Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 3870.9 1947 100.0
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 3788.4 1947 98.2
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 3765.7 1947 97.5
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 3465.2 1948 89.4
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 3414.8 1966 87.3
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 3373.2 1962 86.4
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 3249.9 1950 83.5
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2478.4 1964 64.1
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2375.5 2050 60.0
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 2345.9 1947 59.8
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2330.8 1957 59.8
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2319.7 1944 60.7
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2315.4 1958 59.8
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 2310.8 1952 60.0
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2295.8 1966 59.1
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2285.8 1966 59.2
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2277.3 1958 58.7
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2265.7 2157 55.0
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 2265.7 1946 59.2
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2233.4 1959 57.9
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2228.0 1966 57.9
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2215.7 1957 57.5
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2211.0 1971 58.4
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2209.9 1960 57.5
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2207.2 1984 57.6
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2206.0 1958 57.0
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2205.3 1956 56.9
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2202.9 1954 57.4
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2199.9 1960 56.5
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2191.4 1956 57.3
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 2190.6 1951 57.6
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 2189.5 1965 57.4
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2182.5 1941 56.4
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2180.6 1957 56.6
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2180.6 1941 56.5
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 2179.4 1947 57.7
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2168.7 1937 57.0
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 2168.7 2128 53.9
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2167.9 1956 55.9
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2167.1 1949 56.3
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2166.7 1934 58.0
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2162.5 1964 56.2
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2128.2 1983 55.6
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2115.5 1966 54.7
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2108.6 1859 57.2
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2108.2 1969 54.3
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 2100.1 1966 54.8
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2067.0 2157 51.2
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 2057.7 1963 55.6
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 2053.5 2255 48.3
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 2053.1 1938 54.4
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 2052.3 1963 55.1
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2026.5 1820 55.9
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2020.4 1961 53.5
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 2015.7 1965 54.0
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 2011.1 1964 53.3
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 2008.8 1968 52.9
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 2002.6 1962 52.9
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 1997.6 1965 52.8
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 1997.6 1961 52.7
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1994.9 1960 53.2
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1993.4 1811 56.3
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 1991.5 1977 52.8
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1979.5 1962 52.5
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 1977.2 1975 52.4
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 1976.4 1964 52.4
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 1971.4 1964 52.5
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1961.8 1990 52.0
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1958.7 1990 51.8
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 1958.0 1994 50.7
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 1926.8 1600 61.2
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1923.3 1939 51.6
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1895.6 1973 50.7
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1856.3 1936 50.2
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1850.9 1948 51.1
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1798.1 1839 51.8
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1750.7 1993 46.8
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1655.6 1275 64.3
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1475.3 1180 62.5
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1381.3 1276 56.9
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1362.4 1838 41.9
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1289.2 1433 48.2
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1213.7 2014 37.3
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1200.3 2062 36.3
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1183.7 1080 56.0
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1147.1 2021 36.7
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1132.5 1168 52.5
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 2.9e-309 1066.2 1003 54.5
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 2.2e-288 996.9 2148 33.3
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 2.8e-259 900.2 759 60.1
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 1.3e-253 881.3 949 50.7
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 8.2e-235 818.9 888 49.1
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 4.2e-231 806.6 1011 44.6
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 5.5e-231 806.2 774 53.0
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 2.6e-225 787.3 1122 41.0
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 6.5e-224 782.7 981 45.1
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 8.9e-181 639.4 490 66.5
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 2.0e-180 638.3 669 52.5
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 4.4e-164 583.9 525 55.6
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 4.9e-163 580.5 532 56.4
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 2.3e-152 545.0 520 55.6
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 1.9e-130 472.2 451 53.2
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 1.8e-128 465.7 399 58.9
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 1.4e-125 456.1 432 53.0
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 1.8e-125 455.7 655 42.0
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 8.2e-118 430.3 299 71.6
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 1.5e-111 409.5 849 32.2
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.4e-88 333.2 396 44.9
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 2.3e-88 332.4 336 51.5
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 3.3e-87 328.6 215 75.8
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 9.7e-87 327.0 255 60.8
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 3.2e-82 312.0 335 53.7
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 1.7e-67 263.1 374 41.7
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 2.8e-65 255.8 231 55.8
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 7.8e-60 237.7 231 53.7
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.9e-53 216.5 311 41.2
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 4.1e-53 215.3 195 55.4
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 2.7e-52 212.6 294 40.1
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 3.0e-51 209.1 195 53.3
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 1.9e-50 206.5 524 30.5
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 1.6e-44 186.8 185 49.7
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 8.9e-40 171.0 297 36.7
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 1.3e-30 140.6 140 52.9
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 2.7e-28 132.9 278 33.8
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 1.3e-27 130.6 222 37.4
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 1.6e-25 123.6 125 48.8
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 8.1e-25 121.3 140 49.3
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 1.4e-24 120.6 127 50.4
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 1.8e-24 120.2 97 61.9
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.2e-23 117.5 159 43.4
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 7.6e-23 114.8 114 50.9
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 6.0e-20 105.1 290 28.6
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 1.3e-19 104.0 285 27.7
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 1.7e-19 103.6 100 52.0
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 3.6e-17 95.9 99 48.5
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 9.0e-16 91.3 141 36.9
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 2.6e-15 89.7 74 58.1
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 2.6e-15 89.7 74 58.1
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 5.8e-15 88.6 74 56.8
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 1.3e-14 87.4 178 32.6
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 2.2e-14 86.7 135 37.8
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 2.9e-14 86.3 132 39.4
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 6.4e-14 85.1 99 45.5
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.1e-13 84.3 75 49.3
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 1.9e-13 83.6 135 37.0
Psat7g053800 Pisum sativum HOM05D001135 ORTHO05D001005 2.4e-13 83.2 133 35.3
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 2.1e-12 80.1 88 42.0
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 1.0e-11 77.8 136 36.0
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 3.9e-11 75.9 204 26.5
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 8.7e-11 74.7 114 39.5
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 7.4e-10 71.6 92 42.4
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 3.7e-09 69.3 133 33.8
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 1.4e-08 67.4 73 38.4
Psat4g170200 Pisum sativum HOM05D003662 ORTHO05D001824 2.4e-08 66.6 55 52.7
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 6.9e-08 65.1 48 60.4
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 1.2e-07 64.3 73 41.1
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 1.2e-07 64.3 54 57.4
Psat7g026160 Pisum sativum HOM05D004963 ORTHO05D001824 4.5e-07 62.4 59 47.5
SMO144G0155 Selaginella moellendorffii HOM05D004963 ORTHO05D379285 5.8e-07 62.0 152 34.2
Actinidia30715 Actinidia chinensis HOM05D004963 ORTHO05D006638 7.6e-07 61.6 111 36.0
Zm00001eb150600 Zea mays HOM05D004963 ORTHO05D006638 8.4e-06 58.2 64 37.5


User provided reference genes

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