Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g070560.3 Solanum lycopersicum HOM05D006050 ORTHO05D007457 1.6e-291 1005.4 519 100.0
CAN.G650.1 Capsicum annuum HOM05D006050 ORTHO05D007457 1.1e-255 886.3 525 89.0
Nitab4.5_0009607g0030 Nicotiana tabacum HOM05D006050 ORTHO05D007457 5.5e-247 857.4 552 82.6
Nitab4.5_0002275g0100 Nicotiana tabacum HOM05D006050 ORTHO05D007457 1.0e-245 853.2 552 82.2
Peaxi162Scf00170g00718 Petunia axillaris HOM05D006050 ORTHO05D007457 3.1e-226 788.5 520 81.7
Cc09_g09460 Coffea canephora HOM05D006050 ORTHO05D007457 9.0e-181 637.5 464 69.6
Oeu052380.1 Olea europaea HOM05D006050 ORTHO05D007457 6.6e-176 621.3 444 72.1
Migut.M00918 Erythranthe guttata HOM05D006050 ORTHO05D007457 2.2e-171 606.3 473 65.1
Rhsim13G0194500 Rhododendron simsii HOM05D006050 ORTHO05D007457 1.9e-170 603.2 517 63.1
Dinv30732 Davidia involucrata HOM05D006050 ORTHO05D007457 2.4e-170 602.8 409 74.6
Atru.chr10.1253 Acer truncatum HOM05D006050 ORTHO05D007457 1.8e-168 596.7 521 62.4
Lj2C306G12 Lonicera japonica HOM05D006050 ORTHO05D007457 4.3e-167 592.0 537 60.9
Hma1.2p1_0286F.1_g114100 Hydrangea macrophylla HOM05D006050 ORTHO05D007457 3.1e-165 585.9 418 72.0
GSVIVG01021436001 Vitis vinifera HOM05D006050 ORTHO05D007457 1.7e-163 580.1 477 63.1
HanXRQChr02g0047351 Helianthus annuus HOM05D006050 ORTHO05D007457 3.8e-163 578.9 509 62.9
PGR083G2192 Punica granatum HOM05D006050 ORTHO05D007457 7.1e-162 574.7 503 61.0
Actinidia19520 Actinidia chinensis HOM05D006050 ORTHO05D007457 6.0e-161 571.6 455 65.5
QL05p058532 Quercus lobata HOM05D006050 ORTHO05D007457 7.9e-161 571.2 492 62.6
TAR627G0203 Trochodendron aralioides HOM05D006050 ORTHO05D007457 1.8e-160 570.1 520 60.2
Potri.011G080600 Populus trichocarpa HOM05D006050 ORTHO05D007457 8.7e-160 567.8 502 62.4
Manes.17G069500 Manihot esculenta HOM05D006050 ORTHO05D007457 1.9e-159 566.6 499 60.5
Thecc.06G151800 Theobroma cacao HOM05D006050 ORTHO05D007457 2.5e-159 566.2 451 65.6
Gorai.009G155500 Gossypium raimondii HOM05D006050 ORTHO05D007457 1.7e-155 553.5 448 64.7
MD05G1284800 Malus domestica HOM05D006050 ORTHO05D007457 1.7e-155 553.5 523 59.5
Gohir.D05G151500 Gossypium hirsutum HOM05D006050 ORTHO05D007457 6.5e-155 551.6 448 64.5
Aqoxy4G00089 Aquilegia oxysepala HOM05D006050 ORTHO05D007457 8.4e-155 551.2 506 59.7
TWI73G0574 Tripterygium wilfordii HOM05D006050 ORTHO05D007457 8.4e-155 551.2 446 65.5
Gohir.A05G149000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 1.1e-154 550.8 448 64.5
FvH4_3g05720 Fragaria vesca HOM05D006050 ORTHO05D007457 3.2e-154 549.3 467 63.0
RcHm_v2.0_Chr5g0013951 Rosa chinensis HOM05D006050 ORTHO05D007457 2.7e-153 546.2 452 64.4
Sabra11G0069700 Salix brachista HOM05D006050 ORTHO05D007457 1.3e-152 543.9 481 61.7
SalBow8G2368 Salvia bowleyana HOM05D006050 ORTHO05D007457 5.1e-152 542.0 412 66.7
MD10G1263200 Malus domestica HOM05D006050 ORTHO05D007457 1.1e-151 540.8 444 64.6
vmacro04186 Vaccinium macrocarpon HOM05D006050 ORTHO05D007457 5.7e-151 538.5 367 73.6
CiPaw.09G124900 Carya illinoinensis HOM05D006050 ORTHO05D007457 3.4e-148 529.3 499 58.5
Eucgr.D00300 Eucalyptus grandis HOM05D006050 ORTHO05D007457 4.5e-148 528.9 468 58.5
ECA248G2274 Erigeron canadensis HOM05D006050 ORTHO05D007457 7.7e-148 528.1 420 66.7
PSO017G0250 Papaver somniferum HOM05D006050 ORTHO05D007457 3.8e-147 525.8 451 63.2
PSO170G3783 Papaver somniferum HOM05D006050 ORTHO05D007457 1.9e-146 523.5 449 62.4
Sed0022060 Sechium edule HOM05D006050 ORTHO05D007457 5.5e-146 521.9 471 58.4
Haze_05583 Corylus avellana HOM05D006050 ORTHO05D007457 3.6e-145 519.2 501 57.7
ClCG03G007090 Citrullus lanatus HOM05D006050 ORTHO05D007457 7.9e-145 518.1 465 58.7
Nn3g20737 Nelumbo nucifera HOM05D006050 ORTHO05D007457 1.0e-144 517.7 515 58.3
Sabra11G0067500 Salix brachista HOM05D006050 ORTHO05D007457 3.3e-143 512.7 503 57.3
CsaV3_1G032660 Cucumis sativus L. HOM05D006050 ORTHO05D007457 4.8e-142 508.8 479 57.4
SGA_v2.0_scaffold1G00164 Striga asiatica HOM05D006050 ORTHO05D007457 2.2e-139 500.0 437 59.5
DCAR_003921 Daucus carota HOM05D006050 ORTHO05D007457 3.2e-138 496.1 423 61.7
Sc05g0006350 Simmondsia chinensis HOM05D006050 ORTHO05D007457 5.5e-138 495.4 481 54.9
Duzib192G0778 Durio zibethinus HOM05D006050 ORTHO05D007457 3.0e-136 489.6 456 59.0
Lsat_1_v5_gn_1_97741 Lactuca sativa HOM05D006050 ORTHO05D007457 2.6e-135 486.5 418 61.7
Glyma.15G094900 Glycine max HOM05D006050 ORTHO05D007457 4.4e-135 485.7 456 57.2
Lj6g0009694 Lotus japonicus HOM05D006050 ORTHO05D007457 3.7e-134 482.6 471 55.0
FAN21G0460 Fragaria x ananassa HOM05D006050 ORTHO05D007457 2.4e-133 479.9 448 58.7
Phvul.006G163900 Phaseolus vulgaris HOM05D006050 ORTHO05D007457 2.4e-133 479.9 445 57.8
VMungo0540G2452 Vigna mungo HOM05D006050 ORTHO05D007457 2.0e-132 476.9 447 57.7
FAN25G0090 Fragaria x ananassa HOM05D006050 ORTHO05D007457 8.5e-131 471.5 448 57.8
Psat1g190800 Pisum sativum HOM05D006050 ORTHO05D007457 2.5e-130 469.9 468 56.0
THA.LOC104812850 Tarenaya hassleriana HOM05D006050 ORTHO05D007457 1.2e-129 467.6 465 54.0
Sp7g15790 Schrenkiella parvula HOM05D006050 ORTHO05D007457 6.1e-129 465.3 478 55.2
Ca_00551_v3 Cicer arietinum L. HOM05D006050 ORTHO05D007457 8.0e-129 464.9 467 54.2
Ciclev10017950m.g Citrus clementina HOM05D006050 ORTHO05D007457 1.4e-128 464.2 424 59.4
Sopen02g019650 Solanum pennellii HOM05D006050 ORTHO05D007457 6.7e-128 461.8 326 77.0
Duzib235G1544 Durio zibethinus HOM05D006050 ORTHO05D007457 1.1e-127 461.1 528 52.3
Thhalv10025036m.g Eutrema salsugineum HOM05D006050 ORTHO05D007457 2.6e-127 459.9 466 55.2
Gorai.011G043000 Gossypium raimondii HOM05D006050 ORTHO05D007457 5.7e-127 458.8 382 60.2
Medtr2g019630 Medicago truncatula HOM05D006050 ORTHO05D007457 9.7e-127 458.0 518 51.9
AL7G36120 Arabidopsis lyrata HOM05D006050 ORTHO05D007457 1.7e-126 457.2 464 55.8
TPR.G28613 Trifolium pratense HOM05D006050 ORTHO05D007457 1.1e-125 454.5 447 56.2
AT4G18270 Arabidopsis thaliana HOM05D006050 ORTHO05D007457 7.0e-125 451.8 446 56.1
EL10Ac8g19724 Beta vulgaris HOM05D006050 ORTHO05D007457 5.9e-124 448.7 457 51.0
BraA03t14200Z Brassica rapa HOM05D006050 ORTHO05D007457 1.3e-123 447.6 448 55.6
A03p51180 Brassica napus HOM05D006050 ORTHO05D007457 1.7e-123 447.2 448 55.6
Ah.09g232650 Amaranthus hybridus HOM05D006050 ORTHO05D007457 5.0e-123 445.7 493 48.1
C07p49580 Brassica napus HOM05D006050 ORTHO05D007457 1.1e-122 444.5 448 55.6
BolC7t45462H Brassica oleracea HOM05D006050 ORTHO05D007457 2.5e-122 443.4 448 55.4
MELO3C002716.2 Cucumis melo HOM05D006050 ORTHO05D007457 6.8e-120 435.3 417 57.1
Cpa.g.sc166.17 Carica papaya HOM05D006050 ORTHO05D007457 5.9e-116 422.2 308 70.8
Aa31LG6G960 Aethionema arabicum HOM05D006050 ORTHO05D007457 2.2e-115 420.2 511 49.7
arahy.Tifrunner.gnm1.ann1.9VA34X Arachis hypogaea HOM05D006050 ORTHO05D007457 3.8e-115 419.5 470 51.3
arahy.Tifrunner.gnm1.ann1.49YCVY Arachis hypogaea HOM05D006050 ORTHO05D007457 9.5e-114 414.8 480 50.2
ATR0044G011 Amborella trichopoda HOM05D006050 ORTHO05D007457 4.7e-113 412.5 393 55.7
AagrBONN_evm.TU.Sc2ySwM_228.2617 Anthoceros agrestis HOM05D006050 ORTHO05D007457 2.6e-111 406.8 381 56.2
AUR62027517 Chenopodium quinoa HOM05D006050 ORTHO05D007457 4.9e-110 402.5 575 41.9
SGA_v2.0_scaffold333G48995 Striga asiatica HOM05D001706 ORTHO05D007457 6.3e-110 402.1 442 51.6
HPP92_021321 Vanilla planifolia HOM05D006050 ORTHO05D007457 3.3e-106 389.8 430 50.7
SMO239G0146 Selaginella moellendorffii HOM05D006050 ORTHO05D007457 1.5e-103 380.9 326 61.0
FvH4_3g05710 Fragaria vesca HOM05D006050 ORTHO05D007457 2.8e-97 360.1 321 60.1
HPP92_008747 Vanilla planifolia HOM05D006050 ORTHO05D007457 6.2e-97 359.0 409 48.9
Mapoly0001s0010 Marchantia polymorpha HOM05D006050 ORTHO05D007457 3.4e-95 353.2 326 56.4
PGSC0003DMG402021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 1.9e-93 347.4 183 98.9
CBR_g3965 Chara braunii HOM05D006050 ORTHO05D007457 8.3e-86 322.0 356 49.2
PGSC0003DMG401021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 2.8e-81 307.0 166 97.0
MBI10_g02216_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 6.0e-76 289.3 211 70.6
AUR62030211 Chenopodium quinoa HOM05D006050 ORTHO05D007457 1.4e-69 268.1 345 45.5
Carub.0007s2301 Capsella rubella HOM05D006050 ORTHO05D007457 2.7e-68 263.8 193 68.9
COL.COLO4_31087 Corchorus olitorius HOM05D006050 ORTHO05D007457 1.5e-66 258.1 349 45.6
Glyma.13G217500 Glycine max HOM05D006050 ORTHO05D007457 1.6e-65 254.6 264 53.0
MBI10_g02215_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 1.6e-65 254.6 278 52.5
Lalb_Chr18g0055531 Lupinus albus HOM05D006050 ORTHO05D007457 1.2e-63 248.4 190 67.4
Prupe.4G079600 Prunus persica HOM05D006050 ORTHO05D007457 7.6e-63 245.7 277 48.7
Lalb_Chr18g0055521 Lupinus albus HOM05D006050 ORTHO05D007457 1.4e-61 241.5 291 46.7
PRCOL_00000982 Prasinoderma coloniale HOM05D006050 ORTHO05D007457 9.0e-56 222.2 324 44.4
BcaNung05669 Brassica carinata HOM05D006050 ORTHO05D007457 1.2e-55 221.9 166 68.7
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 8.7e-51 205.7 209 52.2
unitig_32.g11518 Utricularia gibba HOM05D006050 ORTHO05D007457 2.5e-50 204.1 226 51.8
Carub.0007s2300 Capsella rubella HOM05D006050 ORTHO05D007457 5.8e-47 193.0 255 45.5
DCAR_029765 Daucus carota HOM05D006050 ORTHO05D007457 1.9e-45 188.0 173 59.5
Zm00001eb120180 Zea mays HOM05D006050 ORTHO05D007457 3.2e-45 187.2 272 41.2
Gohir.D10G040800 Gossypium hirsutum HOM05D006050 ORTHO05D007457 3.9e-43 180.3 185 49.2
Gohir.A10G040000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 5.1e-43 179.9 185 49.2
SEGI_20862 Sequoiadendron giganteum HOM05D006050 ORTHO05D007457 2.5e-42 177.6 123 72.4
CARHR225070 Cardamine hirsuta HOM05D006050 ORTHO05D007457 3.3e-42 177.2 263 42.2
MCO07G478 Micromonas commoda HOM05D006050 ORTHO05D007457 3.7e-41 173.7 368 37.2
FAN11G0378 Fragaria x ananassa HOM05D006050 ORTHO05D007457 6.3e-41 172.9 144 61.8
Cpa.g.sc166.18 Carica papaya HOM05D006050 ORTHO05D007457 8.2e-41 172.6 107 80.4
SEGI_21633 Sequoiadendron giganteum HOM05D006050 ORTHO05D007457 2.6e-39 167.5 152 57.2
Pp3c6_19460 Physcomitrium patens HOM05D006050 ORTHO05D007457 2.2e-33 147.9 175 45.7
AUR62030212 Chenopodium quinoa HOM05D006050 ORTHO05D007457 1.0e-30 139.0 144 52.1
PSO063G2775 Papaver somniferum HOM05D006050 ORTHO05D007457 1.3e-25 122.1 104 62.5
CSS0017405 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 1.1e-24 119.0 116 58.6
Mapoly0042s0029 Marchantia polymorpha HOM05D006050 ORTHO05D007457 1.4e-24 118.6 135 46.7
DCAR_011844 Daucus carota HOM05D006050 ORTHO05D007457 2.1e-20 104.8 90 62.2
CSS0043541 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 1.4e-19 102.1 66 77.3
PGSC0003DMG403021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 1.8e-19 101.7 57 89.5
COL.COLO4_31088 Corchorus olitorius HOM05D006050 ORTHO05D007457 1.1e-16 92.4 61 73.8
CSS0030855 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 1.0e-14 85.9 46 87.0
CSS0036908 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 1.0e-14 85.9 46 87.0
unitig_32.g11513 Utricularia gibba HOM05D057528 ORTHO05D030710 2.5e-13 81.3 77 53.2
CSS0038270 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 5.5e-13 80.1 75 53.3
vmacro04187 Vaccinium macrocarpon HOM05D006050 ORTHO05D030710 2.7e-12 77.8 155 37.4
Cpa.g.sc166.16 Carica papaya HOM05D006050 ORTHO05D007457 5.3e-08 63.5 130 37.7


User provided reference genes

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