Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g072260.4 Solanum lycopersicum HOM05D008010 ORTHO05D010085 8.1e-138 493.8 263 100.0
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 1.8e-108 396.4 231 93.5
Sopen02g021240 Solanum pennellii HOM05D008010 ORTHO05D010085 3.1e-105 385.6 222 96.4
CAN.G411.60 Capsicum annuum HOM05D008010 ORTHO05D010085 1.8e-89 333.2 226 83.2
Nitab4.5_0008462g0010 Nicotiana tabacum HOM05D008010 ORTHO05D010085 1.4e-84 317.0 223 81.2
Nitab4.5_0002185g0010 Nicotiana tabacum HOM05D008010 ORTHO05D010085 2.3e-84 316.2 226 80.5
Peaxi162Scf00371g00017 Petunia axillaris HOM05D008010 ORTHO05D010085 7.7e-80 301.2 231 77.1
Dinv12764 Davidia involucrata HOM05D008010 ORTHO05D010085 7.3e-38 161.8 234 50.0
GSVIVG01021245001 Vitis vinifera HOM05D008010 ORTHO05D010085 2.1e-37 160.2 232 48.7
Cc02_g15430 Coffea canephora HOM05D008010 ORTHO05D010085 1.8e-28 130.6 242 43.0
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 3.4e-27 126.3 245 40.8
DCAR_027988 Daucus carota HOM05D008010 ORTHO05D010085 7.1e-25 118.6 238 42.0
PGR031G1466 Punica granatum HOM05D008010 ORTHO05D010085 7.1e-25 118.6 243 41.6
Manes.16G041900 Manihot esculenta HOM05D008010 ORTHO05D010085 9.3e-25 118.2 246 41.5
Cfa000638 Carpinus fangiana HOM05D008010 ORTHO05D010085 1.2e-24 117.9 264 38.6
Nn3g21124 Nelumbo nucifera HOM05D008010 ORTHO05D010085 1.0e-23 114.8 234 41.5
Sabra11G0057100 Salix brachista HOM05D008010 ORTHO05D010085 1.3e-23 114.4 210 41.9
Eucgr.D00477 Eucalyptus grandis HOM05D008010 ORTHO05D010085 5.1e-23 112.5 236 41.5
CiPaw.09G071800 Carya illinoinensis HOM05D008010 ORTHO05D010085 2.5e-22 110.2 250 38.8
FAN21G0683 Fragaria x ananassa HOM05D008010 ORTHO05D010085 3.3e-22 109.8 253 39.5
CDE03G0033 Ceratophyllum demersum HOM05D008010 ORTHO05D010085 4.3e-22 109.4 274 36.1
Potri.011G069300 Populus trichocarpa HOM05D008010 ORTHO05D010085 4.3e-22 109.4 168 47.0
Haze_06192 Corylus avellana HOM05D008010 ORTHO05D010085 7.3e-22 108.6 231 39.8
Atru.chr10.1588_Atru.chr10.1589 Acer truncatum HOM05D008010 ORTHO05D010085 2.8e-21 106.7 201 42.8
Thecc.06G167300 Theobroma cacao HOM05D008010 ORTHO05D010085 2.8e-21 106.7 211 39.3
Cpa.g.sc7.102 Carica papaya HOM05D008010 ORTHO05D010085 3.6e-21 106.3 251 38.2
FvH4_3g07440 Fragaria vesca HOM05D008010 ORTHO05D010085 8.1e-21 105.1 202 45.0
Migut.M01016 Erythranthe guttata HOM05D008010 ORTHO05D010085 1.1e-20 104.8 199 41.7
FAN25G1163 Fragaria x ananassa HOM05D008010 ORTHO05D010085 1.4e-20 104.4 202 44.6
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 2.4e-20 103.6 230 40.9
Lsat_1_v5_gn_1_109280 Lactuca sativa HOM05D008010 ORTHO05D010085 4.0e-20 102.8 228 39.0
Potri.004G059300 Populus trichocarpa HOM05D008010 ORTHO05D010085 4.0e-20 102.8 188 43.6
Prupe.4G065300 Prunus persica HOM05D008010 ORTHO05D010085 5.3e-20 102.4 218 40.8
QL05p048352 Quercus lobata HOM05D008010 ORTHO05D010085 9.0e-20 101.7 295 33.6
FAN16G3557 Fragaria x ananassa HOM05D008010 ORTHO05D010085 3.4e-19 99.8 166 46.4
Gohir.A06G132400 Gossypium hirsutum HOM05D008010 ORTHO05D010085 9.9e-19 98.2 213 38.5
Gorai.010G160200 Gossypium raimondii HOM05D008010 ORTHO05D010085 1.7e-18 97.4 213 38.0
Ciclev10016384m.g Citrus clementina HOM05D008010 ORTHO05D010085 2.9e-18 96.7 226 37.2
RcHm_v2.0_Chr5g0011411 Rosa chinensis HOM05D008010 ORTHO05D010085 2.9e-18 96.7 211 41.2
ClCG03G007530 Citrullus lanatus HOM05D008010 ORTHO05D010085 4.9e-18 95.9 272 35.3
THA.LOC104806163 Tarenaya hassleriana HOM05D008010 ORTHO05D010085 8.4e-18 95.1 207 39.1
Gohir.D06G137900 Gossypium hirsutum HOM05D008010 ORTHO05D010085 3.2e-17 93.2 213 37.1
AT4G18740 Arabidopsis thaliana HOM05D008010 ORTHO05D010085 7.1e-17 92.0 213 37.6
MD05G1297000 Malus domestica HOM05D008010 ORTHO05D010085 1.2e-16 91.3 232 34.9
CARHR225590 Cardamine hirsuta HOM05D008010 ORTHO05D010085 2.7e-16 90.1 205 39.5
Lalb_Chr18g0054681 Lupinus albus HOM05D008010 ORTHO05D010085 6.0e-16 89.0 213 37.6
EL10Ac8g20573 Beta vulgaris HOM05D008010 ORTHO05D010085 7.9e-16 88.6 268 35.4
TAR624G0391 Trochodendron aralioides HOM05D008010 ORTHO05D010085 1.3e-15 87.8 136 46.3
Lj6g0013702 Lotus japonicus HOM05D008010 ORTHO05D010085 3.0e-15 86.7 226 38.5
ATR0127G032 Amborella trichopoda HOM05D008010 ORTHO05D010085 3.9e-15 86.3 228 35.1
BcaNung05918 Brassica carinata HOM05D008010 ORTHO05D010085 3.9e-15 86.3 220 37.7
MELO3C002669.2 Cucumis melo HOM05D008010 ORTHO05D010085 8.7e-15 85.1 244 34.0
Sed0009144 Sechium edule HOM05D008010 ORTHO05D010085 8.7e-15 85.1 199 38.7
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.1e-14 84.7 221 38.9
Actinidia16781 Actinidia chinensis HOM05D008010 ORTHO05D010085 4.3e-14 82.8 156 44.9
ECA248G1583 Erigeron canadensis HOM05D000006 ORTHO05D000091 9.6e-14 81.6 209 37.8
BcaC09g51471 Brassica carinata HOM05D008010 ORTHO05D010085 4.8e-13 79.3 175 40.6
AUR62027705 Chenopodium quinoa HOM05D008010 ORTHO05D010085 8.1e-13 78.6 195 38.5
AUR62039459 Chenopodium quinoa HOM05D008010 ORTHO05D010085 1.1e-12 78.2 195 39.5
AL7G35510 Arabidopsis lyrata HOM05D008010 ORTHO05D010085 3.1e-12 76.6 156 39.1
C01p12720 Brassica napus HOM05D008010 ORTHO05D010085 3.1e-12 76.6 172 40.1
CsaV3_1G033180 Cucumis sativus L. HOM05D008010 ORTHO05D010085 4.0e-12 76.3 216 34.3
BolC1t01249H Brassica oleracea HOM05D008010 ORTHO05D010085 5.3e-12 75.9 172 40.1
ECA248G2359 Erigeron canadensis HOM05D008010 ORTHO05D010085 5.3e-12 75.9 153 43.8
Duzib160G0139 Durio zibethinus HOM05D008010 ORTHO05D010085 6.9e-12 75.5 194 36.1
arahy.Tifrunner.gnm1.ann1.42QDDD Arachis hypogaea HOM05D008010 ORTHO05D010085 9.0e-12 75.1 199 36.7
arahy.Tifrunner.gnm1.ann1.NGY302 Arachis hypogaea HOM05D008010 ORTHO05D010085 2.0e-11 73.9 198 35.9
SGA_v2.0_scaffold1G00067 Striga asiatica HOM05D008010 ORTHO05D010085 1.7e-10 70.9 244 32.0
A01p10760 Brassica napus HOM05D008010 ORTHO05D010085 2.9e-10 70.1 199 35.2
BraA01t01022Z Brassica rapa HOM05D008010 ORTHO05D010085 4.9e-10 69.3 199 35.7
Thhalv10026132m.g Eutrema salsugineum HOM05D008010 ORTHO05D010085 4.2e-09 66.2 156 38.5
Sp7g17440 Schrenkiella parvula HOM05D008010 ORTHO05D010085 1.6e-08 64.3 196 32.1
CDE04G0279 Ceratophyllum demersum HOM05D008010 ORTHO05D010085 2.1e-08 63.9 207 32.9
Aa31LG6G1450 Aethionema arabicum HOM05D008010 ORTHO05D010085 3.5e-08 63.2 161 32.3
MBI07_g09547_MAGBIO Magnolia biondii HOM05D008010 ORTHO05D010085 4.6e-08 62.8 139 39.6
unitig_85.g27297 Utricularia gibba HOM05D008010 ORTHO05D010085 7.9e-08 62.0 197 34.5
Carub.0007s2250 Capsella rubella HOM05D008010 ORTHO05D010085 1.9e-06 57.4 189 31.7


User provided reference genes

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