Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 5.9e-275 950.3 486 100.0
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 9.4e-265 916.4 486 96.1
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 3.9e-263 911.0 486 95.9
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.7e-261 905.6 486 94.7
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.2e-256 889.4 469 96.2
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 2.3e-247 858.6 439 100.0
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 7.7e-227 790.4 489 81.6
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 1.9e-225 785.8 491 81.5
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 9.5e-225 783.5 491 82.5
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 4.0e-223 778.1 492 80.5
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 6.8e-223 777.3 458 85.2
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 3.4e-222 775.0 491 79.6
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 3.4e-222 775.0 441 87.8
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 4.4e-222 774.6 475 82.5
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 9.8e-222 773.5 486 80.7
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 1.7e-221 772.7 489 80.2
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 8.3e-221 770.4 449 85.7
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 1.1e-220 770.0 492 79.5
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 1.8e-220 769.2 489 81.4
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 1.8e-220 769.2 445 87.2
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 3.2e-220 768.5 440 87.0
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 3.2e-220 768.5 491 79.6
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 4.1e-220 768.1 490 80.6
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 5.4e-220 767.7 477 82.0
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 9.2e-220 766.9 439 86.3
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 1.6e-219 766.1 487 81.1
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 1.6e-219 766.1 480 81.5
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 3.5e-219 765.0 481 81.1
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 3.5e-219 765.0 483 80.3
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 4.6e-219 764.6 493 78.9
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 5.9e-219 764.2 492 79.9
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 1.0e-218 763.5 488 79.5
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 1.3e-218 763.1 436 87.8
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 1.7e-218 762.7 455 83.7
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 2.3e-218 762.3 491 78.8
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.0e-218 761.9 440 86.8
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 3.0e-218 761.9 491 78.6
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 3.0e-218 761.9 487 80.1
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 3.9e-218 761.5 457 81.8
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 3.9e-218 761.5 482 79.7
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 8.6e-218 760.4 491 79.4
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 8.6e-218 760.4 439 86.6
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 1.5e-217 759.6 445 86.1
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 2.5e-217 758.8 445 85.6
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 5.6e-217 757.7 446 84.5
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 5.6e-217 757.7 445 85.8
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 2.8e-216 755.4 449 83.5
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 3.6e-216 755.0 432 86.6
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 1.8e-215 752.7 434 86.6
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 2.3e-215 752.3 441 84.4
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 5.2e-215 751.1 483 79.5
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 1.2e-214 750.0 443 83.5
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.5e-214 749.6 435 86.0
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 2.0e-214 749.2 439 85.6
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 2.0e-214 749.2 440 85.5
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 2.6e-214 748.8 440 84.8
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 3.4e-214 748.4 444 85.1
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 4.4e-214 748.0 447 84.1
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 5.8e-214 747.7 437 84.7
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 5.8e-214 747.7 444 83.6
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 7.5e-214 747.3 490 78.4
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 7.5e-214 747.3 442 82.8
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 9.8e-214 746.9 440 85.9
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 2.9e-213 745.3 439 85.9
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 2.9e-213 745.3 388 96.9
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 3.7e-213 745.0 446 85.0
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 4.9e-213 744.6 449 83.5
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 8.3e-213 743.8 484 77.5
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 1.1e-212 743.4 451 82.0
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 1.1e-212 743.4 451 82.0
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 1.4e-212 743.0 437 84.2
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 1.4e-212 743.0 436 86.5
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 2.4e-212 742.3 440 84.8
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 4.1e-212 741.5 443 82.8
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 5.4e-212 741.1 443 82.8
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 7.0e-212 740.7 451 81.8
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 9.2e-212 740.3 443 82.4
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 1.2e-211 740.0 450 83.1
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 1.6e-211 739.6 451 81.8
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 1.6e-211 739.6 451 81.8
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 1.6e-211 739.6 440 85.7
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 1.6e-211 739.6 486 78.0
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 2.7e-211 738.8 443 82.4
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 2.7e-211 738.8 436 83.7
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 3.5e-211 738.4 443 82.4
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 3.5e-211 738.4 443 82.4
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 4.6e-211 738.0 437 84.0
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 7.8e-211 737.3 443 84.7
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.7e-210 736.1 439 84.1
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 1.7e-210 736.1 442 81.7
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 2.3e-210 735.7 489 78.1
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 3.9e-210 734.9 443 82.2
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 8.6e-210 733.8 460 81.5
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 2.5e-209 732.3 436 84.6
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 3.3e-209 731.9 463 79.5
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 4.3e-209 731.5 482 77.6
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 5.6e-209 731.1 436 83.5
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 5.6e-209 731.1 432 84.5
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 2.8e-208 728.8 436 83.3
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 1.4e-207 726.5 431 83.5
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 2.3e-207 725.7 435 83.7
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 6.8e-207 724.2 487 77.2
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 2.9e-205 718.8 431 82.8
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 4.9e-205 718.0 489 76.1
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 6.4e-205 717.6 435 82.8
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 6.4e-205 717.6 449 81.3
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 6.4e-205 717.6 436 81.2
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.1e-204 716.8 448 81.0
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 1.4e-204 716.5 495 75.8
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 2.1e-203 712.6 448 81.2
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.0e-202 710.3 435 81.6
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 5.1e-202 708.0 489 75.3
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 6.6e-202 707.6 435 81.4
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 1.2e-200 703.4 437 79.9
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 1.8e-199 699.5 441 78.0
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 5.4e-196 688.0 413 82.6
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 3.5e-187 658.7 439 76.3
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 1.1e-185 653.7 432 74.5
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 2.0e-182 642.9 432 74.5
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 4.9e-181 638.3 473 69.1
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 8.4e-181 637.5 443 71.8
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 6.2e-176 621.3 427 73.3
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 7.6e-174 614.4 436 69.7
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 1.3e-168 597.0 427 70.3
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 5.3e-167 591.7 438 68.3
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 7.6e-166 587.8 356 81.5
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 1.4e-159 567.0 428 68.5
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 1.4e-159 567.0 485 64.9
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 5.7e-153 545.0 315 87.0
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 9.7e-153 544.3 318 85.8
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 1.3e-125 454.1 296 80.1
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 1.8e-122 443.7 249 90.4
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 3.7e-120 436.0 233 93.6
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 2.3e-117 426.8 258 83.7
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 5.0e-117 425.6 448 50.7
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 6.1e-115 418.7 330 67.3
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 6.1e-115 418.7 262 80.9
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 3.1e-111 406.4 289 73.0
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 3.5e-94 349.7 405 53.6
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 1.1e-92 344.7 201 87.6
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 5.1e-85 319.3 182 86.3
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 2.0e-81 307.4 177 84.2
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 2.1e-78 297.4 231 69.7
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 9.6e-76 288.5 182 80.8
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 4.9e-72 276.2 421 41.8
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 1.5e-65 254.6 217 63.1
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 3.4e-65 253.4 223 62.3
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 4.9e-64 249.6 217 62.7
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 5.4e-63 246.1 245 57.6
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 2.7e-62 243.8 296 45.6
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 3.1e-58 230.3 215 59.1
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 2.6e-57 227.3 124 88.7
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 5.8e-49 199.5 116 82.8
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 4.8e-43 179.9 89 97.8
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 2.4e-42 177.6 188 55.9
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 7.2e-39 166.0 95 84.2
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 5.9e-33 146.4 160 51.9
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 2.6e-28 131.0 144 54.9
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 3.1e-26 124.0 133 45.1
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 1.2e-25 122.1 83 71.1
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 3.2e-23 114.0 67 85.1
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 4.2e-23 113.6 212 39.2
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 3.3e-20 104.0 125 49.6
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 4.8e-19 100.1 64 79.7
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 4.1e-18 97.1 75 65.3
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 6.5e-16 89.7 57 77.2
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 5.5e-15 86.7 66 66.7
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 1.4e-13 82.0 45 88.9
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 8.8e-13 79.3 49 81.6
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 4.4e-12 77.0 48 83.3
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 2.8e-11 74.3 69 63.8
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 6.3e-11 73.2 46 78.3
vmacro09568 Vaccinium macrocarpon HOM05D004109 ORTHO05D003511 9.1e-10 69.3 72 59.7
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 4.5e-09 67.0 37 89.2
Zm00001eb213480 Zea mays HOM05D002921 ORTHO05D003258 5.0e-08 63.5 62 62.9
arahy.Tifrunner.gnm1.ann1.E8SK3Y Arachis hypogaea HOM05D004109 ORTHO05D084058 2.1e-06 58.2 33 78.8
vmacro07499 Vaccinium macrocarpon HOM05D004109 ORTHO05D426741 2.7e-06 57.8 71 47.9
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 3.6e-06 57.4 31 80.6
Lsat_1_v5_gn_3_28400 Lactuca sativa HOM05D001423 ORTHO05D048396 6.1e-06 56.6 60 51.7


User provided reference genes

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