Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 9.6e-59 229.9 115 100.0
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 1.1e-57 226.5 115 98.3
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 1.8e-49 199.1 115 91.3
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 5.8e-40 167.5 114 82.5
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 1.4e-25 119.8 97 71.1
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 3.1e-25 118.6 94 72.3
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 1.8e-20 102.8 115 54.8
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 3.9e-20 101.7 118 58.5
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 5.1e-20 101.3 120 55.0
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 1.1e-19 100.1 87 56.3
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 1.5e-19 99.8 113 55.8
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 1.9e-19 99.4 113 56.6
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.5e-19 99.0 91 61.5
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 4.3e-19 98.2 87 59.8
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 4.3e-19 98.2 86 61.6
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 2.2e-18 95.9 112 54.5
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 3.7e-18 95.1 86 59.3
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 1.4e-17 93.2 114 50.9
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.8e-17 92.8 112 50.0
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.8e-17 92.8 113 48.7
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 5.3e-17 91.3 112 52.7
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 5.9e-16 87.8 106 50.9
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 7.7e-16 87.4 114 50.0
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.3e-15 86.7 106 50.9
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 1.7e-15 86.3 106 47.2
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 2.2e-15 85.9 96 55.2
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 2.2e-15 85.9 76 59.2
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 2.9e-15 85.5 109 52.3
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 2.9e-15 85.5 106 50.0
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 5.0e-15 84.7 109 46.8
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 6.5e-15 84.3 86 51.2
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 8.5e-15 84.0 111 46.8
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 8.5e-15 84.0 84 52.4
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 1.1e-14 83.6 111 47.7
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 1.1e-14 83.6 108 49.1
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 1.4e-14 83.2 97 51.5
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 1.9e-14 82.8 107 53.3
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.9e-14 82.8 99 54.5
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 3.2e-14 82.0 108 44.4
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 3.2e-14 82.0 96 50.0
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 3.2e-14 82.0 95 53.7
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 5.5e-14 81.3 85 55.3
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 1.2e-13 80.1 105 48.6
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.7e-13 79.0 86 52.3
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 2.7e-13 79.0 89 55.1
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 3.6e-13 78.6 100 53.0
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 3.6e-13 78.6 99 51.5
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 6.1e-13 77.8 102 49.0
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 7.9e-13 77.4 86 48.8
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 7.9e-13 77.4 111 50.5
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.4e-12 76.6 109 43.1
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 1.8e-12 76.3 89 47.2
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.8e-12 76.3 108 49.1
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 2.3e-12 75.9 112 42.9
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 3.0e-12 75.5 75 50.7
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 3.0e-12 75.5 75 50.7
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.0e-12 75.5 76 47.4
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 3.9e-12 75.1 106 45.3
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 3.9e-12 75.1 92 44.6
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 5.1e-12 74.7 92 45.7
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 5.1e-12 74.7 102 46.1
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 5.1e-12 74.7 99 50.5
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 6.7e-12 74.3 85 47.1
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 6.7e-12 74.3 75 50.7
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 6.7e-12 74.3 113 48.7
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 6.7e-12 74.3 110 44.5
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 6.7e-12 74.3 110 44.5
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 1.1e-11 73.6 75 56.0
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 1.1e-11 73.6 112 46.4
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 1.5e-11 73.2 78 55.1
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 2.0e-11 72.8 85 51.8
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 2.0e-11 72.8 110 48.2
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 2.0e-11 72.8 78 52.6
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 2.5e-11 72.4 77 50.6
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.5e-11 72.4 109 46.8
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 3.3e-11 72.0 125 44.8
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 3.3e-11 72.0 109 44.0
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 3.3e-11 72.0 74 52.7
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 4.3e-11 71.6 79 50.6
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 4.3e-11 71.6 84 48.8
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 5.7e-11 71.2 110 44.5
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 7.4e-11 70.9 89 48.3
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 7.4e-11 70.9 81 49.4
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 9.7e-11 70.5 82 43.9
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 9.7e-11 70.5 80 50.0
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.3e-10 70.1 103 43.7
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 1.3e-10 70.1 77 49.4
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 1.3e-10 70.1 112 42.9
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.3e-10 70.1 78 46.2
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 1.3e-10 70.1 80 47.5
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 2.2e-10 69.3 80 52.5
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 2.2e-10 69.3 91 42.9
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 2.2e-10 69.3 88 44.3
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 2.8e-10 68.9 111 47.7
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 2.8e-10 68.9 111 45.0
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 3.7e-10 68.6 62 59.7
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 3.7e-10 68.6 87 42.5
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 3.7e-10 68.6 104 46.2
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 3.7e-10 68.6 77 45.5
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 4.8e-10 68.2 88 43.2
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 6.3e-10 67.8 92 42.4
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 6.3e-10 67.8 108 43.5
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 8.2e-10 67.4 76 46.1
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 8.2e-10 67.4 116 43.1
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 1.1e-09 67.0 95 45.3
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 1.1e-09 67.0 95 45.3
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 1.1e-09 67.0 91 44.0
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 1.1e-09 67.0 87 48.3
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 1.1e-09 67.0 108 45.4
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 1.4e-09 66.6 77 45.5
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 1.4e-09 66.6 79 45.6
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 2.4e-09 65.9 75 48.0
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 3.1e-09 65.5 98 46.9
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 3.1e-09 65.5 106 38.7
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 4.1e-09 65.1 116 41.4
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 6.9e-09 64.3 38 73.7
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 6.9e-09 64.3 94 44.7
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.2e-08 63.5 95 47.4
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 1.2e-08 63.5 63 54.0
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 1.2e-08 63.5 82 46.3
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 1.2e-08 63.5 89 41.6
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 1.5e-08 63.2 110 44.5
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 1.5e-08 63.2 91 42.9
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 2.0e-08 62.8 74 54.1
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 2.0e-08 62.8 98 41.8
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 2.6e-08 62.4 108 43.5
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 3.4e-08 62.0 86 44.2
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 4.5e-08 61.6 77 50.6
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 5.9e-08 61.2 50 60.0
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 7.7e-08 60.8 109 42.2
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.0e-07 60.5 98 42.9
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 1.0e-07 60.5 45 60.0
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 1.7e-07 59.7 101 41.6
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 1.7e-07 59.7 109 41.3
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 3.8e-07 58.5 63 49.2
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.8e-07 58.5 107 40.2
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 5.0e-07 58.2 97 42.3
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 6.5e-07 57.8 114 41.2
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 6.5e-07 57.8 107 39.3
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 8.5e-07 57.4 109 37.6
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 1.4e-06 56.6 96 43.8
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 3.2e-06 55.5 108 36.1
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 5.5e-06 54.7 107 38.3
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 5.5e-06 54.7 59 45.8


User provided reference genes

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