Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g072230.3 Solanum lycopersicum HOM05D006665 ORTHO05D008327 2.6e-222 775.0 375 100.0
Sopen02g021210 Solanum pennellii HOM05D006665 ORTHO05D008327 7.6e-222 773.5 375 99.5
PGSC0003DMG400028425 Solanum tuberosum HOM05D006665 ORTHO05D008327 6.6e-218 760.4 375 97.9
Nitab4.5_0000437g0180 Nicotiana tabacum HOM05D006665 ORTHO05D008327 2.1e-195 685.6 382 86.9
Nitab4.5_0008526g0030 Nicotiana tabacum HOM05D006665 ORTHO05D008327 1.3e-194 682.9 375 87.2
Peaxi162Scf00371g00319 Petunia axillaris HOM05D006665 ORTHO05D008327 5.3e-175 617.8 373 80.2
Cc02_g15490 Coffea canephora HOM05D006665 ORTHO05D008327 2.5e-156 555.8 378 69.8
CSS0008142 Camellia sinensis var. sinensis HOM05D006665 ORTHO05D008327 5.2e-154 548.1 372 68.8
MSTRG.7424 Avicennia marina HOM05D006665 ORTHO05D008327 8.5e-149 530.8 375 66.9
TAR627G0088 Trochodendron aralioides HOM05D006665 ORTHO05D008327 1.9e-148 529.6 375 66.4
QL05p048519 Quercus lobata HOM05D006665 ORTHO05D008327 2.1e-147 526.2 373 66.5
PGR042G0915 Punica granatum HOM05D006665 ORTHO05D008327 4.7e-147 525.0 375 64.5
PSO170G0566 Papaver somniferum HOM05D000074 ORTHO05D000220 5.7e-145 518.1 378 66.1
Cfa000642 Carpinus fangiana HOM05D006665 ORTHO05D008327 4.8e-144 515.0 373 64.6
Ciclev10015641m.g Citrus clementina HOM05D006665 ORTHO05D008327 6.3e-144 514.6 374 65.5
HanXRQChr15g0480791 Helianthus annuus HOM05D006665 ORTHO05D008327 6.3e-144 514.6 373 66.0
GSVIVG01021249001 Vitis vinifera HOM05D006665 ORTHO05D008327 7.0e-143 511.1 376 64.4
Migut.M01013 Erythranthe guttata HOM05D006665 ORTHO05D008327 1.2e-142 510.4 377 65.5
Nn3g21119 Nelumbo nucifera HOM05D006665 ORTHO05D008327 5.9e-142 508.1 375 63.2
Aqoxy4G00257 Aquilegia oxysepala HOM05D006665 ORTHO05D008327 1.0e-141 507.3 374 63.6
Manes.17G058400 Manihot esculenta HOM05D006665 ORTHO05D008327 3.8e-141 505.4 374 63.4
Prupe.4G065800 Prunus persica HOM05D006665 ORTHO05D008327 8.6e-141 504.2 376 64.1
Gohir.D10G035900 Gossypium hirsutum HOM05D006665 ORTHO05D008327 1.5e-140 503.4 378 61.1
DCAR_005186 Daucus carota HOM05D006665 ORTHO05D008327 5.5e-140 501.5 375 64.0
Gorai.011G037800 Gossypium raimondii HOM05D006665 ORTHO05D008327 5.5e-140 501.5 378 60.8
RcHm_v2.0_Chr5g0011451 Rosa chinensis HOM05D006665 ORTHO05D008327 9.5e-140 500.7 378 64.8
Gohir.A10G035200 Gossypium hirsutum HOM05D006665 ORTHO05D008327 1.2e-139 500.4 378 60.8
TWI73G0293 Tripterygium wilfordii HOM05D006665 ORTHO05D008327 2.1e-139 499.6 374 63.4
Potri.011G069700 Populus trichocarpa HOM05D006665 ORTHO05D008327 8.0e-139 497.7 377 63.4
Dinv32346 Davidia involucrata HOM05D006665 ORTHO05D008327 1.0e-138 497.3 374 62.8
Sabra11G0053800 Salix brachista HOM05D006665 ORTHO05D008327 1.4e-138 496.9 377 63.4
THA.LOC104812882 Tarenaya hassleriana HOM05D006665 ORTHO05D008327 1.4e-138 496.9 380 62.9
FvH4_1g07520 Fragaria vesca HOM05D006665 ORTHO05D008327 1.5e-137 493.4 378 63.0
FAN23G0824 Fragaria x ananassa HOM05D006665 ORTHO05D008327 4.4e-137 491.9 378 63.0
FAN26G0384 Fragaria x ananassa HOM05D006665 ORTHO05D008327 9.8e-137 490.7 378 62.4
CANSAT80G2447 Cannabis sativa HOM05D000074 ORTHO05D000220 2.2e-136 489.6 372 63.2
Duzib235G0558 Durio zibethinus HOM05D006665 ORTHO05D008327 2.2e-136 489.6 377 60.2
ECA236G1698 Erigeron canadensis HOM05D000074 ORTHO05D000220 3.7e-136 488.8 366 63.7
COL.COLO4_31251 Corchorus olitorius HOM05D006665 ORTHO05D008327 1.1e-135 487.3 397 58.2
FAN19G1242 Fragaria x ananassa HOM05D006665 ORTHO05D008327 1.4e-135 486.9 379 62.5
MD05G1296500 Malus domestica HOM05D006665 ORTHO05D008327 1.4e-135 486.9 375 62.1
CsaV3_1G033140 Cucumis sativus L. HOM05D006665 ORTHO05D008327 2.4e-135 486.1 374 60.7
Eucgr.E04353 Eucalyptus grandis HOM05D006665 ORTHO05D008327 9.2e-135 484.2 376 60.6
Sed0010934 Sechium edule HOM05D006665 ORTHO05D008327 9.2e-135 484.2 370 61.1
Eucgr.E02766 Eucalyptus grandis HOM05D006665 ORTHO05D008327 1.6e-134 483.4 376 60.6
MBI07_g09544_MAGBIO Magnolia biondii HOM05D006665 ORTHO05D008327 1.6e-134 483.4 381 62.5
Thecc.06G166800 Theobroma cacao HOM05D006665 ORTHO05D008327 2.0e-134 483.0 377 59.4
Lj2C318T4 Lonicera japonica HOM05D006665 ORTHO05D008327 1.0e-133 480.7 375 63.2
Lalb_Chr13g0295211 Lupinus albus HOM05D006665 ORTHO05D008327 6.6e-133 478.0 375 61.3
CiPaw.09G072200 Carya illinoinensis HOM05D006665 ORTHO05D008327 8.6e-133 477.6 373 61.1
Sc05g0006960 Simmondsia chinensis HOM05D006665 ORTHO05D008327 4.3e-132 475.3 370 60.8
Carub.0008s0223 Capsella rubella HOM05D006665 ORTHO05D008327 1.6e-131 473.4 377 61.5
AL8G12850 Arabidopsis lyrata HOM05D006665 ORTHO05D008327 4.0e-130 468.8 377 59.9
AT5G45760 Arabidopsis thaliana HOM05D006665 ORTHO05D008327 4.0e-130 468.8 377 59.9
Sp2g10670 Schrenkiella parvula HOM05D006665 ORTHO05D008327 7.5e-129 464.5 377 59.2
CARHR176220 Cardamine hirsuta HOM05D006665 ORTHO05D008327 1.3e-128 463.8 377 58.9
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 1.7e-125 453.4 371 59.6
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 8.6e-125 451.1 371 58.8
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 4.3e-124 448.7 371 58.8
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 5.6e-124 448.4 369 59.3
Sabra11G0057300 Salix brachista HOM05D000074 ORTHO05D000220 1.6e-123 446.8 352 61.6
FAN26G1216 Fragaria x ananassa HOM05D006665 ORTHO05D008327 2.1e-123 446.4 378 58.7
ClCG03G007500 Citrullus lanatus HOM05D000074 ORTHO05D000220 3.1e-122 442.6 369 58.3
EL10Ac8g20571 Beta vulgaris HOM05D006665 ORTHO05D008327 5.2e-122 441.8 374 57.8
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 1.3e-120 437.2 362 59.4
Medtr8g086605 Medicago truncatula HOM05D006665 ORTHO05D008327 1.3e-120 437.2 373 56.0
TPR.G6756 Trifolium pratense HOM05D006665 ORTHO05D008327 1.3e-120 437.2 373 56.6
Lj4g0005276 Lotus japonicus HOM05D000074 ORTHO05D008327 1.1e-119 434.1 369 56.9
Phvul.002G240300 Phaseolus vulgaris HOM05D006665 ORTHO05D008327 1.1e-119 434.1 376 56.4
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 1.4e-119 433.7 363 58.4
Os01g0205100 Oryza sativa ssp. japonica HOM05D006665 ORTHO05D008327 1.9e-119 433.3 372 56.5
Thhalv10000923m.g Eutrema salsugineum HOM05D006665 ORTHO05D008327 5.4e-119 431.8 401 54.6
Glyma.05G160032 Glycine max HOM05D006665 ORTHO05D008327 3.5e-118 429.1 374 56.1
Glyma.08G117600 Glycine max HOM05D006665 ORTHO05D008327 6.0e-118 428.3 374 55.6
Aa31LG9G7310 Aethionema arabicum HOM05D006665 ORTHO05D008327 1.3e-117 427.2 386 56.7
AUR62027710 Chenopodium quinoa HOM05D006665 ORTHO05D008327 8.1e-115 417.9 364 55.5
SalBow8G2667 Salvia bowleyana HOM05D000074 ORTHO05D000220 4.0e-114 415.6 393 55.2
arahy.Tifrunner.gnm1.ann1.L41MS4 Arachis hypogaea HOM05D006665 ORTHO05D008327 6.8e-114 414.8 374 56.7
arahy.Tifrunner.gnm1.ann1.UF726L Arachis hypogaea HOM05D006665 ORTHO05D008327 2.7e-110 402.9 370 55.9
Actinidia07650 Actinidia chinensis HOM05D006665 ORTHO05D008327 2.1e-102 376.7 253 68.0
SEGI_17628 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 3.6e-99 365.9 381 50.4
Ah.14g087040 Amaranthus hybridus HOM05D006665 ORTHO05D008327 4.6e-94 349.0 405 47.2
ATR0012G051 Amborella trichopoda HOM05D006665 ORTHO05D008327 7.8e-94 348.2 310 57.1
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 8.4e-88 328.2 351 52.1
Zm00001eb120830 Zea mays HOM05D006665 ORTHO05D008327 6.0e-78 295.4 296 50.7
Pp3c18_2320 Physcomitrium patens HOM05D006665 ORTHO05D008327 1.3e-77 294.3 377 43.0
Mapoly0020s0147 Marchantia polymorpha HOM05D006665 ORTHO05D008327 3.7e-75 286.2 368 40.8
vmacro16044 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 1.3e-72 277.7 223 62.8
SMO118G0425 Selaginella moellendorffii HOM05D006665 ORTHO05D008327 6.1e-70 268.9 377 39.8
Atru.chr10.1583 Acer truncatum HOM05D006665 ORTHO05D008327 3.7e-67 259.6 183 66.7
AagrBONN_evm.TU.Sc2ySwM_117.2766 Anthoceros agrestis HOM05D006665 ORTHO05D008327 1.3e-64 251.1 316 41.1
Rhsim02G0145600 Rhododendron simsii HOM05D006665 ORTHO05D008327 1.4e-61 241.1 208 59.6
CBR_g34019 Chara braunii HOM05D006665 ORTHO05D008327 4.3e-60 236.1 406 36.7
Atru.chr10.1584 Acer truncatum HOM05D006665 ORTHO05D008327 2.2e-59 233.8 187 60.4
VMungo0251G1318 Vigna mungo HOM05D006665 ORTHO05D008327 6.9e-58 228.8 220 50.5
Lsat_1_v5_gn_7_25921 Lactuca sativa HOM05D006665 ORTHO05D008327 1.2e-57 228.0 208 55.3
Haze_06187 Corylus avellana HOM05D006665 ORTHO05D008327 4.2e-55 219.5 185 60.0
BcaB06g27285 Brassica carinata HOM05D006665 ORTHO05D008327 9.4e-55 218.4 250 46.8
Dinv12760 Davidia involucrata HOM05D006665 ORTHO05D008327 1.6e-54 217.6 253 47.0
Cpa.g.sc7.98 Carica papaya HOM05D006665 ORTHO05D008327 8.8e-53 211.8 150 64.7
AUR62039464 Chenopodium quinoa HOM05D006665 ORTHO05D008327 8.8e-53 211.8 192 55.7
Hma1.2p1_0113F.1_g055090 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 1.1e-52 211.5 212 52.4
Hma1.2p1_0113F.1_g055096 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 1.1e-52 211.5 212 52.4
Hund25815 Selenicereus undatus HOM05D006665 ORTHO05D008327 3.7e-51 206.5 181 59.7
SGA_v2.0_scaffold1G00072 Striga asiatica HOM05D006665 ORTHO05D008327 2.6e-49 200.3 126 69.8
BcaB04g18653 Brassica carinata HOM05D006665 ORTHO05D008327 1.7e-40 171.0 147 57.8
Oeu043117.1 Olea europaea HOM05D006665 ORTHO05D008327 3.8e-40 169.9 148 58.8
Haze_06186 Corylus avellana HOM05D006665 ORTHO05D008327 8.8e-37 158.7 144 53.5
Psat7g069080 Pisum sativum HOM05D006665 ORTHO05D008327 3.4e-36 156.8 123 61.8
vmacro16043 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 1.3e-35 154.8 103 65.0
Psat7g069040 Pisum sativum HOM05D006665 ORTHO05D008327 1.8e-34 151.0 262 35.5
Psat2g000080 Pisum sativum HOM05D006665 ORTHO05D008327 3.1e-34 150.2 140 49.3
RcHm_v2.0_Chr5g0011471 Rosa chinensis HOM05D006665 ORTHO05D008327 4.7e-30 136.3 173 46.2
Cre16.g678400 Chlamydomonas reinhardtii HOM05D006665 ORTHO05D008327 1.6e-22 111.3 281 28.8
MCO11G387 Micromonas commoda HOM05D006665 ORTHO05D008327 2.8e-22 110.5 346 25.7
SEGI_34445 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 6.1e-22 109.4 104 47.1
arahy.Tifrunner.gnm1.ann1.XDX40G Arachis hypogaea HOM05D006665 ORTHO05D008327 1.2e-17 95.1 72 59.7
arahy.Tifrunner.gnm1.ann1.H6TAT4 Arachis hypogaea HOM05D006665 ORTHO05D008327 1.0e-16 92.0 99 50.5
FAN25G1258 Fragaria x ananassa HOM05D006665 ORTHO05D008327 2.5e-15 87.4 73 58.9
FAN11G1287 Fragaria x ananassa HOM05D006665 ORTHO05D008327 1.0e-13 82.0 191 34.0
VMungo0251G0552 Vigna mungo HOM05D006665 ORTHO05D008327 2.3e-13 80.9 75 54.7
Sabra04G0038600 Salix brachista HOM05D000074 ORTHO05D000220 5.2e-13 79.7 114 44.7
FvH4_3g07410 Fragaria vesca HOM05D006665 ORTHO05D008327 1.2e-12 78.6 162 36.4
Lj9C240G9 Lonicera japonica HOM05D000347 ORTHO05D001997 3.0e-08 63.9 175 25.1
arahy.Tifrunner.gnm1.ann1.IN0C4L Arachis hypogaea HOM05D006665 ORTHO05D012122 4.7e-06 56.6 69 46.4


User provided reference genes

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