Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g071830.3 Solanum lycopersicum HOM05D000730 ORTHO05D026154 3.6e-197 691.4 355 100.0
Sopen02g020820 Solanum pennellii HOM05D000730 ORTHO05D026154 1.8e-71 273.9 215 69.8
Sopen02g020830 Solanum pennellii HOM05D000730 ORTHO05D394019 5.6e-57 225.7 155 82.6
Solyc01g096540.4 Solanum lycopersicum HOM05D000730 ORTHO05D000578 4.9e-53 212.6 363 46.3
Sopen01g040270 Solanum pennellii HOM05D000730 ORTHO05D000578 6.4e-53 212.2 363 46.6
CAN.G134.13 Capsicum annuum HOM05D000730 ORTHO05D000578 4.1e-52 209.5 363 45.5
PGSC0003DMG401001701 Solanum tuberosum HOM05D000730 ORTHO05D000578 3.1e-47 193.4 248 48.4
Peaxi162Scf00082g00018 Petunia axillaris HOM05D000730 ORTHO05D000578 1.7e-45 187.6 363 43.3
Nitab4.5_0002838g0080 Nicotiana tabacum HOM05D000730 ORTHO05D000578 3.0e-42 176.8 363 42.4
Nitab4.5_0005420g0020 Nicotiana tabacum HOM05D000730 ORTHO05D000578 3.0e-42 176.8 363 42.4
Ciclev10003518m.g Citrus clementina HOM05D000730 ORTHO05D000578 5.6e-41 172.6 365 37.0
Cc00_g07550 Coffea canephora HOM05D000730 ORTHO05D000578 9.5e-41 171.8 361 40.7
Duzib128G1742 Durio zibethinus HOM05D000730 ORTHO05D000578 3.6e-40 169.9 334 39.8
COL.COLO4_20721 Corchorus olitorius HOM05D000730 ORTHO05D000578 4.7e-40 169.5 328 39.9
Gorai.009G298800 Gossypium raimondii HOM05D000730 ORTHO05D000578 6.2e-40 169.1 365 38.4
Gohir.D05G284200 Gossypium hirsutum HOM05D000730 ORTHO05D000578 8.1e-40 168.7 365 38.1
Thecc.10G145500 Theobroma cacao HOM05D000730 ORTHO05D000578 3.1e-39 166.8 328 39.6
Aqoxy2G00416 Aquilegia oxysepala HOM05D000730 ORTHO05D000578 4.0e-39 166.4 342 40.6
MD07G1046600 Malus domestica HOM05D000730 ORTHO05D000578 5.2e-39 166.0 357 38.4
Gohir.A05G283200 Gossypium hirsutum HOM05D000730 ORTHO05D000578 8.9e-39 165.2 365 37.8
Atru.chr12.1287 Acer truncatum HOM05D000730 ORTHO05D000578 1.2e-38 164.9 329 40.1
MD02G1278500 Malus domestica HOM05D000730 ORTHO05D000578 1.2e-38 164.9 357 38.4
Prupe.2G042100 Prunus persica HOM05D000730 ORTHO05D000578 1.5e-38 164.5 358 37.7
SGA_v2.0_scaffold124G33604 Striga asiatica HOM05D000730 ORTHO05D000578 1.5e-38 164.5 337 40.9
DCAR_006604 Daucus carota HOM05D000730 ORTHO05D000578 2.0e-38 164.1 331 40.2
Sc10g0004540 Simmondsia chinensis HOM05D000730 ORTHO05D000578 2.0e-38 164.1 358 37.4
CSS0025631 Camellia sinensis var. sinensis HOM05D000730 ORTHO05D000578 2.6e-38 163.7 383 35.8
VMungo1127G0979 Vigna mungo HOM05D000730 ORTHO05D000578 2.6e-38 163.7 363 36.1
GSVIVG01036645001 Vitis vinifera HOM05D000730 ORTHO05D000578 4.4e-38 162.9 361 36.3
Lj3g0012169 Lotus japonicus HOM05D000730 ORTHO05D000578 1.3e-37 161.4 358 36.3
Glyma.13G192900 Glycine max HOM05D000730 ORTHO05D000578 1.7e-37 161.0 363 35.5
Nn7g36786 Nelumbo nucifera HOM05D000730 ORTHO05D000578 1.7e-37 161.0 368 39.1
Glyma.15G230600 Glycine max HOM05D000730 ORTHO05D000578 2.2e-37 160.6 363 35.3
Lalb_Chr19g0132961 Lupinus albus HOM05D000730 ORTHO05D000578 2.9e-37 160.2 363 35.8
Haze_03002 Corylus avellana HOM05D000730 ORTHO05D000578 3.7e-37 159.8 359 38.7
Rhsim07G0068600 Rhododendron simsii HOM05D000730 ORTHO05D000578 3.7e-37 159.8 344 39.5
TWI60G0879 Tripterygium wilfordii HOM05D000730 ORTHO05D000578 3.7e-37 159.8 272 41.9
Potri.001G030100 Populus trichocarpa HOM05D000730 ORTHO05D000578 6.4e-37 159.1 368 36.4
RcHm_v2.0_Chr1g0326411 Rosa chinensis HOM05D000730 ORTHO05D000578 6.4e-37 159.1 358 36.6
arahy.Tifrunner.gnm1.ann1.8I68MQ Arachis hypogaea HOM05D000730 ORTHO05D000578 8.3e-37 158.7 365 35.1
arahy.Tifrunner.gnm1.ann1.H567TY Arachis hypogaea HOM05D000730 ORTHO05D000578 1.4e-36 157.9 363 35.3
FAN10G2667 Fragaria x ananassa HOM05D000730 ORTHO05D000578 2.4e-36 157.1 358 36.3
FvH4_7g03630 Fragaria vesca HOM05D000730 ORTHO05D000578 3.2e-36 156.8 358 37.4
FAN06G3967 Fragaria x ananassa HOM05D000730 ORTHO05D000578 4.1e-36 156.4 358 37.4
CiPaw.13G015400 Carya illinoinensis HOM05D000730 ORTHO05D000578 9.2e-36 155.2 366 37.7
Dinv44710 Davidia involucrata HOM05D000730 ORTHO05D000578 1.6e-35 154.5 335 36.4
Actinidia06224 Actinidia chinensis HOM05D000730 ORTHO05D000578 2.7e-35 153.7 246 43.1
Ca_23976_v3 Cicer arietinum L. HOM05D000730 ORTHO05D000578 2.7e-35 153.7 358 35.2
SalBow5G1057 Salvia bowleyana HOM05D000730 ORTHO05D000578 2.7e-35 153.7 357 35.9
Sabra01G0021600 Salix brachista HOM05D000730 ORTHO05D000578 3.5e-35 153.3 377 38.5
FAN03G3014 Fragaria x ananassa HOM05D000730 ORTHO05D000578 4.6e-35 152.9 358 34.9
TPR.G8523 Trifolium pratense HOM05D000730 ORTHO05D000578 6.0e-35 152.5 359 35.4
CANSAT56G2780 Cannabis sativa HOM05D000730 ORTHO05D000578 1.0e-34 151.8 272 40.4
Phvul.011G201400 Phaseolus vulgaris HOM05D000730 ORTHO05D000578 1.0e-34 151.8 249 43.8
AUR62032627 Chenopodium quinoa HOM05D000730 ORTHO05D000578 1.3e-34 151.4 358 35.8
vmacro07437 Vaccinium macrocarpon HOM05D000730 ORTHO05D000578 1.3e-34 151.4 272 40.4
PGR044G0565 Punica granatum HOM05D000730 ORTHO05D000578 1.7e-34 151.0 359 35.7
Duzib114G0880 Durio zibethinus HOM05D000730 ORTHO05D000578 2.3e-34 150.6 352 37.5
Psat4g145160 Pisum sativum HOM05D000730 ORTHO05D000578 2.3e-34 150.6 368 34.8
Medtr8g040190 Medicago truncatula HOM05D000730 ORTHO05D000578 6.6e-34 149.1 360 35.3
PSO384G0089 Papaver somniferum HOM05D000730 ORTHO05D000578 6.6e-34 149.1 364 35.2
Hund15746 Selenicereus undatus HOM05D000730 ORTHO05D000578 6.6e-34 149.1 317 36.3
Sed0013589 Sechium edule HOM05D000730 ORTHO05D000578 8.6e-34 148.7 358 36.3
EL10Ac2g02767 Beta vulgaris HOM05D000730 ORTHO05D000578 1.5e-33 147.9 358 35.2
Thhalv10012512m.g Eutrema salsugineum HOM05D000730 ORTHO05D000578 1.5e-33 147.9 342 38.0
PSO339G1614 Papaver somniferum HOM05D000730 ORTHO05D000578 1.9e-33 147.5 364 35.2
CARHR206170 Cardamine hirsuta HOM05D000730 ORTHO05D000578 2.5e-33 147.1 346 37.0
Manes.04G156900 Manihot esculenta HOM05D000730 ORTHO05D000578 3.3e-33 146.7 268 40.3
AUR62031742 Chenopodium quinoa HOM05D000730 ORTHO05D000578 9.6e-33 145.2 358 34.6
Cpa.g.sc169.47 Carica papaya HOM05D000730 ORTHO05D000578 1.2e-32 144.8 322 38.2
Eucgr.J00067 Eucalyptus grandis HOM05D000730 ORTHO05D000578 1.6e-32 144.4 328 38.1
Carub.0006s0590 Capsella rubella HOM05D000730 ORTHO05D000578 2.8e-32 143.7 329 37.7
Lsat_1_v5_gn_7_31081 Lactuca sativa HOM05D000730 ORTHO05D000578 1.1e-31 141.7 361 34.3
AL6G17130 Arabidopsis lyrata HOM05D000730 ORTHO05D000578 1.8e-31 141.0 330 37.6
Ah.10g030070 Amaranthus hybridus HOM05D000730 ORTHO05D000578 3.1e-31 140.2 248 40.7
THA.LOC104799323 Tarenaya hassleriana HOM05D000730 ORTHO05D000578 4.0e-31 139.8 338 38.5
C09p69110 Brassica napus HOM05D000730 ORTHO05D000578 5.2e-31 139.4 329 36.5
BolC9t59655H Brassica oleracea HOM05D000730 ORTHO05D000578 5.2e-31 139.4 329 36.5
Sp6g35900 Schrenkiella parvula HOM05D000730 ORTHO05D000578 6.8e-31 139.0 330 37.0
AT5G06970 Arabidopsis thaliana HOM05D000730 ORTHO05D000578 8.9e-31 138.7 236 42.8
A10p28770 Brassica napus HOM05D000730 ORTHO05D000578 1.2e-30 138.3 330 36.4
BcaC06g32528 Brassica carinata HOM05D000730 ORTHO05D000578 1.5e-30 137.9 330 36.1
Migut.B01242 Erythranthe guttata HOM05D000730 ORTHO05D000578 2.6e-30 137.1 361 34.1
Oeu064135.2 Olea europaea HOM05D000730 ORTHO05D000578 2.6e-30 137.1 343 36.7
BcaNung04208 Brassica carinata HOM05D000730 ORTHO05D000578 3.4e-30 136.7 330 36.1
Aa31sc24G200 Aethionema arabicum HOM05D000730 ORTHO05D000578 7.6e-30 135.6 246 41.9
BraA10t44924Z Brassica rapa HOM05D000730 ORTHO05D000578 7.6e-30 135.6 329 36.5
Sopen01g035170 Solanum pennellii HOM05D000730 ORTHO05D026154 7.6e-30 135.6 90 81.1
ClCG05G026970 Citrullus lanatus HOM05D000730 ORTHO05D000578 9.9e-30 135.2 272 37.9
ATR1096G139 Amborella trichopoda HOM05D000730 ORTHO05D000578 2.2e-29 134.0 247 39.7
CsaV3_5G036910 Cucumis sativus L. HOM05D000730 ORTHO05D000578 5.4e-28 129.4 272 37.5
MELO3C012490.2 Cucumis melo HOM05D000730 ORTHO05D000578 1.2e-27 128.3 272 37.1
Zm00001eb285140 Zea mays HOM05D000730 ORTHO05D000578 2.1e-27 127.5 246 38.6
HanXRQChr04g0119551 Helianthus annuus HOM05D000730 ORTHO05D000578 1.0e-26 125.2 356 32.9
Lalb_Chr03g0032161 Lupinus albus HOM05D000730 ORTHO05D000578 1.7e-26 124.4 237 41.4
ECA236G3986 Erigeron canadensis HOM05D000730 ORTHO05D000578 3.9e-26 123.2 361 33.5
BcaB05g25310 Brassica carinata HOM05D000730 ORTHO05D000578 2.8e-24 117.1 285 36.8
Pp3c7_24310 Physcomitrium patens HOM05D000730 ORTHO05D000578 3.1e-23 113.6 248 33.5
PGSC0003DMG402006827 Solanum tuberosum HOM05D000730 ORTHO05D026154 2.2e-21 107.5 64 87.5
MBI19_g36134_MAGBIO Magnolia biondii HOM05D000730 ORTHO05D000578 3.8e-21 106.7 246 35.0
AagrBONN_evm.TU.Sc2ySwM_344.4217 Anthoceros agrestis HOM05D000730 ORTHO05D000578 6.4e-21 105.9 258 35.3
HPP92_021195 Vanilla planifolia HOM05D000730 ORTHO05D000578 1.9e-20 104.4 261 34.1
PGSC0003DMG401006827 Solanum tuberosum HOM05D000730 ORTHO05D000578 5.4e-20 102.8 58 79.3
SMO116G0331 Selaginella moellendorffii HOM05D000730 ORTHO05D000578 1.6e-19 101.3 336 29.8
Mapoly0125s0045 Marchantia polymorpha HOM05D000730 ORTHO05D000578 3.5e-19 100.1 253 32.8
Lsat_1_v5_gn_4_48181 Lactuca sativa HOM05D004809 ORTHO05D006732 1.9e-17 94.4 228 33.8
Lj9A659G48 Lonicera japonica HOM05D000730 ORTHO05D000578 1.9e-17 94.4 186 41.9
CDE09G0864 Ceratophyllum demersum HOM05D000730 ORTHO05D000578 7.3e-17 92.4 320 31.2
Lsat_1_v5_gn_3_52940 Lactuca sativa HOM05D000730 ORTHO05D000578 4.8e-16 89.7 123 44.7
Lsat_1_v5_gn_3_5660 Lactuca sativa HOM05D000730 ORTHO05D000578 4.8e-16 89.7 123 44.7
Lsat_1_v5_gn_9_93581 Lactuca sativa HOM05D000730 ORTHO05D000578 4.8e-16 89.7 123 44.7
Lsat_1_v5_gn_9_14041 Lactuca sativa HOM05D004809 ORTHO05D006732 6.2e-16 89.4 228 32.9
Hma1.2p1_0121F.1_g057430 Hydrangea macrophylla HOM05D000730 ORTHO05D000578 1.1e-15 88.6 50 80.0
unitig_749.g14334 Utricularia gibba HOM05D000730 ORTHO05D000578 2.4e-15 87.4 309 30.1
Lj9A659T52 Lonicera japonica HOM05D000730 ORTHO05D000578 4.0e-15 86.7 50 76.0
Lalb_Chr01g0007381 Lupinus albus HOM05D000730 ORTHO05D000578 6.9e-15 85.9 123 39.8
Lsat_1_v5_gn_5_50861 Lactuca sativa HOM05D000730 ORTHO05D000578 2.0e-14 84.3 123 43.1
Solyc01g088330.1 Solanum lycopersicum HOM05D000730 ORTHO05D026154 3.8e-13 80.1 47 87.2
Prupe.5G093000 Prunus persica HOM05D000730 ORTHO05D000578 1.1e-12 78.6 238 29.0
FvH4_5g01750 Fragaria vesca HOM05D000730 ORTHO05D000578 3.2e-12 77.0 238 26.9
FAN04G2748 Fragaria x ananassa HOM05D000730 ORTHO05D000578 3.2e-12 77.0 238 26.9
BcaB05g25314 Brassica carinata HOM05D000730 ORTHO05D000578 4.2e-12 76.6 261 33.7
FAN18G2185 Fragaria x ananassa HOM05D000730 ORTHO05D000578 5.5e-12 76.3 238 26.9
Lalb_Chr01g0007391 Lupinus albus HOM05D000730 ORTHO05D000578 3.5e-11 73.6 76 57.9
RcHm_v2.0_Chr7g0198971 Rosa chinensis HOM05D000730 ORTHO05D000578 4.6e-11 73.2 235 27.2
FAN08G1404 Fragaria x ananassa HOM05D000730 ORTHO05D000578 6.0e-11 72.8 235 26.4
TAR375G0386 Trochodendron aralioides HOM05D000730 ORTHO05D000578 8.7e-10 68.9 239 26.8
MD00G1110400 Malus domestica HOM05D000730 ORTHO05D000578 1.1e-09 68.6 237 25.7
Potri.001G108400 Populus trichocarpa HOM05D000730 ORTHO05D000578 4.3e-09 66.6 227 25.6
Nn6g34206 Nelumbo nucifera HOM05D000730 ORTHO05D000578 7.4e-09 65.9 240 29.2
Sabra01G0081900 Salix brachista HOM05D000730 ORTHO05D000578 7.4e-09 65.9 242 25.2
Atru.chr9.1560 Acer truncatum HOM05D000730 ORTHO05D000578 2.8e-08 63.9 232 27.2
CBR_g23529 Chara braunii HOM05D000730 ORTHO05D000578 1.1e-07 62.0 240 26.7
Manes.01G065400 Manihot esculenta HOM05D000730 ORTHO05D000578 1.4e-07 61.6 237 29.1
GSVIVG01019827001 Vitis vinifera HOM05D000730 ORTHO05D000578 1.4e-07 61.6 228 25.9
ATR0757G158 Amborella trichopoda HOM05D000730 ORTHO05D000578 2.4e-07 60.8 225 24.0
SHI11373 Sapria himalayana HOM05D000730 ORTHO05D000578 4.0e-07 60.1 74 43.2
QL02p042190 Quercus lobata HOM05D000730 ORTHO05D000578 6.9e-07 59.3 260 25.0
Cfa012119 Carpinus fangiana HOM05D000730 ORTHO05D000578 1.2e-06 58.5 235 26.4
Actinidia02031 Actinidia chinensis HOM05D000730 ORTHO05D000578 2.6e-06 57.4 235 28.5
DCAR_004665 Daucus carota HOM05D000730 ORTHO05D000578 4.5e-06 56.6 234 25.2
CANSAT21G0309 Cannabis sativa HOM05D000730 ORTHO05D000578 5.8e-06 56.2 235 26.8
Haze_08931 Corylus avellana HOM05D000730 ORTHO05D000578 5.8e-06 56.2 235 26.0
Sc22g0000270 Simmondsia chinensis HOM05D000730 ORTHO05D000578 5.8e-06 56.2 233 25.3
COL.COLO4_05255 Corchorus olitorius HOM05D000730 ORTHO05D000578 7.6e-06 55.8 227 23.3
Migut.A00938 Erythranthe guttata HOM05D000730 ORTHO05D000578 7.6e-06 55.8 225 27.1
HanXRQChr06g0165441 Helianthus annuus HOM05D000730 ORTHO05D000578 1.0e-05 55.5 233 24.9


User provided reference genes

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