Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g070680.4 Solanum lycopersicum HOM05D006198 ORTHO05D008226 4.0e-111 404.8 211 100.0
Sopen02g019760 Solanum pennellii HOM05D006198 ORTHO05D008226 1.0e-106 390.2 206 98.5
PGSC0003DMG401008288 Solanum tuberosum HOM05D006198 ORTHO05D008226 9.8e-102 373.6 209 95.7
Nitab4.5_0001655g0050 Nicotiana tabacum HOM05D006198 ORTHO05D008226 3.7e-93 345.1 202 91.1
CAN.G650.24 Capsicum annuum HOM05D006198 ORTHO05D008226 4.9e-93 344.7 204 90.7
Nitab4.5_0005219g0070 Nicotiana tabacum HOM05D006198 ORTHO05D008226 6.4e-93 344.4 202 89.6
Peaxi162Scf00796g00114 Petunia axillaris HOM05D006198 ORTHO05D008226 1.6e-72 276.6 201 77.1
MSTRG.16229 Avicennia marina HOM05D006198 ORTHO05D008226 6.9e-63 244.6 207 67.1
Dinv30723 Davidia involucrata HOM05D006198 ORTHO05D008226 4.9e-61 238.4 205 67.3
SalBow8G2100 Salvia bowleyana HOM05D006198 ORTHO05D008226 1.9e-60 236.5 209 63.6
Lj2A307G26 Lonicera japonica HOM05D006198 ORTHO05D008226 6.0e-59 231.5 207 67.1
SGA_v2.0_scaffold1G00157 Striga asiatica HOM05D006198 ORTHO05D008226 1.3e-58 230.3 201 65.2
SGA_v2.0_scaffold333G48994 Striga asiatica HOM05D006198 ORTHO05D008226 1.8e-58 229.9 210 64.3
Migut.M00923 Erythranthe guttata HOM05D006198 ORTHO05D008226 3.0e-58 229.2 208 63.9
Manes.15G120300 Manihot esculenta HOM05D006198 ORTHO05D008226 8.7e-58 227.6 204 65.7
RcHm_v2.0_Chr5g0013711 Rosa chinensis HOM05D006198 ORTHO05D008226 1.5e-57 226.9 205 63.9
TAR629G2249 Trochodendron aralioides HOM05D006198 ORTHO05D008226 1.9e-57 226.5 208 63.9
FAN16G3463 Fragaria x ananassa HOM05D006198 ORTHO05D008226 4.3e-57 225.3 205 63.9
Duzib160G0456 Durio zibethinus HOM05D006198 ORTHO05D008226 9.6e-57 224.2 208 63.9
Atru.chr10.1293 Acer truncatum HOM05D006198 ORTHO05D008226 1.3e-56 223.8 208 63.9
FvH4_3g05790 Fragaria vesca HOM05D006198 ORTHO05D008226 2.1e-56 223.0 205 62.9
TAR629G0041 Trochodendron aralioides HOM05D006198 ORTHO05D008226 2.1e-56 223.0 208 63.5
ECA248G2800 Erigeron canadensis HOM05D006198 ORTHO05D008226 3.7e-56 222.2 205 61.5
Thecc.06G152500 Theobroma cacao HOM05D006198 ORTHO05D008226 1.1e-55 220.7 208 64.4
CiPaw.09G125600 Carya illinoinensis HOM05D006198 ORTHO05D008226 1.4e-55 220.3 201 63.7
Cpa.g.sc166.25 Carica papaya HOM05D006198 ORTHO05D008226 2.4e-55 219.5 207 63.3
Nn6g32274 Nelumbo nucifera HOM05D006198 ORTHO05D008226 3.1e-55 219.2 207 63.8
Nn3g20699 Nelumbo nucifera HOM05D006198 ORTHO05D008226 6.9e-55 218.0 207 62.8
Atru.chr10.1313 Acer truncatum HOM05D006198 ORTHO05D008226 9.0e-55 217.6 208 62.5
arahy.Tifrunner.gnm1.ann1.8B838V Arachis hypogaea HOM05D006198 ORTHO05D008226 9.0e-55 217.6 203 61.6
arahy.Tifrunner.gnm1.ann1.ET305C Arachis hypogaea HOM05D006198 ORTHO05D008226 9.0e-55 217.6 203 61.6
DCAR_025303 Daucus carota HOM05D006198 ORTHO05D008226 1.5e-54 216.9 206 58.7
Lalb_Chr12g0208941 Lupinus albus HOM05D006198 ORTHO05D008226 1.5e-54 216.9 207 61.8
ClCG01G024530 Citrullus lanatus HOM05D006198 ORTHO05D008226 2.0e-54 216.5 207 61.4
TWI09G1426 Tripterygium wilfordii HOM05D006198 ORTHO05D008226 2.0e-54 216.5 205 62.4
Aa31LG6G950 Aethionema arabicum HOM05D006198 ORTHO05D008226 2.6e-54 216.1 207 63.3
FAN11G0340 Fragaria x ananassa HOM05D006198 ORTHO05D008226 3.4e-54 215.7 205 61.5
MELO3C007142.2 Cucumis melo HOM05D006198 ORTHO05D008226 4.5e-54 215.3 207 59.9
Eucgr.E02394 Eucalyptus grandis HOM05D006198 ORTHO05D008226 4.5e-54 215.3 206 62.6
TWI53G0219 Tripterygium wilfordii HOM05D006198 ORTHO05D008226 4.5e-54 215.3 206 62.6
Atru.chr10.1297 Acer truncatum HOM05D006198 ORTHO05D008226 5.8e-54 214.9 208 62.0
Cc09_g09250 Coffea canephora HOM05D006198 ORTHO05D008226 7.6e-54 214.5 186 65.1
QL05p058855 Quercus lobata HOM05D006198 ORTHO05D008226 7.6e-54 214.5 210 60.5
Hma1.2p1_0259F.1_g104290 Hydrangea macrophylla HOM05D006198 ORTHO05D008226 1.3e-53 213.8 203 64.0
COL.COLO4_38286 Corchorus olitorius HOM05D006198 ORTHO05D008226 1.7e-53 213.4 212 61.3
Potri.011G080300 Populus trichocarpa HOM05D006198 ORTHO05D008226 1.7e-53 213.4 208 59.6
CsaV3_6G051650 Cucumis sativus L. HOM05D006198 ORTHO05D008226 2.2e-53 213.0 207 59.4
Haze_05575 Corylus avellana HOM05D006198 ORTHO05D008226 2.9e-53 212.6 202 63.4
Actinidia39563 Actinidia chinensis HOM05D006198 ORTHO05D008226 6.5e-53 211.5 206 61.2
HanXRQChr01g0020411 Helianthus annuus HOM05D006198 ORTHO05D008226 6.5e-53 211.5 203 61.1
Lsat_1_v5_gn_1_96760 Lactuca sativa HOM05D006198 ORTHO05D008226 1.4e-52 210.3 204 60.3
MD10G1263800 Malus domestica HOM05D006198 ORTHO05D008226 1.4e-52 210.3 201 60.7
Gohir.D09G077900 Gossypium hirsutum HOM05D006198 ORTHO05D008226 4.2e-52 208.8 209 60.8
EL10Ac8g19743 Beta vulgaris HOM05D006198 ORTHO05D008226 5.5e-52 208.4 205 59.5
Actinidia07684 Actinidia chinensis HOM05D006198 ORTHO05D008226 7.1e-52 208.0 202 60.9
unitig_578.g16668 Utricularia gibba HOM05D006198 ORTHO05D008226 1.6e-51 206.8 210 59.0
Gohir.A09G077700 Gossypium hirsutum HOM05D006198 ORTHO05D008226 2.1e-51 206.5 209 60.3
BolC7t45461H Brassica oleracea HOM05D006198 ORTHO05D003063 3.5e-51 205.7 210 62.4
AUR62030229 Chenopodium quinoa HOM05D006198 ORTHO05D008226 3.5e-51 205.7 207 59.4
Thhalv10024846m.g Eutrema salsugineum HOM05D006198 ORTHO05D003063 3.5e-51 205.7 204 61.8
vmacro15943 Vaccinium macrocarpon HOM05D006198 ORTHO05D008226 3.5e-51 205.7 207 58.5
Prupe.4G078700 Prunus persica HOM05D006198 ORTHO05D008226 6.0e-51 204.9 208 59.1
AL7G36130 Arabidopsis lyrata HOM05D006198 ORTHO05D003063 7.9e-51 204.5 209 59.8
Lj4g0025062 Lotus japonicus HOM05D006198 ORTHO05D003063 7.9e-51 204.5 207 59.9
PGR083G0877 Punica granatum HOM05D006198 ORTHO05D008226 1.3e-50 203.8 204 57.4
Sed0015649 Sechium edule HOM05D006198 ORTHO05D008226 1.8e-50 203.4 205 57.6
PSO017G1039 Papaver somniferum HOM05D006198 ORTHO05D008226 2.3e-50 203.0 206 60.2
C07p49570 Brassica napus HOM05D006198 ORTHO05D003063 3.9e-50 202.2 210 61.4
Carub.0007s2303 Capsella rubella HOM05D006198 ORTHO05D008226 3.9e-50 202.2 208 59.1
A03p51170 Brassica napus HOM05D006198 ORTHO05D003063 5.1e-50 201.8 210 61.0
PSO170G0869 Papaver somniferum HOM05D006198 ORTHO05D008226 5.1e-50 201.8 206 60.2
Sp7g15810 Schrenkiella parvula HOM05D006198 ORTHO05D008226 5.1e-50 201.8 202 61.4
BraA03t14199Z Brassica rapa HOM05D006198 ORTHO05D003063 6.7e-50 201.4 210 61.0
Gorai.006G093100 Gossypium raimondii HOM05D006198 ORTHO05D008226 8.7e-50 201.1 209 59.3
Ca_18268_v3 Cicer arietinum L. HOM05D006198 ORTHO05D008226 5.7e-49 198.4 206 59.2
Psat7g090320 Pisum sativum HOM05D006198 ORTHO05D008226 5.7e-49 198.4 202 61.9
Sabra11G0070000 Salix brachista HOM05D006198 ORTHO05D008226 1.3e-48 197.2 209 56.5
Medtr4g096750 Medicago truncatula HOM05D006198 ORTHO05D008226 1.6e-48 196.8 200 59.0
THA.LOC104827723 Tarenaya hassleriana HOM05D006198 ORTHO05D008226 1.6e-48 196.8 212 57.1
Sabra11G0067700 Salix brachista HOM05D006198 ORTHO05D008226 2.8e-48 196.1 209 56.5
Ciclev10016356m.g Citrus clementina HOM05D006198 ORTHO05D008226 3.7e-48 195.7 205 59.0
Sc24g0001850 Simmondsia chinensis HOM05D006198 ORTHO05D008226 6.2e-48 194.9 209 58.4
Aqoxy4G00108 Aquilegia oxysepala HOM05D006198 ORTHO05D008226 1.4e-47 193.7 204 55.4
AUR62027530 Chenopodium quinoa HOM05D006198 ORTHO05D008226 1.4e-47 193.7 195 60.5
CANSAT35G1481 Cannabis sativa HOM05D006198 ORTHO05D008226 1.8e-47 193.4 202 57.4
Glyma.15G190700 Glycine max HOM05D006198 ORTHO05D008226 5.3e-47 191.8 200 58.0
MBI10_g21114_MAGBIO Magnolia biondii HOM05D006198 ORTHO05D008226 9.0e-47 191.0 207 56.0
Phvul.009G219000 Phaseolus vulgaris HOM05D006198 ORTHO05D008226 9.0e-47 191.0 208 54.8
Glyma.09G082200 Glycine max HOM05D006198 ORTHO05D008226 7.6e-46 188.0 203 58.1
GSVIVG01021428001 Vitis vinifera HOM05D006198 ORTHO05D008226 7.6e-46 188.0 184 60.3
VMungo1309G2860 Vigna mungo HOM05D006198 ORTHO05D008226 1.3e-45 187.2 208 55.3
CDE02G2137 Ceratophyllum demersum HOM05D006198 ORTHO05D008226 5.5e-44 181.8 204 53.4
Cfa000959 Carpinus fangiana HOM05D006198 ORTHO05D008226 7.1e-44 181.4 184 60.9
Oeu030914.3 Olea europaea HOM05D006198 ORTHO05D008226 9.3e-44 181.0 250 48.4
Os01g0666500 Oryza sativa ssp. japonica HOM05D006198 ORTHO05D008226 9.3e-44 181.0 206 53.9
ATR0585G073 Amborella trichopoda HOM05D006198 ORTHO05D008226 2.1e-43 179.9 208 52.9
SEGI_09220 Sequoiadendron giganteum HOM05D006198 ORTHO05D008226 2.3e-42 176.4 210 52.9
BcaNung05123 Brassica carinata HOM05D006198 ORTHO05D008226 3.0e-42 176.0 187 58.3
Zm00001eb157440 Zea mays HOM05D006198 ORTHO05D008226 1.9e-41 173.3 204 51.5
Zm00001eb359760 Zea mays HOM05D006198 ORTHO05D008226 7.4e-41 171.4 195 52.8
BcaNung05671 Brassica carinata HOM05D006198 ORTHO05D008226 2.8e-40 169.5 187 58.3
HPP92_023299 Vanilla planifolia HOM05D006198 ORTHO05D008226 6.3e-40 168.3 204 51.5
HPP92_023266 Vanilla planifolia HOM05D006198 ORTHO05D008226 2.4e-39 166.4 204 51.0
Rhsim02G0156800 Rhododendron simsii HOM05D006198 ORTHO05D008226 3.2e-36 156.0 197 49.7
Pp3c24_15440 Physcomitrium patens HOM05D006198 ORTHO05D008226 7.4e-33 144.8 191 46.1
AagrBONN_evm.TU.Sc2ySwM_228.4358 Anthoceros agrestis HOM05D006198 ORTHO05D008226 1.3e-32 144.1 196 45.9
Mapoly0061s0133 Marchantia polymorpha HOM05D006198 ORTHO05D008226 3.1e-31 139.4 202 46.0
SMO361G0608 Selaginella moellendorffii HOM05D006198 ORTHO05D008226 5.3e-31 138.7 173 50.3
CARHR225050 Cardamine hirsuta HOM05D006198 ORTHO05D008226 4.5e-22 109.0 110 60.9
CBR_g31781 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-21 107.8 207 40.1
Atru.chr10.1305 Acer truncatum HOM05D006198 ORTHO05D008226 3.8e-21 105.9 128 54.7
Atru.chr10.1302 Acer truncatum HOM05D000067 ORTHO05D000280 8.5e-21 104.8 99 60.6
CDE08G0452 Ceratophyllum demersum HOM05D001706 ORTHO05D008226 1.8e-18 97.1 115 49.6
Hund21523 Selenicereus undatus HOM05D006198 ORTHO05D008226 4.0e-18 95.9 105 52.4
SEGI_25377 Sequoiadendron giganteum HOM05D006198 ORTHO05D008226 2.6e-17 93.2 98 53.1
Zm00001eb243030 Zea mays HOM05D006198 ORTHO05D008226 9.7e-17 91.3 105 52.4
Zm00001eb373810 Zea mays HOM05D006198 ORTHO05D008226 9.7e-17 91.3 105 52.4
Zm00001eb235600 Zea mays HOM05D006198 ORTHO05D008226 1.3e-13 80.9 98 50.0
CBR_g39020 Chara braunii HOM05D006198 ORTHO05D001303 3.6e-11 72.8 108 44.4
Cre12.g523832 Chlamydomonas reinhardtii HOM05D006198 ORTHO05D008226 1.3e-08 64.3 67 56.7
Cre12.g523800 Chlamydomonas reinhardtii HOM05D006198 ORTHO05D008226 1.7e-08 63.9 66 57.6
CAN.G650.27 Capsicum annuum HOM05D000493 ORTHO05D008226 3.1e-07 59.7 38 86.8


User provided reference genes

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