2 134 63.4
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.9e-34 150.6 107 72.9
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 3.7e-34 150.2 105 74.3
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 8.3e-34 149.1 155 52.3
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 7.8e-32 142.5 151 51.0
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.0e-31 140.6 70 94.3
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 1.2e-29 135.2 140 54.3
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.5e-27 128.3 258 39.9
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 1.5e-27 128.3 184 45.1
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 7.5e-27 125.9 114 57.9
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.3e-26 125.2 72 81.9
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 4.9e-26 123.2 72 80.6
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 4.6e-24 116.7 265 36.2
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 5.1e-23 113.2 70 75.7
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 5.1e-23 113.2 278 35.6
SalBow5G5526 Salvia bowleyana HOM05D004030 ORTHO05D004952 4.0e-20 103.6 258 34.5
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 4.4e-19 100.1 88 53.4
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 6.4e-18 96.3 90 51.1
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.5e-16 90.5 106 47.2
Ah.16g108870 Amaranthus hybridus HOM05D004030 ORTHO05D004952 6.6e-15 86.3 264 34.5
Ah.16g108300 Amaranthus hybridus HOM05D004030 ORTHO05D004952 8.6e-15 85.9 264 34.5
Ah.16g108330 Amaranthus hybridus HOM05D004030 ORTHO05D004952 8.6e-15 85.9 264 34.5
Ah.16g108890 Amaranthus hybridus HOM05D004030 ORTHO05D004952 7.3e-14 82.8 271 33.2
Lalb_Chr15g0086171 Lupinus albus HOM05D004030 ORTHO05D004952 2.4e-12 77.8 82 53.7
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 2.4e-12 77.8 176 35.2
Cpa.g.sc7.86 Carica papaya HOM05D004030 ORTHO05D033917 2.6e-11 74.3 160 34.4
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 4.9e-10 70.1 100 37.0
SalBow5G0967 Salvia bowleyana HOM05D004030 ORTHO05D004952 4.6e-08 63.5 72 50.0
TPR.G16979 Trifolium pratense HOM05D004030 ORTHO05D004952 1.7e-07 61.6 43 65.1


User provided reference genes

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