Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 1.9e-143 513.1 395 100.0
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 4.5e-140 501.9 395 98.2
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 3.6e-129 465.7 379 96.3
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 5.3e-117 425.2 396 87.6
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 7.0e-117 424.9 394 89.3
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 5.2e-88 328.9 416 72.1
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 1.5e-87 327.4 385 73.8
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 9.8e-87 324.7 423 68.8
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 1.1e-85 321.2 401 72.1
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 7.0e-85 318.5 382 73.8
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 2.7e-84 316.6 378 69.3
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 4.5e-84 315.8 431 66.6
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 2.9e-83 313.2 386 73.8
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 5.0e-83 312.4 385 72.2
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 1.9e-82 310.5 323 82.0
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 5.6e-82 308.9 382 73.3
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 1.6e-81 307.4 382 71.2
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 8.0e-81 305.1 386 71.8
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 1.4e-80 304.3 396 65.4
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 3.1e-80 303.1 386 71.0
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 6.8e-80 302.0 377 70.0
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 8.9e-80 301.6 381 72.7
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 1.5e-79 300.8 385 69.4
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 2.0e-79 300.4 382 69.1
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 4.4e-79 299.3 393 66.2
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 3.7e-78 296.2 378 72.8
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 3.7e-78 296.2 378 72.8
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 4.9e-78 295.8 319 76.5
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 6.4e-78 295.4 383 71.3
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 8.3e-78 295.0 385 68.3
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 8.3e-78 295.0 387 72.4
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 8.3e-78 295.0 320 75.0
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 1.1e-77 294.7 391 72.1
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 1.9e-77 293.9 391 67.3
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.2e-76 291.2 394 70.8
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 2.0e-76 290.4 386 70.5
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.7e-76 290.0 379 72.3
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 3.5e-76 289.7 379 69.7
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 6.0e-76 288.9 379 72.0
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 7.8e-76 288.5 389 66.6
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 1.7e-75 287.3 384 67.7
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 1.1e-74 284.6 382 70.2
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 1.2e-73 281.2 406 64.3
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 1.6e-73 280.8 388 68.3
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 2.8e-73 280.0 382 70.9
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 5.2e-72 275.8 378 69.3
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 1.2e-71 274.6 389 68.4
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 1.2e-71 274.6 387 68.2
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 1.2e-71 274.6 388 67.5
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 1.5e-71 274.2 374 70.6
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 2.6e-71 273.5 388 68.0
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 3.4e-71 273.1 319 74.3
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 3.4e-71 273.1 403 62.0
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 4.4e-71 272.7 382 65.7
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 7.5e-71 271.9 382 68.6
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 3.7e-70 269.6 378 64.3
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 6.4e-70 268.9 351 69.2
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 1.9e-69 267.3 385 67.3
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 2.4e-69 266.9 383 65.0
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 1.6e-68 264.2 405 66.7
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 4.6e-68 262.7 388 67.0
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 7.8e-68 261.9 384 64.8
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 1.7e-67 260.8 383 67.4
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 3.9e-67 259.6 385 63.6
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.1e-66 258.1 364 66.2
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 1.5e-66 257.7 390 66.4
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 1.5e-66 257.7 382 65.2
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.5e-66 257.7 387 68.2
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 4.3e-66 256.1 384 66.7
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 5.6e-66 255.8 395 64.6
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 5.6e-66 255.8 379 69.4
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 7.3e-66 255.4 382 66.2
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.2e-65 254.6 379 69.1
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 1.6e-65 254.2 389 68.9
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 3.6e-65 253.1 383 62.9
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.6e-65 253.1 386 65.5
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.6e-65 253.1 389 64.0
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 4.7e-65 252.7 391 63.9
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 4.7e-65 252.7 399 60.9
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 6.2e-65 252.3 326 69.3
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 6.2e-65 252.3 380 69.7
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 6.2e-65 252.3 392 64.0
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 8.1e-65 251.9 395 64.6
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.4e-64 251.1 386 64.0
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 2.3e-64 250.4 389 64.0
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 5.2e-64 249.2 382 68.3
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 2.0e-63 247.3 387 65.6
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 4.4e-63 246.1 384 68.2
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 7.5e-63 245.4 382 64.1
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 1.3e-62 244.6 387 67.4
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 1.7e-62 244.2 384 65.9
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 4.9e-62 242.7 380 66.3
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 4.9e-62 242.7 319 69.6
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 6.4e-62 242.3 322 68.6
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 7.1e-61 238.8 390 62.1
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 2.1e-60 237.3 437 61.1
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 1.1e-58 231.5 384 62.2
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.3e-58 229.9 318 68.9
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 5.6e-58 229.2 319 67.7
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 7.3e-58 228.8 320 67.5
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 9.5e-58 228.4 394 63.5
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 1.2e-57 228.0 389 62.0
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 2.8e-57 226.9 378 59.8
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 4.7e-57 226.1 394 62.9
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 4.7e-57 226.1 389 62.2
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 3.4e-55 219.9 411 59.6
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 5.8e-55 219.2 192 57.8
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 2.4e-53 213.8 387 56.1
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 5.4e-53 212.6 394 57.6
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 3.5e-52 209.9 385 58.7
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 4.6e-52 209.5 385 59.2
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 6.0e-52 209.1 386 57.0
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 1.0e-51 208.4 263 76.8
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 2.3e-51 207.2 385 66.0
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 8.7e-51 205.3 390 58.7
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 8.7e-51 205.3 390 58.7
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 8.7e-51 205.3 390 58.7
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 1.1e-50 204.9 381 64.6
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 1.1e-50 204.9 389 63.8
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 1.5e-50 204.5 389 63.8
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 4.3e-50 203.0 382 62.8
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 7.3e-50 202.2 388 58.5
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 7.3e-50 202.2 388 58.5
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 2.8e-49 200.3 389 62.0
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 4.0e-48 196.4 341 59.8
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 9.0e-48 195.3 385 62.3
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 3.4e-47 193.4 378 64.0
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 1.2e-44 184.9 395 53.2
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 3.5e-44 183.3 383 38.1
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 2.4e-40 170.6 400 59.0
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 5.8e-39 166.0 403 58.6
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 1.3e-38 164.9 129 63.6
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 1.9e-37 161.0 278 74.8
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 1.9e-37 161.0 166 51.2
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 7.1e-37 159.1 385 40.5
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 1.6e-36 157.9 338 52.1
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 2.7e-36 157.1 410 50.5
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 7.9e-36 155.6 376 59.8
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 1.3e-35 154.8 258 71.3
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 3.9e-35 153.3 411 56.7
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 8.7e-35 152.1 411 56.4
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 8.7e-35 152.1 411 56.4
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 1.5e-34 151.4 403 46.4
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 1.3e-33 148.3 284 70.4
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 1.6e-33 147.9 197 43.7
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 1.4e-32 144.8 190 43.2
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 5.8e-31 139.4 396 52.8
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 7.6e-31 139.0 371 58.2
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 1.3e-30 138.3 325 56.3
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 1.3e-30 138.3 330 56.1
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 2.2e-30 137.5 405 52.6
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 4.9e-30 136.3 399 50.9
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 3.5e-28 130.2 412 53.4
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 5.6e-26 122.9 89 76.4
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 9.6e-26 122.1 200 38.0
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 7.6e-23 112.5 242 76.4
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 1.0e-22 112.1 405 44.9
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 1.9e-21 107.8 100 57.0
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 1.9e-18 97.8 190 35.8
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 2.5e-18 97.4 120 59.2
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 1.3e-17 95.1 105 52.4
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 6.3e-17 92.8 120 44.2
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 1.2e-15 88.6 247 59.9
Pp3c14_13680 Physcomitrium patens HOM05D004193 ORTHO05D004862 5.9e-15 86.3 162 31.5
ATR0705G001 Amborella trichopoda HOM05D004193 ORTHO05D004862 5.1e-11 73.2 110 60.0
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 8.8e-11 72.4 160 37.5
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.5e-10 71.6 129 39.5
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 9.1e-08 62.4 49 55.1
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 2.2e-06 57.8 49 51.0
AL2G35820 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 5.0e-06 56.6 45 53.3
AL6G39660 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 5.0e-06 56.6 45 53.3


User provided reference genes

Program Settings