Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 6.7e-229 797.0 391 100.0
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 5.7e-212 740.7 392 93.4
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 6.9e-202 707.2 347 99.7
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 2.9e-200 701.8 347 98.6
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 3.0e-181 638.6 378 81.7
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 3.0e-181 638.6 378 81.7
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 1.5e-180 636.3 378 80.2
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 5.7e-180 634.4 344 87.8
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 6.3e-179 630.9 377 80.6
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 7.0e-178 627.5 375 78.9
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 5.9e-177 624.4 365 81.6
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 7.7e-177 624.0 375 78.9
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 5.0e-176 621.3 370 79.5
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 3.2e-175 618.6 375 78.4
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 4.2e-175 618.2 372 78.8
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 2.1e-174 615.9 375 75.7
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 3.6e-174 615.1 343 84.0
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 1.0e-173 613.6 375 77.3
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 1.0e-173 613.6 378 77.2
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 1.8e-173 612.8 372 78.2
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 8.8e-173 610.5 356 80.9
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 1.2e-172 610.1 349 83.7
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 5.7e-172 607.8 343 83.4
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 2.2e-171 605.9 376 76.3
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 2.2e-171 605.9 344 83.4
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 2.2e-171 605.9 356 80.1
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 2.2e-171 605.9 375 77.1
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 3.7e-171 605.1 344 82.0
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 3.7e-171 605.1 347 81.6
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 6.3e-171 604.4 347 82.4
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 8.3e-171 604.0 344 82.8
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 8.3e-171 604.0 365 78.4
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 1.8e-170 602.8 374 75.4
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 2.4e-170 602.4 349 82.2
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 2.4e-170 602.4 354 80.8
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 2.4e-170 602.4 378 75.1
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 2.4e-170 602.4 354 79.9
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 9.1e-170 600.5 395 73.7
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 9.1e-170 600.5 369 77.2
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.2e-169 600.1 343 81.9
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 2.7e-169 599.0 383 74.7
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 3.5e-169 598.6 383 74.9
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 5.9e-169 597.8 383 74.4
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 5.9e-169 597.8 372 75.8
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 5.9e-169 597.8 341 81.5
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 5.9e-169 597.8 356 79.8
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 1.3e-168 596.7 390 73.3
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 1.3e-168 596.7 356 79.2
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 2.3e-168 595.9 356 80.9
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 2.9e-168 595.5 396 73.0
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 3.8e-168 595.1 343 81.0
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 5.0e-168 594.7 383 74.2
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 5.0e-168 594.7 351 79.2
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 8.6e-168 594.0 344 81.7
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 1.1e-167 593.6 357 80.4
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 1.5e-167 593.2 375 74.9
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 1.5e-167 593.2 376 74.2
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 1.9e-167 592.8 344 80.5
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 2.5e-167 592.4 374 75.7
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 2.5e-167 592.4 348 79.9
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 4.2e-167 591.7 370 75.4
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 4.2e-167 591.7 356 78.7
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 5.6e-167 591.3 364 77.5
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 7.2e-167 590.9 374 75.1
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 9.5e-167 590.5 378 74.1
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.2e-166 590.1 341 81.8
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 1.2e-166 590.1 341 80.9
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 2.8e-166 589.0 341 80.1
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 3.6e-166 588.6 343 80.8
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 6.1e-166 587.8 341 80.6
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 8.0e-166 587.4 377 74.5
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 8.0e-166 587.4 352 78.1
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 1.4e-165 586.6 372 74.7
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 2.3e-165 585.9 453 65.6
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 4.0e-165 585.1 352 77.0
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 4.0e-165 585.1 358 77.9
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 5.2e-165 584.7 345 79.4
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 6.8e-165 584.3 346 78.0
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 8.9e-165 583.9 341 80.6
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 1.5e-164 583.2 343 79.6
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 2.0e-164 582.8 392 72.4
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 2.6e-164 582.4 377 73.2
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 2.6e-164 582.4 345 79.7
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 4.4e-164 581.6 343 79.6
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 4.4e-164 581.6 346 79.2
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 5.7e-164 581.3 381 73.5
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 5.7e-164 581.3 341 80.4
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 7.5e-164 580.9 375 73.3
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 7.5e-164 580.9 341 79.5
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 4.9e-163 578.2 337 80.1
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 6.4e-163 577.8 412 68.0
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 6.4e-163 577.8 374 71.9
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 8.3e-163 577.4 341 78.3
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 1.4e-162 576.6 389 73.8
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 3.2e-162 575.5 370 74.3
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 4.6e-161 571.6 349 78.5
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 2.9e-160 568.9 481 61.3
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 2.1e-158 562.8 344 78.2
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 4.4e-156 555.1 343 75.5
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 6.0e-153 544.7 341 73.9
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 5.2e-149 531.6 386 67.1
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 5.2e-149 531.6 358 72.3
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 8.3e-147 524.2 349 74.8
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 7.8e-145 517.7 304 80.6
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 1.2e-142 510.4 350 70.6
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 1.3e-139 500.4 315 81.0
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 3.7e-139 498.8 315 81.0
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 6.4e-139 498.0 341 70.1
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 2.7e-137 492.7 339 69.0
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 2.3e-136 489.6 339 68.4
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 2.2e-131 473.0 270 83.7
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 1.9e-130 469.9 377 63.4
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 2.8e-126 456.1 329 65.3
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.6e-126 455.7 255 83.5
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.2e-123 446.4 255 80.8
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 7.4e-119 431.4 346 60.1
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 2.8e-118 429.5 404 57.2
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 1.1e-111 407.5 232 80.2
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 7.4e-111 404.8 367 59.7
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.5e-108 397.1 356 61.0
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 8.4e-107 391.3 228 81.6
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 1.2e-105 387.5 339 54.9
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 6.9e-101 371.7 245 72.7
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 5.3e-93 345.5 339 51.9
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 2.6e-92 343.2 346 50.9
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 6.5e-91 338.6 220 74.5
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 8.5e-91 338.2 254 67.3
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 1.4e-90 337.4 190 85.3
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 1.6e-81 307.4 176 83.0
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 2.7e-81 306.6 179 86.6
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 7.2e-74 282.0 219 65.3
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 3.7e-62 243.0 167 71.3
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 7.0e-61 238.8 118 93.2
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 2.0e-52 210.7 344 38.7
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 1.0e-51 208.4 118 80.5
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 2.5e-42 177.2 94 87.2
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 8.9e-40 168.7 99 82.8
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 1.5e-39 167.9 248 43.5
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 3.5e-36 156.8 358 32.7
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 4.7e-25 119.8 81 75.3
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.7e-22 111.3 95 57.9
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 7.1e-21 105.9 270 32.2
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.2e-20 105.1 171 41.5
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 1.7e-19 101.3 87 59.8
Lj5A796T26 Lonicera japonica HOM05D005273 ORTHO05D006195 2.1e-12 77.8 44 77.3
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 7.8e-12 75.9 45 77.8


User provided reference genes

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