Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g070900.1 Solanum lycopersicum HOM05D008090 ORTHO05D010156 2.6e-124 448.7 227 100.0
Sopen02g019980 Solanum pennellii HOM05D008090 ORTHO05D010156 6.6e-112 407.5 227 91.6
PGSC0003DMG400008320 Solanum tuberosum HOM05D008090 ORTHO05D010156 1.5e-108 396.4 227 88.1
CAN.G257.11 Capsicum annuum HOM05D008090 ORTHO05D010156 1.3e-96 356.7 228 78.5
Nitab4.5_0029367g0010 Nicotiana tabacum HOM05D008090 ORTHO05D010156 6.0e-89 331.3 230 78.7
Peaxi162Scf00347g00042 Petunia axillaris HOM05D008090 ORTHO05D010156 9.0e-61 237.7 230 60.9
Nitab4.5_0006300g0040 Nicotiana tabacum HOM05D008090 ORTHO05D010156 1.3e-59 233.8 164 78.7
Dinv30710 Davidia involucrata HOM05D000133 ORTHO05D010156 6.1e-49 198.4 244 51.2
Haze_05542 Corylus avellana HOM05D008090 ORTHO05D010156 9.7e-47 191.0 233 49.8
MSTRG.7470 Avicennia marina HOM05D008090 ORTHO05D010156 1.1e-45 187.6 240 49.6
Sopen02g020000 Solanum pennellii HOM05D008090 ORTHO05D010156 1.1e-45 187.6 156 65.4
Migut.M00932 Erythranthe guttata HOM05D008090 ORTHO05D010156 7.0e-45 184.9 247 48.2
Lj1P1184T52 Lonicera japonica HOM05D008090 ORTHO05D010156 2.0e-44 183.3 236 50.0
Cfa000975 Carpinus fangiana HOM05D008090 ORTHO05D010156 2.6e-44 183.0 233 50.6
Cc09_g09530 Coffea canephora HOM05D008090 ORTHO05D010156 1.3e-43 180.6 225 49.8
RcHm_v2.0_Chr5g0013271 Rosa chinensis HOM05D008090 ORTHO05D010156 3.2e-42 176.0 235 48.1
Prupe.4G076400 Prunus persica HOM05D008090 ORTHO05D010156 2.1e-41 173.3 238 47.1
RcHm_v2.0_Chr5g0013301 Rosa chinensis HOM05D008090 ORTHO05D010156 6.1e-41 171.8 236 47.5
FAN16G3306 Fragaria x ananassa HOM05D008090 ORTHO05D010156 3.0e-40 169.5 239 46.4
Manes.17G067400 Manihot esculenta HOM05D008090 ORTHO05D010156 1.1e-39 167.5 240 47.1
FAN25G1154 Fragaria x ananassa HOM05D008090 ORTHO05D010156 1.5e-39 167.2 240 45.0
Rhsim13G0192500 Rhododendron simsii HOM05D008090 ORTHO05D010156 5.7e-39 165.2 239 48.1
Sc17g0005080 Simmondsia chinensis HOM05D008090 ORTHO05D010156 9.7e-39 164.5 244 43.4
AUR62035141 Chenopodium quinoa HOM05D008090 ORTHO05D010156 1.8e-37 160.2 229 46.3
ClCG03G006940 Citrullus lanatus HOM05D008090 ORTHO05D010156 1.8e-37 160.2 241 44.4
MD05G1289100 Malus domestica HOM05D008090 ORTHO05D010156 3.1e-37 159.5 236 44.9
Gohir.D06G141600 Gossypium hirsutum HOM05D008090 ORTHO05D010156 4.1e-37 159.1 229 48.5
Gorai.010G165200 Gossypium raimondii HOM05D008090 ORTHO05D010156 4.1e-37 159.1 229 48.5
QL05p059335 Quercus lobata HOM05D008090 ORTHO05D010156 5.3e-37 158.7 241 43.6
TAR629G2487 Trochodendron aralioides HOM05D008090 ORTHO05D010156 5.3e-37 158.7 240 45.4
Potri.004G065500 Populus trichocarpa HOM05D008090 ORTHO05D010156 7.0e-37 158.3 228 46.1
Lj4g0014733 Lotus japonicus HOM05D008090 ORTHO05D010156 1.6e-36 157.1 237 46.0
Sabra04G0043800 Salix brachista HOM05D008090 ORTHO05D010156 2.6e-36 156.4 220 46.8
Hund17789 Selenicereus undatus HOM05D008090 ORTHO05D010156 2.6e-36 156.4 232 45.7
Gohir.A06G136400 Gossypium hirsutum HOM05D008090 ORTHO05D010156 5.9e-36 155.2 229 48.0
FAN11G2783 Fragaria x ananassa HOM05D000133 ORTHO05D010156 7.7e-36 154.8 237 43.5
EL10Ac4g09546 Beta vulgaris HOM05D008090 ORTHO05D010156 1.7e-35 153.7 232 45.7
Nn3g17305 Nelumbo nucifera HOM05D008090 ORTHO05D010156 2.2e-35 153.3 238 42.0
Thecc.06G154700 Theobroma cacao HOM05D008090 ORTHO05D010156 2.9e-35 152.9 239 46.0
MBI07_g21779_MAGBIO Magnolia biondii HOM05D008090 ORTHO05D010156 5.0e-35 152.1 231 44.6
COL.COLO4_06066 Corchorus olitorius HOM05D008090 ORTHO05D010156 1.1e-34 151.0 234 46.2
Lj2P974T32 Lonicera japonica HOM05D008090 ORTHO05D010156 1.1e-34 151.0 216 48.1
Psat7g091840 Pisum sativum HOM05D008090 ORTHO05D010156 1.6e-33 147.1 226 43.8
Lalb_Chr03g0037351 Lupinus albus HOM05D008090 ORTHO05D010156 3.6e-33 146.0 225 41.8
arahy.Tifrunner.gnm1.ann1.548L12 Arachis hypogaea HOM05D008090 ORTHO05D010156 6.1e-33 145.2 216 45.8
CsaV3_1G032520 Cucumis sativus L. HOM05D008090 ORTHO05D010156 1.0e-32 144.4 237 42.6
MELO3C002726.2 Cucumis melo HOM05D008090 ORTHO05D010156 2.3e-32 143.3 234 42.7
Medtr4g094608 Medicago truncatula HOM05D008090 ORTHO05D010156 5.2e-32 142.1 226 43.8
Ah.00g001040 Amaranthus hybridus HOM05D008090 ORTHO05D010156 2.0e-31 140.2 227 41.0
arahy.Tifrunner.gnm1.ann1.S5KLBV Arachis hypogaea HOM05D008090 ORTHO05D010156 2.0e-31 140.2 218 43.1
Phvul.002G196300 Phaseolus vulgaris HOM05D008090 ORTHO05D010156 2.6e-31 139.8 216 45.4
Sed0014565 Sechium edule HOM05D008090 ORTHO05D010156 2.6e-31 139.8 243 42.0
SGA_v2.0_scaffold1G00152 Striga asiatica HOM05D008090 ORTHO05D010156 4.4e-31 139.0 235 41.7
DCAR_003940 Daucus carota HOM05D000013 ORTHO05D010156 7.5e-31 138.3 158 54.4
PGSC0003DMG400008321 Solanum tuberosum HOM05D008090 ORTHO05D010156 4.8e-30 135.6 79 84.8
CANSAT35G0881 Cannabis sativa HOM05D008090 ORTHO05D010156 6.3e-30 135.2 233 43.8
TPR.G4884 Trifolium pratense HOM05D000133 ORTHO05D000259 6.3e-30 135.2 229 43.2
FvH4_3g06110 Fragaria vesca HOM05D000133 ORTHO05D000259 1.4e-29 134.0 180 46.7
Glyma.05G128100 Glycine max HOM05D008090 ORTHO05D010156 1.8e-29 133.7 224 43.8
TAR629G3101 Trochodendron aralioides HOM05D008090 ORTHO05D010156 2.7e-28 129.8 198 44.9
Aqoxy4G00119 Aquilegia oxysepala HOM05D008090 ORTHO05D010156 4.5e-28 129.0 229 38.4
ECA234G1353 Erigeron canadensis HOM05D008090 ORTHO05D010156 4.5e-28 129.0 216 41.7
Oeu019949.1 Olea europaea HOM05D008090 ORTHO05D010156 1.3e-27 127.5 107 61.7
Lsat_1_v5_gn_4_30220 Lactuca sativa HOM05D008090 ORTHO05D010156 2.7e-25 119.8 236 39.4
VMungo0251G0641 Vigna mungo HOM05D008090 ORTHO05D010156 6.1e-25 118.6 219 39.7
Ca_18277_v3 Cicer arietinum L. HOM05D000133 ORTHO05D000259 8.0e-25 118.2 166 44.0
TWI09G1028 Tripterygium wilfordii HOM05D008090 ORTHO05D010156 8.0e-25 118.2 237 40.1
MBI19_g47931_MAGBIO Magnolia biondii HOM05D008090 ORTHO05D010156 1.6e-20 104.0 179 40.8
HanXRQChr17g0565011 Helianthus annuus HOM05D008090 ORTHO05D010156 4.5e-20 102.4 214 35.5
Os01g0243600 Oryza sativa ssp. japonica HOM05D008090 ORTHO05D010156 7.2e-18 95.1 233 36.1
Actinidia19510 Actinidia chinensis HOM05D008090 ORTHO05D010156 7.5e-15 85.1 148 43.2
SEGI_25907 Sequoiadendron giganteum HOM05D008090 ORTHO05D010156 4.1e-13 79.3 225 28.9
Ciclev10027155m.g Citrus clementina HOM05D008090 ORTHO05D010156 3.5e-12 76.3 205 29.8
ATR0681G183 Amborella trichopoda HOM05D008090 ORTHO05D010156 7.8e-12 75.1 218 31.7
Zm00001eb079770 Zea mays HOM05D008090 ORTHO05D010156 9.5e-10 68.2 87 43.7
Atru.chr10.1349 Acer truncatum HOM05D008090 ORTHO05D010156 2.6e-07 60.1 86 45.3


User provided reference genes

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